Protein–RNA interactions for Protein: P18827

SDC1, Syndecan-1, humanhuman

Predictions only

Length 310 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SDC1P18827 GRTP1-201ENST00000326039 1294 ntTSL 1 (best) BASIC18.99■□□□□ 0.63
SDC1P18827 HDAC1-201ENST00000373548 2124 ntAPPRIS P1 TSL 1 (best) BASIC18.99■□□□□ 0.63
SDC1P18827 CTNNAL1-202ENST00000374593 761 ntTSL 3 BASIC18.99■□□□□ 0.63
SDC1P18827 AC093787.1-201ENST00000450396 207 ntBASIC18.99■□□□□ 0.63
SDC1P18827 AC084032.1-201ENST00000552324 578 ntTSL 4 BASIC18.99■□□□□ 0.63
SDC1P18827 AC016588.1-201ENST00000591533 542 ntTSL 4 BASIC18.99■□□□□ 0.63
SDC1P18827 AC022517.1-201ENST00000592429 346 ntBASIC18.99■□□□□ 0.63
SDC1P18827 HIST1H2AL-201ENST00000613174 393 ntAPPRIS P1 BASIC18.99■□□□□ 0.63
SDC1P18827 ADAD1-202ENST00000388724 1912 ntTSL 1 (best) BASIC18.99■□□□□ 0.63
SDC1P18827 ST3GAL3-204ENST00000335430 1805 ntTSL 5 BASIC18.99■□□□□ 0.63
SDC1P18827 FAM57B-204ENST00000564806 1710 ntTSL 2 BASIC18.99■□□□□ 0.63
SDC1P18827 PWWP2AP1-201ENST00000429776 2273 ntBASIC18.99■□□□□ 0.63
SDC1P18827 ESYT2-201ENST00000251527 5960 ntAPPRIS P2 TSL 1 (best) BASIC18.99■□□□□ 0.63
SDC1P18827 ST3GAL3-219ENST00000372374 2170 ntTSL 5 BASIC18.99■□□□□ 0.63
SDC1P18827 RHBDD3-201ENST00000216085 1794 ntAPPRIS P1 TSL 1 (best) BASIC18.98■□□□□ 0.63
SDC1P18827 MFSD10-211ENST00000514800 1776 ntTSL 5 BASIC18.98■□□□□ 0.63
SDC1P18827 SNX8-201ENST00000222990 4727 ntAPPRIS P1 TSL 1 (best) BASIC18.98■□□□□ 0.63
SDC1P18827 ZNF281-202ENST00000367352 2933 ntAPPRIS ALT2 TSL 2 BASIC18.98■□□□□ 0.63
SDC1P18827 CTBP2-205ENST00000411419 2036 ntAPPRIS P1 TSL 1 (best) BASIC18.98■□□□□ 0.63
SDC1P18827 GPR62-201ENST00000322241 2191 ntAPPRIS P1 BASIC18.98■□□□□ 0.63
SDC1P18827 MOB2-201ENST00000329957 1207 ntAPPRIS P1 TSL 2 BASIC18.98■□□□□ 0.63
SDC1P18827 FAM207A-202ENST00000397826 880 ntAPPRIS ALT1 TSL 1 (best) BASIC18.98■□□□□ 0.63
SDC1P18827 GPX1-202ENST00000419783 1146 ntAPPRIS P2 TSL 1 (best) BASIC18.98■□□□□ 0.63
SDC1P18827 AC024267.6-201ENST00000580603 583 ntTSL 3 BASIC18.98■□□□□ 0.63
SDC1P18827 PARD6A-203ENST00000602551 1171 ntTSL 5 BASIC18.98■□□□□ 0.63
SDC1P18827 AL589743.5-201ENST00000616611 1050 ntBASIC18.98■□□□□ 0.63
SDC1P18827 FAM129C-201ENST00000332386 2222 ntAPPRIS ALT2 TSL 1 (best) BASIC18.98■□□□□ 0.63
SDC1P18827 CLN3-205ENST00000359984 1876 ntAPPRIS P1 TSL 1 (best) BASIC18.98■□□□□ 0.63
SDC1P18827 NAPSA-201ENST00000253719 1548 ntAPPRIS P1 TSL 1 (best) BASIC18.98■□□□□ 0.63
SDC1P18827 KRT17P1-201ENST00000399211 1546 ntBASIC18.98■□□□□ 0.63
SDC1P18827 RGS3-232ENST00000620489 1503 ntTSL 1 (best) BASIC18.98■□□□□ 0.63
SDC1P18827 MAPK8IP1-201ENST00000241014 3050 ntAPPRIS P1 TSL 1 (best) BASIC18.98■□□□□ 0.63
