Protein–RNA interactions for Protein: Q96MR9

ZNF560, Zinc finger protein 560, humanhuman

Predictions only

Length 790 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
ZNF560Q96MR9 LINC00273-201ENST00000539813 1452 ntBASIC27.92■■■□□ 2.06
ZNF560Q96MR9 SLC15A4-201ENST00000266771 2779 ntAPPRIS P1 TSL 1 (best) BASIC27.92■■■□□ 2.06
ZNF560Q96MR9 TM6SF1-202ENST00000322019 2074 ntAPPRIS P1 TSL 1 (best) BASIC27.91■■■□□ 2.06
ZNF560Q96MR9 ARMC10-211ENST00000541300 2266 ntTSL 1 (best) BASIC27.91■■■□□ 2.06
ZNF560Q96MR9 SHOX2-204ENST00000483851 1866 ntAPPRIS ALT2 TSL 2 BASIC27.91■■■□□ 2.06
ZNF560Q96MR9 PVT1-219ENST00000523427 938 ntTSL 3 BASIC27.9■■■□□ 2.06
ZNF560Q96MR9 MTMR1-214ENST00000542156 1227 ntTSL 1 (best) BASIC27.9■■■□□ 2.06
ZNF560Q96MR9 JMJD8-202ENST00000562111 823 ntTSL 2 BASIC27.9■■■□□ 2.06
ZNF560Q96MR9 GKAP1-202ENST00000376365 1511 ntTSL 1 (best) BASIC27.9■■■□□ 2.06
ZNF560Q96MR9 SEPT3-203ENST00000396426 2586 ntAPPRIS P4 TSL 1 (best) BASIC27.9■■■□□ 2.06
ZNF560Q96MR9 ZNF513-201ENST00000323703 2139 ntAPPRIS P1 TSL 1 (best) BASIC27.89■■■□□ 2.05
ZNF560Q96MR9 RUNX2-205ENST00000465038 1770 ntAPPRIS P4 TSL 5 BASIC27.88■■■□□ 2.05
ZNF560Q96MR9 TMEM251-202ENST00000415050 1303 ntTSL 2 BASIC27.88■■■□□ 2.05
ZNF560Q96MR9 RDX-210ENST00000530301 1549 ntTSL 1 (best) BASIC27.87■■■□□ 2.05
ZNF560Q96MR9 AC013394.1-201ENST00000629685 808 ntAPPRIS P1 TSL 5 BASIC27.87■■■□□ 2.05
ZNF560Q96MR9 RASSF8-202ENST00000381352 2320 ntTSL 1 (best) BASIC27.87■■■□□ 2.05
ZNF560Q96MR9 BCL7C-201ENST00000215115 1740 ntAPPRIS P1 TSL 1 (best) BASIC27.87■■■□□ 2.05
ZNF560Q96MR9 FEZF2-202ENST00000475839 1918 ntAPPRIS P1 TSL 1 (best) BASIC27.86■■■□□ 2.05
ZNF560Q96MR9 C1QTNF8-201ENST00000328449 1627 ntAPPRIS P1 TSL 5 BASIC27.85■■■□□ 2.05
ZNF560Q96MR9 ZNF787-203ENST00000610935 1925 ntAPPRIS P1 TSL 1 (best) BASIC27.84■■■□□ 2.05
ZNF560Q96MR9 MAZ-208ENST00000563402 1461 ntTSL 5 BASIC27.84■■■□□ 2.05
ZNF560Q96MR9 MAZ-210ENST00000566906 1455 ntTSL 5 BASIC27.84■■■□□ 2.05
ZNF560Q96MR9 AC187653.1-201ENST00000506382 702 ntAPPRIS P1 TSL 5 BASIC27.84■■■□□ 2.05
ZNF560Q96MR9 LINC02323-201ENST00000559946 1603 ntTSL 3 BASIC27.84■■■□□ 2.05
ZNF560Q96MR9 DUX4L11-201ENST00000611504 1267 ntBASIC27.83■■■□□ 2.05
ZNF560Q96MR9 DUX4L12-201ENST00000614593 1267 ntBASIC27.83■■■□□ 2.05
ZNF560Q96MR9 DUX4L14-201ENST00000621227 1267 ntBASIC27.83■■■□□ 2.05
ZNF560Q96MR9 CCDC88C-205ENST00000553403 1651 ntTSL 1 (best) BASIC27.83■■■□□ 2.05
