Protein–RNA interactions for Protein: P28068

HLA-DMB, HLA class II histocompatibility antigen, DM beta chain, humanhuman

Predictions only

Length 263 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HLA-DMBP28068 CASP6-205ENST00000505486 538 ntTSL 4 BASIC15.17■□□□□ 0.02
HLA-DMBP28068 AP001972.3-201ENST00000530792 495 ntTSL 3 BASIC15.17■□□□□ 0.02
HLA-DMBP28068 MVB12A-212ENST00000543795 1154 ntAPPRIS P1 TSL 5 BASIC15.17■□□□□ 0.02
HLA-DMBP28068 AL591742.1-201ENST00000604433 565 ntBASIC15.17■□□□□ 0.02
HLA-DMBP28068 AC073111.5-205ENST00000641717 521 ntBASIC15.17■□□□□ 0.02
HLA-DMBP28068 FAM91A1-207ENST00000521166 2706 ntTSL 2 BASIC15.17■□□□□ 0.02
HLA-DMBP28068 ARRDC2-201ENST00000222250 2503 ntAPPRIS P1 TSL 1 (best) BASIC15.17■□□□□ 0.02
HLA-DMBP28068 GFER-201ENST00000248114 2345 ntAPPRIS P1 TSL 1 (best) BASIC15.17■□□□□ 0.02
HLA-DMBP28068 C1orf198-201ENST00000366663 3858 ntAPPRIS P3 TSL 1 (best) BASIC15.17■□□□□ 0.02
HLA-DMBP28068 TRMU-201ENST00000290846 1940 ntAPPRIS P1 TSL 1 (best) BASIC15.17■□□□□ 0.02
HLA-DMBP28068 PRPS1-203ENST00000372428 1748 ntTSL 2 BASIC15.17■□□□□ 0.02
HLA-DMBP28068 AC138696.1-201ENST00000522452 2897 ntAPPRIS P1 TSL 1 (best) BASIC15.17■□□□□ 0.02
HLA-DMBP28068 GPR50-AS1-201ENST00000454196 1620 ntTSL 2 BASIC15.17■□□□□ 0.02
HLA-DMBP28068 UBTF-203ENST00000393606 2683 ntTSL 1 (best) BASIC15.17■□□□□ 0.02
HLA-DMBP28068 ARHGEF18-202ENST00000359920 5733 ntAPPRIS ALT2 TSL 2 BASIC15.17■□□□□ 0.02
HLA-DMBP28068 TMEM151A-201ENST00000327259 2562 ntAPPRIS P1 TSL 1 (best) BASIC15.17■□□□□ 0.02
HLA-DMBP28068 TRAPPC12-202ENST00000382110 2483 ntAPPRIS P2 TSL 2 BASIC15.17■□□□□ 0.02
HLA-DMBP28068 DMRT2-205ENST00000382255 2367 ntTSL 1 (best) BASIC15.17■□□□□ 0.02
HLA-DMBP28068 CASP16P-201ENST00000428155 1433 ntTSL 1 (best) BASIC15.17■□□□□ 0.02
HLA-DMBP28068 AMDHD1-201ENST00000266736 2260 ntAPPRIS P1 TSL 1 (best) BASIC15.17■□□□□ 0.02
HLA-DMBP28068 PFKFB3-202ENST00000360521 1964 ntAPPRIS P2 TSL 5 BASIC15.16■□□□□ 0.02
HLA-DMBP28068 ACBD4-203ENST00000398322 1986 ntAPPRIS P1 TSL 1 (best) BASIC15.16■□□□□ 0.02
HLA-DMBP28068 ULK1-201ENST00000321867 5310 ntAPPRIS P1 TSL 1 (best) BASIC15.16■□□□□ 0.02
