Protein–RNA interactions for Protein: P48380

RFX3, Transcription factor RFX3, humanhuman

Predictions only

Length 749 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RFX3P48380 BEAN1-AS1-201ENST00000564618 533 ntTSL 4 BASIC18.7■□□□□ 0.58
RFX3P48380 AC091138.1-202ENST00000578967 457 ntTSL 2 BASIC18.7■□□□□ 0.58
RFX3P48380 ATP6V0E2-211ENST00000606024 893 ntTSL 1 (best) BASIC18.7■□□□□ 0.58
RFX3P48380 IGFBP3-211ENST00000615754 792 ntTSL 5 BASIC18.7■□□□□ 0.58
RFX3P48380 CACTIN-202ENST00000248420 2671 ntAPPRIS P1 TSL 5 BASIC18.7■□□□□ 0.58
RFX3P48380 ODC1-202ENST00000405333 1943 ntAPPRIS P1 TSL 2 BASIC18.7■□□□□ 0.58
RFX3P48380 ADRM1-201ENST00000253003 1478 ntAPPRIS P1 TSL 1 (best) BASIC18.7■□□□□ 0.58
RFX3P48380 UBE2E3-201ENST00000392415 1347 ntAPPRIS P1 TSL 3 BASIC18.7■□□□□ 0.58
RFX3P48380 ZCCHC24-202ENST00000372336 4933 ntAPPRIS P1 TSL 1 (best) BASIC18.7■□□□□ 0.58
RFX3P48380 CYP27A1-201ENST00000258415 2286 ntAPPRIS P1 TSL 1 (best) BASIC18.7■□□□□ 0.58
RFX3P48380 GLG1-214ENST00000627032 2147 ntTSL 5 BASIC18.7■□□□□ 0.58
RFX3P48380 MAP3K14-AS1-203ENST00000585780 2475 ntTSL 2 BASIC18.69■□□□□ 0.58
RFX3P48380 CPT2-203ENST00000635862 2319 ntTSL 5 BASIC18.69■□□□□ 0.58
RFX3P48380 MLST8-202ENST00000382450 1861 ntAPPRIS ALT1 TSL 2 BASIC18.69■□□□□ 0.58
RFX3P48380 MLST8-215ENST00000564088 1861 ntAPPRIS P3 TSL 2 BASIC18.69■□□□□ 0.58
RFX3P48380 NCLN-205ENST00000590671 2070 ntTSL 2 BASIC18.69■□□□□ 0.58
RFX3P48380 BRICD5-201ENST00000328540 1913 ntAPPRIS P1 TSL 1 (best) BASIC18.69■□□□□ 0.58
RFX3P48380 FN3K-201ENST00000300784 1434 ntAPPRIS P1 TSL 1 (best) BASIC18.69■□□□□ 0.58
RFX3P48380 TMEM243-201ENST00000257637 1063 ntAPPRIS P1 TSL 1 (best) BASIC18.69■□□□□ 0.58
RFX3P48380 TMPO-201ENST00000261210 820 ntTSL 1 (best) BASIC18.69■□□□□ 0.58
RFX3P48380 ETHE1-201ENST00000292147 963 ntAPPRIS P1 TSL 1 (best) BASIC18.69■□□□□ 0.58
RFX3P48380 GCC2-AS1-201ENST00000322353 558 ntTSL 2 BASIC18.69■□□□□ 0.58
RFX3P48380 XBP1-202ENST00000344347 1131 ntTSL 5 BASIC18.69■□□□□ 0.58
RFX3P48380 GPX1P1-201ENST00000388829 606 ntBASIC18.69■□□□□ 0.58
RFX3P48380 HAGH-203ENST00000455446 1276 ntTSL 2 BASIC18.69■□□□□ 0.58
RFX3P48380 OAS3-207ENST00000551007 998 ntTSL 2 BASIC18.69■□□□□ 0.58
RFX3P48380 ZNF263-205ENST00000574253 1139 ntTSL 2 BASIC18.69■□□□□ 0.58
RFX3P48380 CIRBP-214ENST00000587896 1081 ntTSL 2 BASIC18.69■□□□□ 0.58
RFX3P48380 CXCR3-202ENST00000373693 1624 ntAPPRIS P1 TSL 1 (best) BASIC18.69■□□□□ 0.58
RFX3P48380 XBP1-203ENST00000403532 1824 ntAPPRIS ALT1 TSL 3 BASIC18.69■□□□□ 0.58
RFX3P48380 ADM-207ENST00000530439 1839 ntTSL 2 BASIC18.69■□□□□ 0.58
RFX3P48380 OTUB1-210ENST00000541478 1803 ntTSL 5 BASIC18.69■□□□□ 0.58
RFX3P48380 TLE3-214ENST00000558939 6004 ntAPPRIS P4 TSL 1 (best) BASIC18.69■□□□□ 0.58
