Protein–RNA interactions for Protein: A0A5B6

TCRBV3S1, T-cell receptor beta variable 28 (Fragment), humanhuman

Predictions only

Length 114 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TCRBV3S1A0A5B6 SLC7A10-201ENST00000253188 1946 ntAPPRIS P1 TSL 1 (best) BASIC18.67■□□□□ 0.58
TCRBV3S1A0A5B6 FIP1L1-202ENST00000337488 2198 ntTSL 1 (best) BASIC18.67■□□□□ 0.58
TCRBV3S1A0A5B6 FIP1L1-203ENST00000358575 2180 ntAPPRIS P4 TSL 2 BASIC18.67■□□□□ 0.58
TCRBV3S1A0A5B6 TRABD-203ENST00000395827 2172 ntAPPRIS P3 TSL 5 BASIC18.67■□□□□ 0.58
TCRBV3S1A0A5B6 ADAMTS9-202ENST00000459780 2871 ntTSL 1 (best) BASIC18.67■□□□□ 0.58
TCRBV3S1A0A5B6 EARS2-206ENST00000563232 1709 ntTSL 1 (best) BASIC18.67■□□□□ 0.58
TCRBV3S1A0A5B6 UNC93B3-201ENST00000308076 687 ntBASIC18.67■□□□□ 0.58
TCRBV3S1A0A5B6 AC099791.1-201ENST00000416440 715 ntBASIC18.67■□□□□ 0.58
TCRBV3S1A0A5B6 AC091799.1-201ENST00000422823 811 ntBASIC18.67■□□□□ 0.58
TCRBV3S1A0A5B6 AC024257.2-201ENST00000549699 147 ntBASIC18.67■□□□□ 0.58
TCRBV3S1A0A5B6 AC012414.1-201ENST00000556676 535 ntBASIC18.67■□□□□ 0.58
TCRBV3S1A0A5B6 AC008764.7-201ENST00000593779 1081 ntBASIC18.67■□□□□ 0.58
TCRBV3S1A0A5B6 PLCB2-204ENST00000557821 4517 ntAPPRIS ALT1 TSL 1 (best) BASIC18.67■□□□□ 0.58
TCRBV3S1A0A5B6 FAM213A-206ENST00000615554 2213 ntAPPRIS P1 TSL 5 BASIC18.67■□□□□ 0.58
TCRBV3S1A0A5B6 GLS-201ENST00000320717 4834 ntAPPRIS P3 TSL 1 (best) BASIC18.67■□□□□ 0.58
TCRBV3S1A0A5B6 SEPHS1-206ENST00000545675 2988 ntTSL 1 (best) BASIC18.67■□□□□ 0.58
TCRBV3S1A0A5B6 LRCH3-207ENST00000441090 2034 ntTSL 2 BASIC18.67■□□□□ 0.58
TCRBV3S1A0A5B6 CDC42SE2-206ENST00000503291 2025 ntTSL 1 (best) BASIC18.67■□□□□ 0.58
TCRBV3S1A0A5B6 RELB-201ENST00000221452 2294 ntAPPRIS P2 TSL 1 (best) BASIC18.67■□□□□ 0.58
TCRBV3S1A0A5B6 CADPS-201ENST00000283269 4591 ntAPPRIS P4 TSL 1 (best) BASIC18.67■□□□□ 0.58
TCRBV3S1A0A5B6 SYBU-201ENST00000276646 2870 ntAPPRIS ALT2 TSL 1 (best) BASIC18.67■□□□□ 0.58
TCRBV3S1A0A5B6 DUT-201ENST00000331200 2147 ntTSL 1 (best) BASIC18.67■□□□□ 0.58
TCRBV3S1A0A5B6 RGS9BP-201ENST00000334176 2894 ntAPPRIS P1 BASIC18.67■□□□□ 0.58
TCRBV3S1A0A5B6 ANKRD13D-216ENST00000514166 2138 ntTSL 2 BASIC18.67■□□□□ 0.58