HLA-DMBP28068 SMAD7-201ENST00000262158 3087 ntAPPRIS P3 TSL 1 (best) BASIC15.16■□□□□ 0.02
HLA-DMBP28068 TGIF1-207ENST00000407501 1585 ntAPPRIS P1 TSL 3 BASIC15.16■□□□□ 0.02
HLA-DMBP28068 DMRT2-201ENST00000259622 2459 ntTSL 2 BASIC15.16■□□□□ 0.02
HLA-DMBP28068 NGLY1-202ENST00000280700 2473 ntAPPRIS P1 TSL 1 (best) BASIC15.16■□□□□ 0.02
HLA-DMBP28068 OGG1-217ENST00000449570 1948 ntTSL 5 BASIC15.16■□□□□ 0.02
HLA-DMBP28068 CEACAM4-201ENST00000221954 1205 ntAPPRIS P2 TSL 1 (best) BASIC15.16■□□□□ 0.02
HLA-DMBP28068 PRSS3-202ENST00000361005 966 ntTSL 1 (best) BASIC15.16■□□□□ 0.02
HLA-DMBP28068 YIF1A-205ENST00000471387 854 ntTSL 5 BASIC15.16■□□□□ 0.02
HLA-DMBP28068 TRIQK-221ENST00000524107 737 ntAPPRIS P1 TSL 3 BASIC15.16■□□□□ 0.02
HLA-DMBP28068 KLK9-202ENST00000594211 754 ntAPPRIS P1 TSL 1 (best) BASIC15.16■□□□□ 0.02
HLA-DMBP28068 CEACAM4-203ENST00000600925 899 ntAPPRIS ALT2 TSL 2 BASIC15.16■□□□□ 0.02
HLA-DMBP28068 AC011767.1-201ENST00000617410 1153 ntBASIC15.16■□□□□ 0.02
HLA-DMBP28068 MSANTD1-203ENST00000507492 2289 ntAPPRIS ALT2 TSL 1 (best) BASIC15.16■□□□□ 0.02
HLA-DMBP28068 NAB2-201ENST00000300131 2711 ntAPPRIS P1 TSL 1 (best) BASIC15.16■□□□□ 0.02
HLA-DMBP28068 TM7SF3-201ENST00000343028 2709 ntAPPRIS P1 TSL 1 (best) BASIC15.16■□□□□ 0.02
HLA-DMBP28068 MEN1-208ENST00000394374 3155 ntAPPRIS P3 TSL 5 BASIC15.16■□□□□ 0.02
HLA-DMBP28068 NDRG2-215ENST00000553503 2162 ntAPPRIS ALT1 TSL 1 (best) BASIC15.16■□□□□ 0.02
HLA-DMBP28068 CAPN1-226ENST00000533820 3083 ntAPPRIS P1 TSL 1 (best) BASIC15.16■□□□□ 0.02
HLA-DMBP28068 ATF5-202ENST00000595125 1637 ntAPPRIS P1 TSL 2 BASIC15.16■□□□□ 0.02
HLA-DMBP28068 METRN-204ENST00000568223 3325 ntAPPRIS P2 TSL 1 (best) BASIC15.16■□□□□ 0.02
HLA-DMBP28068 ADA-201ENST00000372874 1539 ntAPPRIS P1 TSL 1 (best) BASIC15.16■□□□□ 0.02
HLA-DMBP28068 SDK1-202ENST00000404826 10397 ntAPPRIS P2 TSL 1 (best) BASIC15.16■□□□□ 0.02
HLA-DMBP28068 NRL-206ENST00000561028 2103 ntAPPRIS P1 TSL 2 BASIC15.16■□□□□ 0.02
HLA-DMBP28068 CD2AP-201ENST00000359314 5412 ntAPPRIS P1 TSL 1 (best) BASIC15.15■□□□□ 0.02
HLA-DMBP28068 ANHX-202ENST00000545940 3452 ntAPPRIS P1 TSL 5 BASIC15.15■□□□□ 0.02
