Protein–RNA interactions for Protein: P0CX68

TY1A-LR1, Transposon Ty1-LR1 Gag polyprotein, yeastyeast

Predictions only

Length 440 aa.

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Protein RNA Prediction (catRAPID) Interaction (RIP-Chip)
Gene UniProt Accession Gene Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score Detected Interaction
TY1A-LR1P0CX68 TRM732YMR259C 4263 nt1.66□□□□□ -2.14
TY1A-LR1P0CX68 NUP170YBL079W 4509 nt1.66□□□□□ -2.14
TY1A-LR1P0CX68 CFT1YDR301W 4074 nt1.64□□□□□ -2.15
TY1A-LR1P0CX68 CDC39YCR093W 6327 nt1.63□□□□□ -2.15
TY1A-LR1P0CX68 LAA1YJL207C 6045 nt1.63□□□□□ -2.15
TY1A-LR1P0CX68 YGR130CYGR130C 2451 nt1.63□□□□□ -2.15
TY1A-LR1P0CX68 snR67snR67 82 nt1.61□□□□□ -2.15
TY1A-LR1P0CX68 YOR093CYOR093C 4947 nt1.61□□□□□ -2.15
TY1A-LR1P0CX68 VPS15YBR097W 4365 nt1.6□□□□□ -2.15
TY1A-LR1P0CX68 tT(UGU)HtT(UGU)H 72 nt1.6□□□□□ -2.15
TY1A-LR1P0CX68 YDL114W-AYDL114W-A 114 nt1.59□□□□□ -2.15
TY1A-LR1P0CX68 PEP1YBL017C 4740 nt1.57□□□□□ -2.16
TY1A-LR1P0CX68 YNL284C-BYNL284C-B 5268 nt1.56□□□□□ -2.16
TY1A-LR1P0CX68 NUP192YJL039C 5052 nt1.56□□□□□ -2.16
TY1A-LR1P0CX68 YOR376W-AYOR376W-A 156 nt1.54□□□□□ -2.16
TY1A-LR1P0CX68 SPT7YBR081C 3999 nt1.54□□□□□ -2.16
TY1A-LR1P0CX68 YKL106C-AYKL106C-A 120 nt1.51□□□□□ -2.17
TY1A-LR1P0CX68 SSK2YNR031C 4740 nt1.51□□□□□ -2.17
TY1A-LR1P0CX68 DNF3YMR162C 4971 nt1.5□□□□□ -2.17
TY1A-LR1P0CX68 BRR2YER172C 6492 nt1.48□□□□□ -2.17
TY1A-LR1P0CX68 FAB1YFR019W 6837 nt1.47□□□□□ -2.17
TY1A-LR1P0CX68 FIG2YCR089W 4830 nt1.47□□□□□ -2.17
TY1A-LR1P0CX68 IRA1YBR140C 9279 nt1.45□□□□□ -2.18
TY1A-LR1P0CX68 tQ(UUG)E2tQ(UUG)E2 72 nt1.45□□□□□ -2.18
TY1A-LR1P0CX68 YMR160WYMR160W 2451 nt1.43□□□□□ -2.18
TY1A-LR1P0CX68 tV(UAC)QtV(UAC)Q 76 nt1.42□□□□□ -2.18
TY1A-LR1P0CX68 YMR272W-BYMR272W-B 108 nt1.42□□□□□ -2.18
TY1A-LR1P0CX68 VAM6YDL077C 3150 nt1.42□□□□□ -2.18
TY1A-LR1P0CX68 MEC1YBR136W 7107 nt1.39□□□□□ -2.19