SDC1P18827 ETV2-202ENST00000379026 1571 ntAPPRIS ALT2 TSL 2 BASIC18.98■□□□□ 0.63
SDC1P18827 FAM110A-204ENST00000381941 1809 ntAPPRIS P1 TSL 1 (best) BASIC18.97■□□□□ 0.63
SDC1P18827 MAPT-210ENST00000535772 5718 ntTSL 5 BASIC18.97■□□□□ 0.63
SDC1P18827 AC005906.2-203ENST00000640962 2091 ntTSL 5 BASIC18.97■□□□□ 0.63
SDC1P18827 E4F1-201ENST00000301727 2573 ntAPPRIS P1 TSL 1 (best) BASIC18.97■□□□□ 0.63
SDC1P18827 HAUS4-202ENST00000342454 1474 ntTSL 1 (best) BASIC18.97■□□□□ 0.63
SDC1P18827 NRXN1-202ENST00000342183 3315 ntTSL 1 (best) BASIC18.97■□□□□ 0.63
SDC1P18827 CDC42BPB-201ENST00000361246 6758 ntAPPRIS P1 TSL 1 (best) BASIC18.97■□□□□ 0.63
SDC1P18827 RWDD4-206ENST00000512740 1393 ntTSL 5 BASIC18.97■□□□□ 0.63
SDC1P18827 STMN3-201ENST00000370053 2255 ntAPPRIS P1 TSL 1 (best) BASIC18.97■□□□□ 0.63
SDC1P18827 VSX1-201ENST00000376707 943 ntTSL 1 (best) BASIC18.97■□□□□ 0.63
SDC1P18827 METTL26-203ENST00000397664 604 ntTSL 2 BASIC18.97■□□□□ 0.63
SDC1P18827 AC004911.1-201ENST00000416316 871 ntBASIC18.97■□□□□ 0.63
SDC1P18827 YIF1A-205ENST00000471387 854 ntTSL 5 BASIC18.97■□□□□ 0.63
SDC1P18827 HMX1-202ENST00000506970 651 ntTSL 1 (best) BASIC18.97■□□□□ 0.63
SDC1P18827 LINC01956-201ENST00000557729 695 ntTSL 5 BASIC18.97■□□□□ 0.63
SDC1P18827 HAGHL-213ENST00000564545 663 ntTSL 3 BASIC18.97■□□□□ 0.63
SDC1P18827 ANAPC11-212ENST00000577425 603 ntTSL 3 BASIC18.97■□□□□ 0.63
SDC1P18827 BRWD1-AS2-201ENST00000603064 1028 ntBASIC18.97■□□□□ 0.63
SDC1P18827 AC005181.1-201ENST00000604782 1256 ntBASIC18.97■□□□□ 0.63
SDC1P18827 EMC8-202ENST00000435200 1935 ntTSL 2 BASIC18.97■□□□□ 0.63
SDC1P18827 TMEM151A-201ENST00000327259 2562 ntAPPRIS P1 TSL 1 (best) BASIC18.97■□□□□ 0.63
SDC1P18827 MED26-207ENST00000611692 1444 ntTSL 1 (best) BASIC18.97■□□□□ 0.63
SDC1P18827 CBLC-201ENST00000270279 1579 ntAPPRIS P1 TSL 1 (best) BASIC18.97■□□□□ 0.63
SDC1P18827 KCNK4-207ENST00000539216 1723 ntAPPRIS P1 TSL 1 (best) BASIC18.97■□□□□ 0.63
SDC1P18827 NPDC1-202ENST00000371601 1494 ntAPPRIS P2 TSL 1 (best) BASIC18.97■□□□□ 0.63
SDC1P18827 FOXC1-201ENST00000380874 3926 ntAPPRIS P1 BASIC18.96■□□□□ 0.63
SDC1P18827 HTRA4-201ENST00000302495 2095 ntAPPRIS P1 TSL 1 (best) BASIC18.96■□□□□ 0.63
SDC1P18827 EPN3-216ENST00000537145 2223 ntTSL 5 BASIC18.96■□□□□ 0.63
SDC1P18827 TMC6-201ENST00000306591 1681 ntTSL 5 BASIC18.96■□□□□ 0.63
SDC1P18827 C5orf17-202ENST00000512559 1984 ntTSL 2 BASIC18.96■□□□□ 0.63
SDC1P18827 CCDC34-202ENST00000328697 2103 ntAPPRIS ALT2 TSL 1 (best) BASIC18.96■□□□□ 0.63
SDC1P18827 PCMT1-201ENST00000367378 1293 ntAPPRIS P3 TSL 1 (best) BASIC18.96■□□□□ 0.63
SDC1P18827 DNTTIP1-201ENST00000372622 1290 ntAPPRIS P1 TSL 1 (best) BASIC18.96■□□□□ 0.63
SDC1P18827 C19orf81-201ENST00000425202 765 ntAPPRIS P2 TSL 5 BASIC18.96■□□□□ 0.63