TCRBV3S1A0A5B6 COL15A1-201ENST00000375001 5496 ntAPPRIS P2 TSL 1 (best) BASIC18.67■□□□□ 0.58
TCRBV3S1A0A5B6 AKR7A3-201ENST00000361640 1710 ntAPPRIS P1 TSL 1 (best) BASIC18.66■□□□□ 0.58
TCRBV3S1A0A5B6 ZNF274-212ENST00000617501 2538 ntAPPRIS P4 TSL 1 (best) BASIC18.66■□□□□ 0.58
TCRBV3S1A0A5B6 MIXL1-201ENST00000366810 2005 ntAPPRIS P1 TSL 1 (best) BASIC18.66■□□□□ 0.58
TCRBV3S1A0A5B6 LRRC42-203ENST00000371370 2037 ntAPPRIS P1 TSL 2 BASIC18.66■□□□□ 0.58
TCRBV3S1A0A5B6 SEMA6D-205ENST00000389425 2318 ntTSL 1 (best) BASIC18.66■□□□□ 0.58
TCRBV3S1A0A5B6 KCNK6-201ENST00000263372 5722 ntAPPRIS P1 TSL 1 (best) BASIC18.66■□□□□ 0.58
TCRBV3S1A0A5B6 HBEGF-201ENST00000230990 2386 ntAPPRIS P1 TSL 1 (best) BASIC18.66■□□□□ 0.58
TCRBV3S1A0A5B6 PDLIM2-204ENST00000397760 1847 ntAPPRIS P1 TSL 1 (best) BASIC18.66■□□□□ 0.58
TCRBV3S1A0A5B6 PPFIA1-201ENST00000253925 5234 ntAPPRIS P4 TSL 1 (best) BASIC18.66■□□□□ 0.58
TCRBV3S1A0A5B6 CYP26A1-201ENST00000224356 2125 ntAPPRIS P1 TSL 1 (best) BASIC18.66■□□□□ 0.58
TCRBV3S1A0A5B6 DCTPP1-201ENST00000319285 1222 ntAPPRIS P1 TSL 1 (best) BASIC18.66■□□□□ 0.58
TCRBV3S1A0A5B6 EFCAB6-202ENST00000356087 1129 ntTSL 5 BASIC18.66■□□□□ 0.58
TCRBV3S1A0A5B6 C9orf47-202ENST00000375850 859 ntAPPRIS ALT2 TSL 3 BASIC18.66■□□□□ 0.58
TCRBV3S1A0A5B6 ZNF32-202ENST00000395797 1201 ntAPPRIS P1 TSL 2 BASIC18.66■□□□□ 0.58
TCRBV3S1A0A5B6 AC007322.3-201ENST00000426526 701 ntBASIC18.66■□□□□ 0.58
TCRBV3S1A0A5B6 SCO2-204ENST00000543927 1051 ntAPPRIS P1 TSL 2 BASIC18.66■□□□□ 0.58
TCRBV3S1A0A5B6 AC110285.4-201ENST00000572590 424 ntTSL 3 BASIC18.66■□□□□ 0.58
TCRBV3S1A0A5B6 AC006538.2-201ENST00000586572 543 ntAPPRIS P1 TSL 4 BASIC18.66■□□□□ 0.58
TCRBV3S1A0A5B6 B3GALNT2-201ENST00000313984 1874 ntTSL 1 (best) BASIC18.66■□□□□ 0.58
TCRBV3S1A0A5B6 TAF6-211ENST00000453269 2464 ntAPPRIS P1 TSL 1 (best) BASIC18.66■□□□□ 0.58
TCRBV3S1A0A5B6 MMP23B-201ENST00000356026 1326 ntAPPRIS P1 TSL 1 (best) BASIC18.66■□□□□ 0.58
TCRBV3S1A0A5B6 PNKP-215ENST00000600910 1600 ntTSL 5 BASIC18.66■□□□□ 0.58
TCRBV3S1A0A5B6 EPS8L2-230ENST00000610855 1633 ntTSL 5 BASIC18.66■□□□□ 0.58
TCRBV3S1A0A5B6 FAM83E-201ENST00000263266 1926 ntAPPRIS P1 TSL 1 (best) BASIC18.66■□□□□ 0.58
