Protein–RNA interactions for Protein: P34897

SHMT2, Serine hydroxymethyltransferase, mitochondrial, humanhuman

Predictions only

Length 504 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2P34897 TSPAN14-203ENST00000372156 1380 ntAPPRIS P1 TSL 5 BASIC19.51■□□□□ 0.71
SHMT2P34897 ETV7-203ENST00000373737 1488 ntAPPRIS ALT2 TSL 1 (best) BASIC19.51■□□□□ 0.71
SHMT2P34897 LBX2-203ENST00000460508 1452 ntTSL 1 (best) BASIC19.51■□□□□ 0.71
SHMT2P34897 RAB11B-201ENST00000328024 1751 ntAPPRIS P1 TSL 1 (best) BASIC19.51■□□□□ 0.71
SHMT2P34897 SLC2A8-215ENST00000610552 1763 ntTSL 3 BASIC19.51■□□□□ 0.71
SHMT2P34897 TAF15-215ENST00000605844 2191 ntAPPRIS P3 TSL 1 (best) BASIC19.51■□□□□ 0.71
SHMT2P34897 YTHDF3-213ENST00000621820 2363 ntTSL 2 BASIC19.51■□□□□ 0.71
SHMT2P34897 ME2-218ENST00000640965 2476 ntTSL 5 BASIC19.51■□□□□ 0.71
SHMT2P34897 ZNF316-201ENST00000382252 5392 ntAPPRIS P1 TSL 5 BASIC19.51■□□□□ 0.71
SHMT2P34897 SOX2-201ENST00000325404 2513 ntAPPRIS P1 BASIC19.51■□□□□ 0.71
SHMT2P34897 JMJD4-202ENST00000438896 2502 ntTSL 2 BASIC19.51■□□□□ 0.71
SHMT2P34897 RGMA-210ENST00000557301 1929 ntAPPRIS ALT2 TSL 2 BASIC19.51■□□□□ 0.71
SHMT2P34897 ZDHHC16-202ENST00000352634 1718 ntAPPRIS ALT1 TSL 1 (best) BASIC19.51■□□□□ 0.71
SHMT2P34897 LMF1-212ENST00000568897 1603 ntTSL 5 BASIC19.51■□□□□ 0.71
SHMT2P34897 WT1-211ENST00000639907 1545 ntAPPRIS ALT2 TSL 2 BASIC19.51■□□□□ 0.71
SHMT2P34897 PPP1R36-201ENST00000298705 1405 ntAPPRIS P2 TSL 1 (best) BASIC19.51■□□□□ 0.71
SHMT2P34897 SCUBE1-201ENST00000290460 2258 ntTSL 1 (best) BASIC19.5■□□□□ 0.71
SHMT2P34897 SLC44A3-203ENST00000446120 2094 ntTSL 2 BASIC19.5■□□□□ 0.71
SHMT2P34897 TMEM163-201ENST00000281924 1892 ntAPPRIS P1 TSL 1 (best) BASIC19.5■□□□□ 0.71
SHMT2P34897 ISLR2-204ENST00000453268 2812 ntAPPRIS P1 TSL 1 (best) BASIC19.5■□□□□ 0.71
SHMT2P34897 FAM76A-205ENST00000419687 1661 ntTSL 2 BASIC19.5■□□□□ 0.71
SHMT2P34897 KCNE5-201ENST00000372101 1473 ntAPPRIS P1 BASIC19.5■□□□□ 0.71
SHMT2P34897 BACE1-209ENST00000513780 1465 ntTSL 1 (best) BASIC19.5■□□□□ 0.71
SHMT2P34897 C10orf76-201ENST00000311122 724 ntTSL 1 (best) BASIC19.5■□□□□ 0.71
SHMT2P34897 GUK1-201ENST00000312726 1084 ntAPPRIS P3 TSL 1 (best) BASIC19.5■□□□□ 0.71
SHMT2P34897 EP300-AS1-201ENST00000420537 457 ntTSL 3 BASIC19.5■□□□□ 0.71
SHMT2P34897 ELAVL3-202ENST00000438662 1223 ntAPPRIS ALT1 TSL 5 BASIC19.5■□□□□ 0.71
SHMT2P34897 AC004889.1-203ENST00000464929 819 ntTSL 5 BASIC19.5■□□□□ 0.71
SHMT2P34897 OR2A1-AS1-207ENST00000486094 819 ntBASIC19.5■□□□□ 0.71
SHMT2P34897 AL691442.1-201ENST00000505139 1042 ntAPPRIS P1 TSL 2 BASIC19.5■□□□□ 0.71
SHMT2P34897 AC005829.2-201ENST00000571422 1056 ntBASIC19.5■□□□□ 0.71
SHMT2P34897 MIR4651-201ENST00000582622 73 ntBASIC19.5■□□□□ 0.71