SDC1P18827 LINC01117-201ENST00000443670 699 ntTSL 5 BASIC18.96■□□□□ 0.63
SDC1P18827 VSX1-206ENST00000444511 1197 ntTSL 1 (best) BASIC18.96■□□□□ 0.63
SDC1P18827 SMIM20-201ENST00000506197 935 ntAPPRIS P1 TSL 1 (best) BASIC18.96■□□□□ 0.63
SDC1P18827 C2orf69P4-201ENST00000565394 541 ntBASIC18.96■□□□□ 0.63
SDC1P18827 AL032819.3-201ENST00000640283 925 ntAPPRIS P1 TSL 5 BASIC18.96■□□□□ 0.63
SDC1P18827 FNDC5-207ENST00000640867 639 ntAPPRIS P2 TSL 2 BASIC18.96■□□□□ 0.63
SDC1P18827 LSR-214ENST00000621372 2274 ntAPPRIS P4 TSL 1 (best) BASIC18.96■□□□□ 0.63
SDC1P18827 ANKRD2-202ENST00000307518 1449 ntAPPRIS P1 TSL 1 (best) BASIC18.96■□□□□ 0.63
SDC1P18827 TNFRSF25-203ENST00000351959 1441 ntAPPRIS ALT2 TSL 1 (best) BASIC18.96■□□□□ 0.63
SDC1P18827 NTSR2-201ENST00000306928 1569 ntAPPRIS P1 TSL 1 (best) BASIC18.96■□□□□ 0.63
SDC1P18827 RNH1-206ENST00000438658 1725 ntAPPRIS P1 TSL 1 (best) BASIC18.96■□□□□ 0.63
SDC1P18827 SLC11A2-208ENST00000546743 1740 ntTSL 1 (best) BASIC18.96■□□□□ 0.63
SDC1P18827 CD58-203ENST00000457047 1328 ntAPPRIS ALT2 TSL 1 (best) BASIC18.96■□□□□ 0.63
SDC1P18827 WT1-AS-205ENST00000494911 1320 ntTSL 4 BASIC18.96■□□□□ 0.63
SDC1P18827 RAB5C-202ENST00000393860 1912 ntAPPRIS P1 TSL 1 (best) BASIC18.96■□□□□ 0.63
SDC1P18827 CDH5-204ENST00000563425 1932 ntTSL 5 BASIC18.96■□□□□ 0.63
SDC1P18827 GTF2IRD2B-210ENST00000629105 1910 ntTSL 5 BASIC18.96■□□□□ 0.63
SDC1P18827 ACD-201ENST00000219251 2052 ntAPPRIS P3 TSL 2 BASIC18.96■□□□□ 0.63
SDC1P18827 HOXA11-201ENST00000006015 2295 ntAPPRIS P1 TSL 1 (best) BASIC18.95■□□□□ 0.62
SDC1P18827 RNH1-203ENST00000397604 1722 ntAPPRIS P1 TSL 1 (best) BASIC18.95■□□□□ 0.62
SDC1P18827 CXXC5-201ENST00000302517 2658 ntAPPRIS P1 TSL 1 (best) BASIC18.95■□□□□ 0.62
SDC1P18827 MAP3K21-203ENST00000366624 5809 ntAPPRIS P2 TSL 1 (best) BASIC18.95■□□□□ 0.62
SDC1P18827 RBM14-RBM4-201ENST00000412278 1566 ntAPPRIS P1 TSL 2 BASIC18.95■□□□□ 0.62
SDC1P18827 PLEKHM2-202ENST00000375799 4122 ntAPPRIS P2 TSL 1 (best) BASIC18.95■□□□□ 0.62
SDC1P18827 LRRC1-202ENST00000370888 3180 ntAPPRIS P1 TSL 1 (best) BASIC18.95■□□□□ 0.62
SDC1P18827 UBE2C-203ENST00000352551 665 ntTSL 2 BASIC18.95■□□□□ 0.62
SDC1P18827 UNC50-201ENST00000357765 1143 ntAPPRIS P1 TSL 1 (best) BASIC18.95■□□□□ 0.62
SDC1P18827 HLA-G-202ENST00000376815 851 ntBASIC18.95■□□□□ 0.62
SDC1P18827 HLA-G-203ENST00000376818 1127 ntBASIC18.95■□□□□ 0.62
SDC1P18827 CLDN3-201ENST00000395145 1274 ntAPPRIS P1 BASIC18.95■□□□□ 0.62
SDC1P18827 AL512625.2-201ENST00000417533 625 ntBASIC18.95■□□□□ 0.62
SDC1P18827 LYRM1-205ENST00000562740 931 ntTSL 1 (best) BASIC18.95■□□□□ 0.62
SDC1P18827 ZNF263-205ENST00000574253 1139 ntTSL 2 BASIC18.95■□□□□ 0.62
Retrieved 100 of 98,524 protein–RNA pairs in 27 ms