Protein–RNA interactions for Protein: P41225

SOX3, Transcription factor SOX-3, humanhuman

Predictions only

Length 446 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SOX3P41225 AC138696.1-201ENST00000522452 2897 ntAPPRIS P1 TSL 1 (best) BASIC18.73■□□□□ 0.59
SOX3P41225 RXFP3-201ENST00000330120 1852 ntAPPRIS P1 BASIC18.73■□□□□ 0.59
SOX3P41225 KANK4-202ENST00000354381 2103 ntTSL 2 BASIC18.73■□□□□ 0.59
SOX3P41225 GPR78-201ENST00000382487 1694 ntAPPRIS P1 TSL 1 (best) BASIC18.73■□□□□ 0.59
SOX3P41225 ERF-202ENST00000440177 2032 ntTSL 2 BASIC18.73■□□□□ 0.59
SOX3P41225 FAM189B-201ENST00000350210 2379 ntTSL 1 (best) BASIC18.73■□□□□ 0.59
SOX3P41225 NRN1-203ENST00000616243 1556 ntAPPRIS P1 TSL 4 BASIC18.72■□□□□ 0.59
SOX3P41225 KCNMA1-293ENST00000640969 5789 ntAPPRIS ALT2 TSL 5 BASIC18.72■□□□□ 0.59
SOX3P41225 FUT4-201ENST00000358752 6059 ntAPPRIS P1 BASIC18.72■□□□□ 0.59
SOX3P41225 ZNF510-203ENST00000375231 5616 ntAPPRIS P1 TSL 1 (best) BASIC18.72■□□□□ 0.59
SOX3P41225 PYURF-201ENST00000273968 1361 ntAPPRIS P1 TSL 1 (best) BASIC18.72■□□□□ 0.59
SOX3P41225 PRKCD-202ENST00000394729 2810 ntAPPRIS P1 TSL 1 (best) BASIC18.72■□□□□ 0.59
SOX3P41225 TMEM189-201ENST00000371650 2222 ntAPPRIS ALT1 TSL 1 (best) BASIC18.72■□□□□ 0.59
SOX3P41225 GPR162-203ENST00000428545 1610 ntTSL 1 (best) BASIC18.72■□□□□ 0.59
SOX3P41225 CDO1-201ENST00000250535 1860 ntAPPRIS P1 TSL 1 (best) BASIC18.72■□□□□ 0.59
SOX3P41225 IFI27L2-201ENST00000238609 511 ntAPPRIS P1 TSL 1 (best) BASIC18.72■□□□□ 0.59
SOX3P41225 AC114730.1-201ENST00000400768 472 ntTSL 4 BASIC18.72■□□□□ 0.59
SOX3P41225 CKLF-CMTM1-204ENST00000532838 587 ntAPPRIS ALT2 TSL 4 BASIC18.72■□□□□ 0.59
SOX3P41225 AL356020.1-201ENST00000554235 1076 ntTSL 5 BASIC18.72■□□□□ 0.59
SOX3P41225 C14orf28-204ENST00000557112 1097 ntTSL 5 BASIC18.72■□□□□ 0.59
SOX3P41225 LINC01578-208ENST00000557147 490 ntTSL 3 BASIC18.72■□□□□ 0.59
SOX3P41225 LINC01956-201ENST00000557729 695 ntTSL 5 BASIC18.72■□□□□ 0.59
SOX3P41225 VCPKMT-202ENST00000395860 1761 ntAPPRIS P1 TSL 1 (best) BASIC18.72■□□□□ 0.59
SOX3P41225 NES-201ENST00000368223 5558 ntAPPRIS P1 TSL 1 (best) BASIC18.72■□□□□ 0.59
SOX3P41225 MSANTD1-203ENST00000507492 2289 ntAPPRIS ALT2 TSL 1 (best) BASIC18.72■□□□□ 0.59
SOX3P41225 LRRC25-202ENST00000595840 1924 ntAPPRIS P1 TSL 1 (best) BASIC18.72■□□□□ 0.59
SOX3P41225 HMOX2-218ENST00000619913 1908 ntAPPRIS P1 TSL 5 BASIC18.72■□□□□ 0.59
SOX3P41225 ST3GAL5-202ENST00000377332 2165 ntTSL 5 BASIC18.72■□□□□ 0.59
SOX3P41225 BCL7A-201ENST00000261822 2581 ntAPPRIS P1 TSL 1 (best) BASIC18.72■□□□□ 0.59
SOX3P41225 SNX8-201ENST00000222990 4727 ntAPPRIS P1 TSL 1 (best) BASIC18.72■□□□□ 0.59
SOX3P41225 PHB2-201ENST00000399433 1308 ntAPPRIS ALT1 TSL 2 BASIC18.72■□□□□ 0.59