HLA-DMBP28068 CREB3L3-202ENST00000595923 1491 ntAPPRIS ALT2 TSL 1 (best) BASIC15.15■□□□□ 0.02
HLA-DMBP28068 UGDH-206ENST00000507089 1712 ntTSL 2 BASIC15.15■□□□□ 0.02
HLA-DMBP28068 EPN3-216ENST00000537145 2223 ntTSL 5 BASIC15.15■□□□□ 0.02
HLA-DMBP28068 UBE2F-205ENST00000414443 2100 ntTSL 2 BASIC15.15■□□□□ 0.02
HLA-DMBP28068 TMEM41B-205ENST00000533723 723 ntTSL 2 BASIC15.15■□□□□ 0.02
HLA-DMBP28068 PLLP-204ENST00000569059 665 ntTSL 3 BASIC15.15■□□□□ 0.02
HLA-DMBP28068 LINC02091-201ENST00000576171 1185 ntTSL 5 BASIC15.15■□□□□ 0.02
HLA-DMBP28068 ETHE1-205ENST00000600651 1052 ntTSL 1 (best) BASIC15.15■□□□□ 0.02
HLA-DMBP28068 FSTL1-201ENST00000295633 5943 ntAPPRIS P1 TSL 1 (best) BASIC15.15■□□□□ 0.02
HLA-DMBP28068 ST6GALNAC6-215ENST00000542456 2018 ntTSL 2 BASIC15.15■□□□□ 0.02
HLA-DMBP28068 DVL3-203ENST00000431765 2294 ntTSL 5 BASIC15.15■□□□□ 0.02
HLA-DMBP28068 TMEM259-209ENST00000592590 2509 ntTSL 5 BASIC15.15■□□□□ 0.02
HLA-DMBP28068 ZFP92-201ENST00000338647 6105 ntAPPRIS P1 TSL 5 BASIC15.15■□□□□ 0.02
HLA-DMBP28068 CXorf40A-204ENST00000423421 1403 ntAPPRIS P3 TSL 1 (best) BASIC15.15■□□□□ 0.02
HLA-DMBP28068 BCKDK-202ENST00000287507 1907 ntTSL 1 (best) BASIC15.15■□□□□ 0.02
HLA-DMBP28068 CNOT6-201ENST00000261951 6176 ntAPPRIS P1 TSL 5 BASIC15.15■□□□□ 0.02
HLA-DMBP28068 KMT5B-201ENST00000304363 5837 ntAPPRIS P1 TSL 5 BASIC15.15■□□□□ 0.02
HLA-DMBP28068 MAN2C1-244ENST00000618257 1346 ntTSL 5 BASIC15.15■□□□□ 0.02
HLA-DMBP28068 AKAP8L-201ENST00000397410 2146 ntAPPRIS P1 TSL 1 (best) BASIC15.14■□□□□ 0.01
HLA-DMBP28068 C3orf70-201ENST00000335012 5901 ntAPPRIS P1 TSL 1 (best) BASIC15.14■□□□□ 0.01
HLA-DMBP28068 AIRN-201ENST00000601203 4374 ntBASIC15.14■□□□□ 0.01
HLA-DMBP28068 CSNK1D-203ENST00000392334 2047 ntAPPRIS ALT1 TSL 1 (best) BASIC15.14■□□□□ 0.01
HLA-DMBP28068 ANTXR1-202ENST00000409349 1384 ntTSL 1 (best) BASIC15.14■□□□□ 0.01
HLA-DMBP28068 ADGRL1-202ENST00000361434 5610 ntAPPRIS P3 TSL 1 (best) BASIC15.14■□□□□ 0.01
HLA-DMBP28068 MORN1-202ENST00000378529 1500 ntAPPRIS ALT2 TSL 1 (best) BASIC15.14■□□□□ 0.01
HLA-DMBP28068 CDCA4-202ENST00000392590 1536 ntAPPRIS P1 TSL 1 (best) BASIC15.14■□□□□ 0.01