RFX3P48380 FLT1-201ENST00000282397 7092 ntAPPRIS P1 TSL 1 (best) BASIC18.69■□□□□ 0.58
RFX3P48380 CERKL-201ENST00000339098 1677 ntAPPRIS P3 TSL 1 (best) BASIC18.69■□□□□ 0.58
RFX3P48380 CD55-203ENST00000367063 1691 ntAPPRIS ALT2 TSL 1 (best) BASIC18.69■□□□□ 0.58
RFX3P48380 MARC2-201ENST00000359316 1335 ntTSL 1 (best) BASIC18.69■□□□□ 0.58
RFX3P48380 CACNA1A-215ENST00000635727 7536 ntAPPRIS ALT2 TSL 5 BASIC18.69■□□□□ 0.58
RFX3P48380 AC005224.2-201ENST00000571192 1885 ntTSL 2 BASIC18.69■□□□□ 0.58
RFX3P48380 RASSF7-204ENST00000431809 1745 ntAPPRIS ALT2 TSL 5 BASIC18.69■□□□□ 0.58
RFX3P48380 SNX27-203ENST00000368843 7197 ntAPPRIS P3 TSL 1 (best) BASIC18.69■□□□□ 0.58
RFX3P48380 REM2-201ENST00000267396 1923 ntAPPRIS P1 TSL 1 (best) BASIC18.68■□□□□ 0.58
RFX3P48380 TSTA3-201ENST00000425753 1362 ntAPPRIS P1 TSL 1 (best) BASIC18.68■□□□□ 0.58
RFX3P48380 HMOX2-208ENST00000570646 2147 ntAPPRIS P1 TSL 1 (best) BASIC18.68■□□□□ 0.58
RFX3P48380 SLC25A46-202ENST00000447245 1575 ntTSL 2 BASIC18.68■□□□□ 0.58
RFX3P48380 KAZN-203ENST00000376030 6030 ntAPPRIS P1 TSL 5 BASIC18.68■□□□□ 0.58
RFX3P48380 PBX1-222ENST00000627490 1769 ntTSL 2 BASIC18.68■□□□□ 0.58
RFX3P48380 TAF15-215ENST00000605844 2191 ntAPPRIS P3 TSL 1 (best) BASIC18.68■□□□□ 0.58
RFX3P48380 UBE2F-201ENST00000272930 2009 ntAPPRIS P1 TSL 1 (best) BASIC18.68■□□□□ 0.58
RFX3P48380 PDZD3-201ENST00000322712 2204 ntTSL 1 (best) BASIC18.68■□□□□ 0.58
RFX3P48380 GAR1-201ENST00000226796 1224 ntAPPRIS P1 TSL 1 (best) BASIC18.68■□□□□ 0.58
RFX3P48380 ODF3B-201ENST00000329363 970 ntAPPRIS P1 TSL 5 BASIC18.68■□□□□ 0.58
RFX3P48380 NXNL2-201ENST00000375854 805 ntAPPRIS P1 TSL 5 BASIC18.68■□□□□ 0.58
RFX3P48380 SERPINH1P1-201ENST00000419794 1249 ntBASIC18.68■□□□□ 0.58
RFX3P48380 ACBD4-202ENST00000376955 1453 ntTSL 2 BASIC18.68■□□□□ 0.58
RFX3P48380 ARID1B-203ENST00000350026 7962 ntAPPRIS P3 TSL 1 (best) BASIC18.68■□□□□ 0.58
RFX3P48380 GYG1-202ENST00000345003 2052 ntTSL 1 (best) BASIC18.68■□□□□ 0.58
RFX3P48380 EVPL-202ENST00000586740 6223 ntTSL 1 (best) BASIC18.68■□□□□ 0.58
RFX3P48380 UGDH-206ENST00000507089 1712 ntTSL 2 BASIC18.68■□□□□ 0.58
RFX3P48380 MORN1-202ENST00000378529 1500 ntAPPRIS ALT2 TSL 1 (best) BASIC18.68■□□□□ 0.58
RFX3P48380 KCNA2-206ENST00000638477 1524 ntTSL 5 BASIC18.68■□□□□ 0.58
RFX3P48380 KLHDC9-201ENST00000368011 1314 ntAPPRIS P1 TSL 1 (best) BASIC18.68■□□□□ 0.58
RFX3P48380 PHLDA3-202ENST00000367311 2640 ntAPPRIS P1 TSL 1 (best) BASIC18.68■□□□□ 0.58
RFX3P48380 ALDOA-221ENST00000566897 2448 ntAPPRIS P2 TSL 2 BASIC18.68■□□□□ 0.58
RFX3P48380 NTN5-201ENST00000270235 1836 ntAPPRIS P1 TSL 1 (best) BASIC18.67■□□□□ 0.58
RFX3P48380 PHF20L1-214ENST00000485595 1810 ntTSL 2 BASIC18.67■□□□□ 0.58
RFX3P48380 SORCS3-202ENST00000369701 5757 ntAPPRIS P1 TSL 1 (best) BASIC18.67■□□□□ 0.58