TY1A-LR1P0CX68 YOR192C-BYOR192C-B 5313 nt1.39□□□□□ -2.19
TY1A-LR1P0CX68 SPC110YDR356W 2835 nt1.36□□□□□ -2.19
TY1A-LR1P0CX68 YNL054W-BYNL054W-B 5250 nt1.35□□□□□ -2.19
TY1A-LR1P0CX68 LTE1YAL024C 4308 nt1.34□□□□□ -2.19
TY1A-LR1P0CX68 snR40snR40 97 nt1.34□□□□□ -2.19
TY1A-LR1P0CX68 CCH1YGR217W 6120 nt1.33□□□□□ -2.2
TY1A-LR1P0CX68 HKR1YDR420W 5409 nt1.28□□□□□ -2.21
TY1A-LR1P0CX68 YPR117WYPR117W 7470 nt1.28□□□□□ -2.21
TY1A-LR1P0CX68 RKR1YMR247C 4689 nt1.27□□□□□ -2.21
TY1A-LR1P0CX68 SCC2YDR180W 4482 nt1.24□□□□□ -2.21
TY1A-LR1P0CX68 PAU24YBR301W 363 nt1.17□□□□□ -2.22
TY1A-LR1P0CX68 BEM2YER155C 6504 nt1.14□□□□□ -2.23
TY1A-LR1P0CX68 MLP1YKR095W 5628 nt1.13□□□□□ -2.23
TY1A-LR1P0CX68 YBL100W-BYBL100W-B 5313 nt1.1□□□□□ -2.23
TY1A-LR1P0CX68 snR77snR77 88 nt1.09□□□□□ -2.23
TY1A-LR1P0CX68 YOR316C-AYOR316C-A 210 nt1.09□□□□□ -2.23
TY1A-LR1P0CX68 BUD3YCL014W 4911 nt1.07□□□□□ -2.24
TY1A-LR1P0CX68 MYO1YHR023W 5787 nt1.03□□□□□ -2.25
TY1A-LR1P0CX68 SBH2YER019C-A 267 nt1.02□□□□□ -2.25
TY1A-LR1P0CX68 YOR186C-AYOR186C-A 210 nt1.01□□□□□ -2.25
TY1A-LR1P0CX68 YJR029WYJR029W 5268 nt1□□□□□ -2.25
TY1A-LR1P0CX68 YML100W-AYML100W-A 174 nt0.99□□□□□ -2.25
TY1A-LR1P0CX68 DOP1YDR141C 5097 nt0.97□□□□□ -2.25
TY1A-LR1P0CX68 YPR137C-BYPR137C-B 5268 nt0.92□□□□□ -2.26
TY1A-LR1P0CX68 EMT1tM(CAU)D 73 nt0.91□□□□□ -2.26
TY1A-LR1P0CX68 EMT5tM(CAU)J1 73 nt0.91□□□□□ -2.26
TY1A-LR1P0CX68 EMT3tM(CAU)J2 73 nt0.91□□□□□ -2.26
TY1A-LR1P0CX68 EMT4tM(CAU)M 73 nt0.91□□□□□ -2.26
TY1A-LR1P0CX68 EMT2tM(CAU)O2 73 nt0.91□□□□□ -2.26
TY1A-LR1P0CX68 tH(GUG)E1tH(GUG)E1 72 nt0.89□□□□□ -2.27
TY1A-LR1P0CX68 tH(GUG)E2tH(GUG)E2 72 nt0.89□□□□□ -2.27
TY1A-LR1P0CX68 tH(GUG)G1tH(GUG)G1 72 nt0.89□□□□□ -2.27
TY1A-LR1P0CX68 tH(GUG)G2tH(GUG)G2 72 nt0.89□□□□□ -2.27
TY1A-LR1P0CX68 tH(GUG)HtH(GUG)H 72 nt0.89□□□□□ -2.27
TY1A-LR1P0CX68 tH(GUG)KtH(GUG)K 72 nt0.89□□□□□ -2.27
TY1A-LR1P0CX68 tH(GUG)MtH(GUG)M 72 nt0.89□□□□□ -2.27