SHMT2P34897 AC010646.1-201ENST00000594059 515 ntAPPRIS P1 TSL 4 BASIC19.5■□□□□ 0.71
SHMT2P34897 PTGIR-202ENST00000594275 699 ntTSL 3 BASIC19.5■□□□□ 0.71
SHMT2P34897 PTGIR-206ENST00000598865 724 ntTSL 3 BASIC19.5■□□□□ 0.71
SHMT2P34897 REM2-201ENST00000267396 1923 ntAPPRIS P1 TSL 1 (best) BASIC19.5■□□□□ 0.71
SHMT2P34897 TCIRG1-213ENST00000532635 2457 ntTSL 1 (best) BASIC19.5■□□□□ 0.71
SHMT2P34897 SLC39A4-201ENST00000276833 2297 ntTSL 2 BASIC19.5■□□□□ 0.71
SHMT2P34897 TMPRSS5-212ENST00000545579 2163 ntAPPRIS ALT2 TSL 1 (best) BASIC19.5■□□□□ 0.71
SHMT2P34897 RNF38-204ENST00000357058 5254 ntAPPRIS P1 TSL 5 BASIC19.5■□□□□ 0.71
SHMT2P34897 TADA2B-204ENST00000512388 1343 ntTSL 5 BASIC19.5■□□□□ 0.71
SHMT2P34897 CPNE9-202ENST00000383831 1751 ntTSL 5 BASIC19.49■□□□□ 0.71
SHMT2P34897 DISC1-204ENST00000366633 2676 ntAPPRIS ALT2 TSL 1 (best) BASIC19.49■□□□□ 0.71
SHMT2P34897 DISC1-214ENST00000539444 2658 ntAPPRIS ALT2 TSL 1 (best) BASIC19.49■□□□□ 0.71
SHMT2P34897 TACC3-213ENST00000617535 1693 ntTSL 5 BASIC19.49■□□□□ 0.71
SHMT2P34897 DBNL-220ENST00000494774 2117 ntAPPRIS P4 TSL 1 (best) BASIC19.49■□□□□ 0.71
SHMT2P34897 SP3-208ENST00000640958 2142 ntAPPRIS ALT2 TSL 1 (best) BASIC19.49■□□□□ 0.71
SHMT2P34897 MAST2-201ENST00000361297 5738 ntAPPRIS P1 TSL 1 (best) BASIC19.49■□□□□ 0.71
SHMT2P34897 MAPT-210ENST00000535772 5718 ntTSL 5 BASIC19.49■□□□□ 0.71
SHMT2P34897 SET-201ENST00000322030 2915 ntAPPRIS P1 TSL 1 (best) BASIC19.49■□□□□ 0.71
SHMT2P34897 CDC14B-203ENST00000375242 2965 ntTSL 2 BASIC19.49■□□□□ 0.71
SHMT2P34897 SDHAF3-202ENST00000432641 2060 ntAPPRIS P1 TSL 1 (best) BASIC19.49■□□□□ 0.71
SHMT2P34897 TOR1B-201ENST00000259339 2769 ntAPPRIS P1 TSL 1 (best) BASIC19.49■□□□□ 0.71
SHMT2P34897 C10orf91-201ENST00000321248 1257 ntTSL 1 (best) BASIC19.49■□□□□ 0.71
SHMT2P34897 LCE2A-201ENST00000368779 592 ntAPPRIS P1 TSL 1 (best) BASIC19.49■□□□□ 0.71
SHMT2P34897 EGFL7-202ENST00000371698 1282 ntAPPRIS P1 TSL 1 (best) BASIC19.49■□□□□ 0.71
SHMT2P34897 CHPF-202ENST00000373891 1079 ntTSL 2 BASIC19.49■□□□□ 0.71
SHMT2P34897 NUDT8-202ENST00000376693 728 ntAPPRIS ALT2 TSL 2 BASIC19.49■□□□□ 0.71
SHMT2P34897 ZPBP-203ENST00000419417 1095 ntAPPRIS ALT2 TSL 1 (best) BASIC19.49■□□□□ 0.71
SHMT2P34897 TNIK-208ENST00000465393 750 ntTSL 1 (best) BASIC19.49■□□□□ 0.71
SHMT2P34897 TMEM9-209ENST00000485839 938 ntAPPRIS P3 TSL 2 BASIC19.49■□□□□ 0.71
SHMT2P34897 AC113189.1-201ENST00000570444 327 ntTSL 3 BASIC19.49■□□□□ 0.71
SHMT2P34897 VPS53-201ENST00000291074 2656 ntTSL 1 (best) BASIC19.49■□□□□ 0.71
SHMT2P34897 AC005224.2-201ENST00000571192 1885 ntTSL 2 BASIC19.49■□□□□ 0.71
SHMT2P34897 SPNS2-201ENST00000329078 3447 ntAPPRIS P1 TSL 1 (best) BASIC19.49■□□□□ 0.71
SHMT2P34897 FAM170B-201ENST00000311787 1401 ntAPPRIS P1 TSL 1 (best) BASIC19.49■□□□□ 0.71