RFX3P48380 HDAC2-201ENST00000368632 2084 ntTSL 2 BASIC18.67■□□□□ 0.58
RFX3P48380 UNC119-202ENST00000335765 1424 ntAPPRIS P1 TSL 1 (best) BASIC18.67■□□□□ 0.58
RFX3P48380 EDEM1-201ENST00000256497 6146 ntAPPRIS P1 TSL 1 (best) BASIC18.67■□□□□ 0.58
RFX3P48380 GDF15-201ENST00000252809 1200 ntAPPRIS P1 TSL 1 (best) BASIC18.67■□□□□ 0.58
RFX3P48380 LINC00471-201ENST00000313064 1282 ntTSL 1 (best) BASIC18.67■□□□□ 0.58
RFX3P48380 FAM229A-204ENST00000432622 699 ntAPPRIS P2 TSL 2 BASIC18.67■□□□□ 0.58
RFX3P48380 ANAPC11-208ENST00000572851 686 ntAPPRIS P1 TSL 1 (best) BASIC18.67■□□□□ 0.58
RFX3P48380 AC027307.1-201ENST00000590252 457 ntTSL 5 BASIC18.67■□□□□ 0.58
RFX3P48380 AL772284.2-201ENST00000620151 1147 ntAPPRIS P1 TSL 5 BASIC18.67■□□□□ 0.58
RFX3P48380 COL18A1-202ENST00000355480 5924 ntAPPRIS P3 TSL 1 (best) BASIC18.67■□□□□ 0.58
RFX3P48380 SLC35A3-222ENST00000640715 1989 ntTSL 5 BASIC18.67■□□□□ 0.58
RFX3P48380 SIMC1-203ENST00000429602 2694 ntAPPRIS ALT2 TSL 1 (best) BASIC18.67■□□□□ 0.58
RFX3P48380 DYNLT3-201ENST00000378578 2217 ntAPPRIS P1 TSL 1 (best) BASIC18.67■□□□□ 0.58
RFX3P48380 GNA14-201ENST00000341700 2482 ntAPPRIS P1 TSL 1 (best) BASIC18.67■□□□□ 0.58
RFX3P48380 PLEKHG5-207ENST00000400913 4698 ntAPPRIS P3 TSL 5 BASIC18.67■□□□□ 0.58
RFX3P48380 PCDHB12-202ENST00000622978 2093 ntTSL 2 BASIC18.67■□□□□ 0.58
RFX3P48380 GATA5-201ENST00000252997 2595 ntAPPRIS P1 TSL 1 (best) BASIC18.67■□□□□ 0.58
RFX3P48380 FYN-204ENST00000368678 2573 ntAPPRIS ALT1 TSL 5 BASIC18.67■□□□□ 0.58
RFX3P48380 MTFP1-201ENST00000266263 1370 ntAPPRIS P1 TSL 1 (best) BASIC18.67■□□□□ 0.58
RFX3P48380 MFSD10-206ENST00000508221 1639 ntTSL 5 BASIC18.67■□□□□ 0.58
RFX3P48380 KANK4-204ENST00000371153 4665 ntAPPRIS P1 TSL 1 (best) BASIC18.67■□□□□ 0.58
RFX3P48380 NSDHL-201ENST00000370274 1929 ntAPPRIS P2 TSL 1 (best) BASIC18.66■□□□□ 0.58
RFX3P48380 APBB3-203ENST00000357560 2218 ntAPPRIS P3 TSL 5 BASIC18.66■□□□□ 0.58
RFX3P48380 SERPINF2-201ENST00000324015 2284 ntAPPRIS P1 TSL 5 BASIC18.66■□□□□ 0.58
RFX3P48380 FNBP1-203ENST00000443566 5227 ntTSL 1 (best) BASIC18.66■□□□□ 0.58
RFX3P48380 SSH3-202ENST00000308298 2046 ntTSL 2 BASIC18.66■□□□□ 0.58
RFX3P48380 NAPSA-201ENST00000253719 1548 ntAPPRIS P1 TSL 1 (best) BASIC18.66■□□□□ 0.58
RFX3P48380 FBXO6-201ENST00000376753 1520 ntAPPRIS P1 TSL 1 (best) BASIC18.66■□□□□ 0.58
RFX3P48380 VPS53-201ENST00000291074 2656 ntTSL 1 (best) BASIC18.66■□□□□ 0.58
RFX3P48380 C16orf74-201ENST00000284245 906 ntAPPRIS P2 TSL 1 (best) BASIC18.66■□□□□ 0.58
RFX3P48380 AIDA-202ENST00000355727 1072 ntTSL 5 BASIC18.66■□□□□ 0.58
RFX3P48380 NCF1B-203ENST00000435988 1254 ntBASIC18.66■□□□□ 0.58
RFX3P48380 MAP2K4P1-201ENST00000438453 1195 ntBASIC18.66■□□□□ 0.58
Retrieved 100 of 98,524 protein–RNA pairs in 32.6 ms