TY1A-LR1P0CX68 tV(UAC)BtV(UAC)B 74 nt0.87□□□□□ -2.27
TY1A-LR1P0CX68 tV(UAC)DtV(UAC)D 74 nt0.87□□□□□ -2.27
TY1A-LR1P0CX68 IQG1YPL242C 4488 nt0.83□□□□□ -2.28
TY1A-LR1P0CX68 PAU9YBL108C-A 129 nt0.77□□□□□ -2.29
TY1A-LR1P0CX68 YPR159C-AYPR159C-A 102 nt0.77□□□□□ -2.29
TY1A-LR1P0CX68 IML1YJR138W 4755 nt0.75□□□□□ -2.29
TY1A-LR1P0CX68 UTP20YBL004W 7482 nt0.75□□□□□ -2.29
TY1A-LR1P0CX68 SOV1YMR066W 2697 nt0.73□□□□□ -2.29
TY1A-LR1P0CX68 THO2YNL139C 4794 nt0.71□□□□□ -2.3
TY1A-LR1P0CX68 ESP1YGR098C 4893 nt0.7□□□□□ -2.3
TY1A-LR1P0CX68 snR128snR128 126 nt0.66□□□□□ -2.3
TY1A-LR1P0CX68 UTP10YJL109C 5310 nt0.65□□□□□ -2.3
TY1A-LR1P0CX68 tF(GAA)BtF(GAA)B 73 nt0.6□□□□□ -2.31
TY1A-LR1P0CX68 tF(GAA)FtF(GAA)F 73 nt0.6□□□□□ -2.31
TY1A-LR1P0CX68 tF(GAA)GtF(GAA)G 73 nt0.6□□□□□ -2.31
TY1A-LR1P0CX68 tF(GAA)H1tF(GAA)H1 73 nt0.6□□□□□ -2.31
TY1A-LR1P0CX68 tF(GAA)H2tF(GAA)H2 73 nt0.6□□□□□ -2.31
TY1A-LR1P0CX68 tF(GAA)MtF(GAA)M 73 nt0.6□□□□□ -2.31
TY1A-LR1P0CX68 tF(GAA)P1tF(GAA)P1 73 nt0.6□□□□□ -2.31
TY1A-LR1P0CX68 tF(GAA)P2tF(GAA)P2 73 nt0.6□□□□□ -2.31
TY1A-LR1P0CX68 YMR272W-AYMR272W-A 114 nt0.6□□□□□ -2.31
TY1A-LR1P0CX68 FMP27YLR454W 7887 nt0.58□□□□□ -2.32
TY1A-LR1P0CX68 YJL113WYJL113W 4647 nt0.51□□□□□ -2.33
TY1A-LR1P0CX68 YKL145W-AYKL145W-A 93 nt0.5□□□□□ -2.33
TY1A-LR1P0CX68 YOL014WYOL014W 375 nt0.5□□□□□ -2.33
TY1A-LR1P0CX68 tT(AGU)BtT(AGU)B 73 nt0.48□□□□□ -2.33
TY1A-LR1P0CX68 tT(AGU)CtT(AGU)C 73 nt0.48□□□□□ -2.33
TY1A-LR1P0CX68 tT(AGU)DtT(AGU)D 73 nt0.48□□□□□ -2.33
TY1A-LR1P0CX68 tT(AGU)HtT(AGU)H 73 nt0.48□□□□□ -2.33
TY1A-LR1P0CX68 tT(AGU)I1tT(AGU)I1 73 nt0.48□□□□□ -2.33
TY1A-LR1P0CX68 tT(AGU)I2tT(AGU)I2 73 nt0.48□□□□□ -2.33
TY1A-LR1P0CX68 tT(AGU)JtT(AGU)J 73 nt0.48□□□□□ -2.33
TY1A-LR1P0CX68 tT(AGU)N1tT(AGU)N1 73 nt0.48□□□□□ -2.33
TY1A-LR1P0CX68 tT(AGU)N2tT(AGU)N2 73 nt0.48□□□□□ -2.33
TY1A-LR1P0CX68 tT(AGU)O1tT(AGU)O1 73 nt0.48□□□□□ -2.33
Retrieved 100 of 7,029 protein–RNA pairs in 8.3 ms