SOX3P41225 MAP7D2-203ENST00000443379 2476 ntAPPRIS ALT2 TSL 2 BASIC18.72■□□□□ 0.59
SOX3P41225 MON1A-201ENST00000296473 2370 ntAPPRIS P3 TSL 1 (best) BASIC18.71■□□□□ 0.59
SOX3P41225 RCN3-201ENST00000270645 1859 ntAPPRIS P1 TSL 1 (best) BASIC18.71■□□□□ 0.59
SOX3P41225 FAM167A-207ENST00000534308 1642 ntAPPRIS P1 TSL 1 (best) BASIC18.71■□□□□ 0.59
SOX3P41225 BIN2-210ENST00000615107 2255 ntAPPRIS P1 TSL 1 (best) BASIC18.71■□□□□ 0.59
SOX3P41225 SNX32-201ENST00000308342 2003 ntAPPRIS P1 TSL 1 (best) BASIC18.71■□□□□ 0.59
SOX3P41225 CNTNAP3B-212ENST00000617422 2170 ntTSL 2 BASIC18.71■□□□□ 0.59
SOX3P41225 CYB561-213ENST00000581573 2344 ntAPPRIS P1 TSL 1 (best) BASIC18.71■□□□□ 0.59
SOX3P41225 CERKL-201ENST00000339098 1677 ntAPPRIS P3 TSL 1 (best) BASIC18.71■□□□□ 0.59
SOX3P41225 KCNK4-201ENST00000394525 1673 ntAPPRIS P1 TSL 1 (best) BASIC18.71■□□□□ 0.59
SOX3P41225 THAP7-201ENST00000215742 1213 ntAPPRIS P1 TSL 1 (best) BASIC18.71■□□□□ 0.59
SOX3P41225 MRPL12-201ENST00000333676 1028 ntAPPRIS P1 TSL 1 (best) BASIC18.71■□□□□ 0.59
SOX3P41225 GAS7-202ENST00000396115 929 ntTSL 5 BASIC18.71■□□□□ 0.59
SOX3P41225 LINC02531-201ENST00000404689 593 ntTSL 5 BASIC18.71■□□□□ 0.59
SOX3P41225 CCDC103-202ENST00000410006 921 ntAPPRIS P1 TSL 2 BASIC18.71■□□□□ 0.59
SOX3P41225 OTUB1-203ENST00000428192 1296 ntAPPRIS P2 TSL 2 BASIC18.71■□□□□ 0.59
SOX3P41225 FAM201B-201ENST00000458407 597 ntBASIC18.71■□□□□ 0.59
SOX3P41225 CLN6-207ENST00000566347 981 ntTSL 1 (best) BASIC18.71■□□□□ 0.59
SOX3P41225 AC060766.5-201ENST00000590539 871 ntBASIC18.71■□□□□ 0.59
SOX3P41225 AC008750.8-201ENST00000600067 551 ntAPPRIS P1 TSL 5 BASIC18.71■□□□□ 0.59
SOX3P41225 JADE2-211ENST00000612830 1251 ntTSL 1 (best) BASIC18.71■□□□□ 0.59
SOX3P41225 HLA-B-256ENST00000639848 1089 ntBASIC18.71■□□□□ 0.59
SOX3P41225 FGF2-201ENST00000264498 6775 ntTSL 1 (best) BASIC18.71■□□□□ 0.59
SOX3P41225 ASCC1-205ENST00000394919 2683 ntAPPRIS P1 TSL 2 BASIC18.71■□□□□ 0.59
SOX3P41225 ADRM1-201ENST00000253003 1478 ntAPPRIS P1 TSL 1 (best) BASIC18.71■□□□□ 0.59
SOX3P41225 FXYD3-203ENST00000435734 1467 ntTSL 1 (best) BASIC18.71■□□□□ 0.59
SOX3P41225 PADI2-201ENST00000375481 1607 ntTSL 1 (best) BASIC18.71■□□□□ 0.58
SOX3P41225 GABRD-213ENST00000640067 1632 ntAPPRIS ALT2 TSL 5 BASIC18.71■□□□□ 0.58
SOX3P41225 RTN4RL2-201ENST00000335099 2203 ntAPPRIS P1 TSL 1 (best) BASIC18.7■□□□□ 0.58
SOX3P41225 CRK-204ENST00000574295 1391 ntTSL 5 BASIC18.7■□□□□ 0.58
SOX3P41225 EP300-AS1-201ENST00000420537 457 ntTSL 3 BASIC18.7■□□□□ 0.58
SOX3P41225 POU5F1P3-201ENST00000428824 1078 ntBASIC18.7■□□□□ 0.58
SOX3P41225 STPG4-207ENST00000445927 891 ntAPPRIS P1 TSL 5 BASIC18.7■□□□□ 0.58
SOX3P41225 NREP-209ENST00000455559 698 ntAPPRIS P1 TSL 4 BASIC18.7■□□□□ 0.58
SOX3P41225 TMEM9-209ENST00000485839 938 ntAPPRIS P3 TSL 2 BASIC18.7■□□□□ 0.58