TCRBV3S1A0A5B6 AHCYL1-203ENST00000393614 4313 ntTSL 2 BASIC18.66■□□□□ 0.58
TCRBV3S1A0A5B6 P2RY6-210ENST00000542092 1674 ntAPPRIS P1 TSL 2 BASIC18.66■□□□□ 0.58
TCRBV3S1A0A5B6 MTFP1-201ENST00000266263 1370 ntAPPRIS P1 TSL 1 (best) BASIC18.66■□□□□ 0.58
TCRBV3S1A0A5B6 TMEM175-212ENST00000508204 1399 ntTSL 3 BASIC18.66■□□□□ 0.58
TCRBV3S1A0A5B6 BAIAP2-204ENST00000428708 2095 ntAPPRIS ALT2 TSL 1 (best) BASIC18.65■□□□□ 0.58
TCRBV3S1A0A5B6 CLEC10A-201ENST00000254868 1797 ntAPPRIS P3 TSL 1 (best) BASIC18.65■□□□□ 0.58
TCRBV3S1A0A5B6 CASTOR1-201ENST00000404953 1460 ntTSL 5 BASIC18.65■□□□□ 0.58
TCRBV3S1A0A5B6 PLLP-201ENST00000219207 1512 ntAPPRIS P1 TSL 1 (best) BASIC18.65■□□□□ 0.58
TCRBV3S1A0A5B6 SLC2A7-201ENST00000400906 1539 ntAPPRIS P1 TSL 1 (best) BASIC18.65■□□□□ 0.58
TCRBV3S1A0A5B6 VMAC-201ENST00000339485 2254 ntAPPRIS P1 TSL 1 (best) BASIC18.65■□□□□ 0.58
TCRBV3S1A0A5B6 CASTOR1-202ENST00000407689 1623 ntAPPRIS P1 TSL 1 (best) BASIC18.65■□□□□ 0.58
TCRBV3S1A0A5B6 UBE2C-201ENST00000243893 476 ntTSL 2 BASIC18.65■□□□□ 0.58
TCRBV3S1A0A5B6 ODF3B-201ENST00000329363 970 ntAPPRIS P1 TSL 5 BASIC18.65■□□□□ 0.58
TCRBV3S1A0A5B6 AC010141.2-201ENST00000452426 721 ntBASIC18.65■□□□□ 0.58
TCRBV3S1A0A5B6 DIRAS1-202ENST00000585334 774 ntAPPRIS P1 BASIC18.65■□□□□ 0.58
TCRBV3S1A0A5B6 TEX45-201ENST00000361664 1679 ntAPPRIS P2 TSL 1 (best) BASIC18.65■□□□□ 0.58
TCRBV3S1A0A5B6 SMPD3-203ENST00000563226 2093 ntTSL 1 (best) BASIC18.65■□□□□ 0.58
TCRBV3S1A0A5B6 TCAP-201ENST00000309889 2123 ntAPPRIS P1 TSL 1 (best) BASIC18.65■□□□□ 0.58
TCRBV3S1A0A5B6 KRT86-202ENST00000423955 2217 ntAPPRIS P1 TSL 2 BASIC18.65■□□□□ 0.58
TCRBV3S1A0A5B6 BACE1-204ENST00000445823 1408 ntTSL 1 (best) BASIC18.65■□□□□ 0.58
TCRBV3S1A0A5B6 CCT4-204ENST00000544079 2261 ntTSL 2 BASIC18.65■□□□□ 0.58
TCRBV3S1A0A5B6 AC079598.2-202ENST00000546624 1451 ntBASIC18.65■□□□□ 0.58
TCRBV3S1A0A5B6 ACYP2-203ENST00000406041 1913 ntTSL 1 (best) BASIC18.64■□□□□ 0.58
TCRBV3S1A0A5B6 FAM57A-201ENST00000301324 2013 ntTSL 1 (best) BASIC18.64■□□□□ 0.58
TCRBV3S1A0A5B6 NTSR2-201ENST00000306928 1569 ntAPPRIS P1 TSL 1 (best) BASIC18.64■□□□□ 0.58
TCRBV3S1A0A5B6 UBE2Q2-204ENST00000561851 1582 ntTSL 2 BASIC18.64■□□□□ 0.58