SHMT2P34897 PDLIM3-212ENST00000620787 2352 ntTSL 4 BASIC19.49■□□□□ 0.71
SHMT2P34897 SNX32-201ENST00000308342 2003 ntAPPRIS P1 TSL 1 (best) BASIC19.49■□□□□ 0.71
SHMT2P34897 PKM-215ENST00000565154 2004 ntAPPRIS ALT1 TSL 2 BASIC19.49■□□□□ 0.71
SHMT2P34897 MAMSTR-203ENST00000594582 1693 ntTSL 1 (best) BASIC19.49■□□□□ 0.71
SHMT2P34897 ESRRA-202ENST00000405666 2283 ntAPPRIS P3 TSL 1 (best) BASIC19.49■□□□□ 0.71
SHMT2P34897 NXN-201ENST00000336868 3036 ntAPPRIS P1 TSL 1 (best) BASIC19.49■□□□□ 0.71
SHMT2P34897 PDCD2-204ENST00000453163 2657 ntTSL 1 (best) BASIC19.48■□□□□ 0.71
SHMT2P34897 BZW1-209ENST00000452790 1473 ntTSL 2 BASIC19.48■□□□□ 0.71
SHMT2P34897 PCSK6-214ENST00000611716 4409 ntAPPRIS P4 TSL 1 (best) BASIC19.48■□□□□ 0.71
SHMT2P34897 SNX18-203ENST00000381410 5218 ntAPPRIS P1 TSL 1 (best) BASIC19.48■□□□□ 0.71
SHMT2P34897 BHLHE22-201ENST00000321870 3262 ntAPPRIS P1 BASIC19.48■□□□□ 0.71
SHMT2P34897 MSANTD1-203ENST00000507492 2289 ntAPPRIS ALT2 TSL 1 (best) BASIC19.48■□□□□ 0.71
SHMT2P34897 DVL1-204ENST00000610709 2268 ntTSL 2 BASIC19.48■□□□□ 0.71
SHMT2P34897 TPCN2-205ENST00000542467 2000 ntTSL 2 BASIC19.48■□□□□ 0.71
SHMT2P34897 PYCR3-202ENST00000377579 985 ntTSL 2 BASIC19.48■□□□□ 0.71
SHMT2P34897 FAM201B-201ENST00000458407 597 ntBASIC19.48■□□□□ 0.71
SHMT2P34897 SLC29A4P2-201ENST00000504749 1089 ntBASIC19.48■□□□□ 0.71
SHMT2P34897 SMIM20-201ENST00000506197 935 ntAPPRIS P1 TSL 1 (best) BASIC19.48■□□□□ 0.71
SHMT2P34897 TPD52L1-207ENST00000527711 999 ntTSL 2 BASIC19.48■□□□□ 0.71
SHMT2P34897 AP003097.1-201ENST00000530657 1135 ntBASIC19.48■□□□□ 0.71
SHMT2P34897 SPI1-204ENST00000533968 1290 ntTSL 1 (best) BASIC19.48■□□□□ 0.71
SHMT2P34897 ZNF688-205ENST00000563707 244 ntTSL 3 BASIC19.48■□□□□ 0.71
SHMT2P34897 DCTPP1-205ENST00000568973 878 ntTSL 2 BASIC19.48■□□□□ 0.71
SHMT2P34897 KCNK17-201ENST00000373231 1658 ntAPPRIS P3 TSL 1 (best) BASIC19.48■□□□□ 0.71
SHMT2P34897 DNAAF3-202ENST00000455045 2318 ntAPPRIS ALT2 TSL 1 (best) BASIC19.48■□□□□ 0.71
SHMT2P34897 UBE2H-201ENST00000355621 5151 ntAPPRIS P1 TSL 1 (best) BASIC19.48■□□□□ 0.71
SHMT2P34897 MON1A-201ENST00000296473 2370 ntAPPRIS P3 TSL 1 (best) BASIC19.48■□□□□ 0.71
SHMT2P34897 RASGRP1-201ENST00000310803 5023 ntAPPRIS P2 TSL 1 (best) BASIC19.48■□□□□ 0.71
SHMT2P34897 RASGRP1-204ENST00000539159 5021 ntAPPRIS ALT1 TSL 5 BASIC19.48■□□□□ 0.71
SHMT2P34897 SLC1A7-201ENST00000371491 1306 ntTSL 1 (best) BASIC19.48■□□□□ 0.71
SHMT2P34897 GNA15-201ENST00000262958 2133 ntAPPRIS P1 TSL 1 (best) BASIC19.48■□□□□ 0.71
SHMT2P34897 FOXI1-202ENST00000449804 2011 ntTSL 1 (best) BASIC19.47■□□□□ 0.71
SHMT2P34897 SNRPA-201ENST00000243563 1621 ntAPPRIS P1 TSL 1 (best) BASIC19.47■□□□□ 0.71
SHMT2P34897 MAP2K5-203ENST00000354498 1783 ntTSL 2 BASIC19.47■□□□□ 0.71
Retrieved 100 of 98,524 protein–RNA pairs in 23.7 ms