SOX3P41225 CFL1-211ENST00000531407 1062 ntTSL 2 BASIC18.7■□□□□ 0.58
SOX3P41225 AC008105.1-201ENST00000587534 2003 ntTSL 2 BASIC18.7■□□□□ 0.58
SOX3P41225 TINCR-201ENST00000448587 3733 ntAPPRIS P1 TSL 1 (best) BASIC18.7■□□□□ 0.58
SOX3P41225 ITPKB-202ENST00000366784 3146 ntTSL 1 (best) BASIC18.7■□□□□ 0.58
SOX3P41225 STK25-205ENST00000405883 1904 ntTSL 2 BASIC18.7■□□□□ 0.58
SOX3P41225 ZFP69-202ENST00000372706 2871 ntAPPRIS P1 TSL 1 (best) BASIC18.7■□□□□ 0.58
SOX3P41225 DTX3-208ENST00000551632 1840 ntAPPRIS ALT1 TSL 2 BASIC18.7■□□□□ 0.58
SOX3P41225 UBE2F-201ENST00000272930 2009 ntAPPRIS P1 TSL 1 (best) BASIC18.69■□□□□ 0.58
SOX3P41225 NFYC-204ENST00000372653 1862 ntTSL 2 BASIC18.69■□□□□ 0.58
SOX3P41225 NXN-201ENST00000336868 3036 ntAPPRIS P1 TSL 1 (best) BASIC18.69■□□□□ 0.58
SOX3P41225 KRT8P36-201ENST00000489121 1440 ntBASIC18.69■□□□□ 0.58
SOX3P41225 QKI-201ENST00000275262 6964 ntTSL 1 (best) BASIC18.69■□□□□ 0.58
SOX3P41225 UBE2Z-201ENST00000360943 3122 ntAPPRIS P1 TSL 1 (best) BASIC18.69■□□□□ 0.58
SOX3P41225 MRAP-201ENST00000303645 935 ntAPPRIS P4 TSL 1 (best) BASIC18.69■□□□□ 0.58
SOX3P41225 MAL-201ENST00000309988 1112 ntAPPRIS P1 TSL 1 (best) BASIC18.69■□□□□ 0.58
SOX3P41225 SYNE2-201ENST00000341472 1132 ntTSL 1 (best) BASIC18.69■□□□□ 0.58
SOX3P41225 DUSP23-201ENST00000368107 756 ntAPPRIS P1 TSL 1 (best) BASIC18.69■□□□□ 0.58
SOX3P41225 SPATA25-201ENST00000372519 757 ntAPPRIS P1 TSL 1 (best) BASIC18.69■□□□□ 0.58
SOX3P41225 BID-204ENST00000399767 2129 ntTSL 2 BASIC18.69■□□□□ 0.58
SOX3P41225 UNC93B5-201ENST00000530315 699 ntBASIC18.69■□□□□ 0.58
SOX3P41225 CD99-210ENST00000611428 1243 ntAPPRIS ALT2 TSL 1 (best) BASIC18.69■□□□□ 0.58
SOX3P41225 FDXR-204ENST00000442102 1967 ntTSL 2 BASIC18.69■□□□□ 0.58
SOX3P41225 LZTS3-201ENST00000329152 5257 ntAPPRIS P1 TSL 1 (best) BASIC18.69■□□□□ 0.58
SOX3P41225 TTC12-202ENST00000393020 2541 ntTSL 5 BASIC18.69■□□□□ 0.58
SOX3P41225 AC013269.1-201ENST00000409259 1653 ntAPPRIS P1 TSL 1 (best) BASIC18.69■□□□□ 0.58
SOX3P41225 TISP43-206ENST00000623376 1653 ntAPPRIS ALT2 TSL 1 (best) BASIC18.69■□□□□ 0.58
SOX3P41225 CCDC88B-202ENST00000356786 4915 ntAPPRIS P1 TSL 1 (best) BASIC18.69■□□□□ 0.58
SOX3P41225 SYTL1-211ENST00000618673 1712 ntTSL 5 BASIC18.69■□□□□ 0.58
SOX3P41225 NGEF-202ENST00000373552 2286 ntAPPRIS P1 TSL 2 BASIC18.69■□□□□ 0.58
SOX3P41225 TMEM51-201ENST00000376008 1931 ntAPPRIS P1 TSL 2 BASIC18.68■□□□□ 0.58
SOX3P41225 SERPINB6-204ENST00000380529 1370 ntAPPRIS P1 TSL 2 BASIC18.68■□□□□ 0.58
SOX3P41225 MBD1-216ENST00000587605 1945 ntTSL 2 BASIC18.68■□□□□ 0.58
SOX3P41225 ZFP69B-202ENST00000411995 2109 ntAPPRIS P1 TSL 5 BASIC18.68■□□□□ 0.58
SOX3P41225 AC092368.3-202ENST00000574180 1591 ntBASIC18.68■□□□□ 0.58
Retrieved 100 of 98,524 protein–RNA pairs in 10.7 ms