TCRBV3S1A0A5B6 SLC16A3-222ENST00000619321 2015 ntAPPRIS P1 TSL 5 BASIC18.64■□□□□ 0.58
TCRBV3S1A0A5B6 ANKRD17-211ENST00000639793 3486 ntTSL 5 BASIC18.64■□□□□ 0.57
TCRBV3S1A0A5B6 KRT8-216ENST00000552551 2126 ntAPPRIS P1 TSL 2 BASIC18.64■□□□□ 0.57
TCRBV3S1A0A5B6 ZNF510-203ENST00000375231 5616 ntAPPRIS P1 TSL 1 (best) BASIC18.64■□□□□ 0.57
TCRBV3S1A0A5B6 ABI3-202ENST00000419580 1718 ntAPPRIS P1 TSL 5 BASIC18.64■□□□□ 0.57
TCRBV3S1A0A5B6 RAD23A-203ENST00000586534 1746 ntAPPRIS P3 TSL 1 (best) BASIC18.64■□□□□ 0.57
TCRBV3S1A0A5B6 CLASRP-201ENST00000221455 2234 ntAPPRIS P2 TSL 1 (best) BASIC18.64■□□□□ 0.57
TCRBV3S1A0A5B6 COQ10B-201ENST00000263960 2239 ntAPPRIS P1 TSL 1 (best) BASIC18.64■□□□□ 0.57
TCRBV3S1A0A5B6 KRT78-201ENST00000304620 1778 ntAPPRIS P3 TSL 1 (best) BASIC18.64■□□□□ 0.57
TCRBV3S1A0A5B6 TEPSIN-213ENST00000637944 1782 ntAPPRIS ALT2 TSL 5 BASIC18.64■□□□□ 0.57
TCRBV3S1A0A5B6 CBR3-201ENST00000290354 1169 ntAPPRIS P1 TSL 1 (best) BASIC18.64■□□□□ 0.57
TCRBV3S1A0A5B6 HES3-201ENST00000377898 697 ntAPPRIS P1 TSL 2 BASIC18.64■□□□□ 0.57
TCRBV3S1A0A5B6 MOSPD3-204ENST00000424091 1115 ntTSL 1 (best) BASIC18.64■□□□□ 0.57
TCRBV3S1A0A5B6 ZNF436-AS1-206ENST00000518821 461 ntTSL 2 BASIC18.64■□□□□ 0.57
TCRBV3S1A0A5B6 GMPPA-203ENST00000358215 1823 ntAPPRIS P1 TSL 1 (best) BASIC18.64■□□□□ 0.57
TCRBV3S1A0A5B6 SNAP47-201ENST00000315781 2367 ntAPPRIS P3 TSL 1 (best) BASIC18.64■□□□□ 0.57
TCRBV3S1A0A5B6 STMN3-202ENST00000540534 2351 ntTSL 2 BASIC18.64■□□□□ 0.57
TCRBV3S1A0A5B6 PPP1R3F-202ENST00000376188 2443 ntTSL 2 BASIC18.64■□□□□ 0.57
TCRBV3S1A0A5B6 ANKRD65-201ENST00000427211 1976 ntTSL 1 (best) BASIC18.64■□□□□ 0.57
TCRBV3S1A0A5B6 CCDC3-201ENST00000378825 2731 ntAPPRIS P3 TSL 1 (best) BASIC18.64■□□□□ 0.57
TCRBV3S1A0A5B6 ZNF668-202ENST00000394983 2717 ntAPPRIS P1 TSL 5 BASIC18.64■□□□□ 0.57
TCRBV3S1A0A5B6 SLC25A41-201ENST00000321510 1532 ntAPPRIS P1 TSL 5 BASIC18.64■□□□□ 0.57
TCRBV3S1A0A5B6 MTDH-203ENST00000519934 2184 ntTSL 5 BASIC18.64■□□□□ 0.57
TCRBV3S1A0A5B6 RBFOX1-215ENST00000553186 2196 ntTSL 1 (best) BASIC18.64■□□□□ 0.57
TCRBV3S1A0A5B6 PPM1G-201ENST00000344034 2311 ntAPPRIS P1 TSL 1 (best) BASIC18.63■□□□□ 0.57
Retrieved 100 of 98,524 protein–RNA pairs in 21.3 ms