HLA-DMBP28068 KRT16P3-203ENST00000580621 1939 ntTSL 1 (best) BASIC15.14■□□□□ 0.01
HLA-DMBP28068 DLGAP4-206ENST00000475894 3110 ntAPPRIS ALT2 TSL 2 BASIC15.14■□□□□ 0.01
HLA-DMBP28068 MID2-201ENST00000262843 2876 ntTSL 1 (best) BASIC15.14■□□□□ 0.01
HLA-DMBP28068 TPSAB1-201ENST00000338844 1175 ntAPPRIS P2 TSL 1 (best) BASIC15.14■□□□□ 0.01
HLA-DMBP28068 IL15RA-207ENST00000397250 584 ntTSL 2 BASIC15.14■□□□□ 0.01
HLA-DMBP28068 METTL26-203ENST00000397664 604 ntTSL 2 BASIC15.14■□□□□ 0.01
HLA-DMBP28068 CDCA4P2-201ENST00000441182 718 ntBASIC15.14■□□□□ 0.01
HLA-DMBP28068 ZNRF2P2-202ENST00000442865 590 ntTSL 4 BASIC15.14■□□□□ 0.01
HLA-DMBP28068 AC026185.1-201ENST00000445748 174 ntBASIC15.14■□□□□ 0.01
HLA-DMBP28068 IL15RA-215ENST00000528354 1037 ntTSL 2 BASIC15.14■□□□□ 0.01
HLA-DMBP28068 C11orf24-209ENST00000533310 980 ntAPPRIS ALT2 TSL 5 BASIC15.14■□□□□ 0.01
HLA-DMBP28068 GNAO1-211ENST00000570235 568 ntTSL 2 BASIC15.14■□□□□ 0.01
HLA-DMBP28068 IL15RA-220ENST00000620345 1115 ntAPPRIS ALT2 TSL 1 (best) BASIC15.14■□□□□ 0.01
HLA-DMBP28068 C14orf79-202ENST00000547315 2370 ntAPPRIS P2 TSL 1 (best) BASIC15.14■□□□□ 0.01
HLA-DMBP28068 BST1-202ENST00000382346 1993 ntAPPRIS ALT2 TSL 5 BASIC15.14■□□□□ 0.01
HLA-DMBP28068 ARHGAP8-204ENST00000389774 1725 ntAPPRIS ALT2 TSL 2 BASIC15.14■□□□□ 0.01
HLA-DMBP28068 MOK-225ENST00000522867 1883 ntTSL 5 BASIC15.14■□□□□ 0.01
HLA-DMBP28068 ALKBH7-201ENST00000245812 1332 ntAPPRIS P1 TSL 1 (best) BASIC15.14■□□□□ 0.01
HLA-DMBP28068 MED25-201ENST00000312865 2332 ntAPPRIS P1 TSL 1 (best) BASIC15.14■□□□□ 0.01
HLA-DMBP28068 MAFF-202ENST00000407965 2325 ntAPPRIS P1 TSL 2 BASIC15.14■□□□□ 0.01
HLA-DMBP28068 KCNC3-203ENST00000477616 3176 ntAPPRIS P2 TSL 1 (best) BASIC15.14■□□□□ 0.01
HLA-DMBP28068 RAB28-203ENST00000338176 1787 ntTSL 3 BASIC15.13■□□□□ 0.01
HLA-DMBP28068 RAB34-204ENST00000395245 1766 ntAPPRIS P1 TSL 1 (best) BASIC15.13■□□□□ 0.01
HLA-DMBP28068 GFI1-201ENST00000294702 2784 ntAPPRIS P1 TSL 2 BASIC15.13■□□□□ 0.01
HLA-DMBP28068 AC107959.1-202ENST00000502083 1945 ntTSL 1 (best) BASIC15.13■□□□□ 0.01
HLA-DMBP28068 FMN2-201ENST00000319653 6434 ntAPPRIS P1 TSL 5 BASIC15.13■□□□□ 0.01
Retrieved 100 of 98,524 protein–RNA pairs in 44.6 ms