ZNF560Q96MR9 WHRN-203ENST00000374057 1718 ntTSL 2 BASIC27.83■■■□□ 2.05
ZNF560Q96MR9 RNF166-209ENST00000567844 633 ntTSL 5 BASIC27.82■■■□□ 2.04
ZNF560Q96MR9 FKBP1A-210ENST00000614856 562 ntTSL 2 BASIC27.81■■■□□ 2.04
ZNF560Q96MR9 MACF1-219ENST00000484793 834 ntTSL 2 BASIC27.8■■■□□ 2.04
ZNF560Q96MR9 AMN-201ENST00000299155 1907 ntAPPRIS P2 TSL 1 (best) BASIC27.79■■■□□ 2.04
ZNF560Q96MR9 IRX1-201ENST00000302006 1858 ntAPPRIS P1 TSL 1 (best) BASIC27.79■■■□□ 2.04
ZNF560Q96MR9 AP000251.1-201ENST00000433071 822 ntTSL 1 (best) BASIC27.79■■■□□ 2.04
ZNF560Q96MR9 C5orf66-AS1-201ENST00000507035 843 ntTSL 2 BASIC27.79■■■□□ 2.04
ZNF560Q96MR9 TRIM52-AS1-203ENST00000509252 529 ntTSL 3 BASIC27.78■■■□□ 2.04
ZNF560Q96MR9 C11orf95-204ENST00000546282 390 ntTSL 3 BASIC27.78■■■□□ 2.04
ZNF560Q96MR9 NPC2-207ENST00000555619 1035 ntAPPRIS P2 TSL 1 (best) BASIC27.78■■■□□ 2.04
ZNF560Q96MR9 CFAP73-201ENST00000335621 1514 ntAPPRIS P1 TSL 5 BASIC27.77■■■□□ 2.04
ZNF560Q96MR9 MORF4L1-203ENST00000426013 1880 ntAPPRIS P1 TSL 1 (best) BASIC27.77■■■□□ 2.04
ZNF560Q96MR9 AGPS-202ENST00000409888 815 ntTSL 4 BASIC27.77■■■□□ 2.04
ZNF560Q96MR9 MARCH11-201ENST00000332432 1741 ntAPPRIS P1 TSL 5 BASIC27.77■■■□□ 2.04
ZNF560Q96MR9 AGAP3-216ENST00000479901 1881 ntTSL 5 BASIC27.76■■■□□ 2.04
ZNF560Q96MR9 PHOX2A-201ENST00000298231 1699 ntAPPRIS P1 TSL 1 (best) BASIC27.76■■■□□ 2.03
ZNF560Q96MR9 CLEC3B-202ENST00000428034 752 ntTSL 2 BASIC27.76■■■□□ 2.03
ZNF560Q96MR9 AC135983.2-203ENST00000454486 1613 ntBASIC27.74■■■□□ 2.03
ZNF560Q96MR9 ZDHHC16-201ENST00000345745 1519 ntTSL 1 (best) BASIC27.74■■■□□ 2.03
ZNF560Q96MR9 AMZ2-201ENST00000359783 1722 ntTSL 5 BASIC27.73■■■□□ 2.03
ZNF560Q96MR9 PLPPR3-204ENST00000520876 2328 ntAPPRIS ALT2 TSL 1 (best) BASIC27.73■■■□□ 2.03
ZNF560Q96MR9 UBAC1-201ENST00000371756 1867 ntAPPRIS P1 TSL 1 (best) BASIC27.73■■■□□ 2.03
ZNF560Q96MR9 YAP1-204ENST00000526343 2393 ntTSL 5 BASIC27.72■■■□□ 2.03
ZNF560Q96MR9 ADAT3-201ENST00000329478 1620 ntAPPRIS P1 TSL 1 (best) BASIC27.72■■■□□ 2.03
ZNF560Q96MR9 AURKAIP1-203ENST00000338370 1072 ntAPPRIS P1 TSL 1 (best) BASIC27.72■■■□□ 2.03
ZNF560Q96MR9 CCDC160-202ENST00000517294 1790 ntAPPRIS P1 TSL 5 BASIC27.72■■■□□ 2.03
ZNF560Q96MR9 CBX4-201ENST00000269397 2664 ntAPPRIS P2 TSL 1 (best) BASIC27.71■■■□□ 2.03
ZNF560Q96MR9 WNT5A-AS1-201ENST00000469484 500 ntTSL 3 BASIC27.71■■■□□ 2.03
ZNF560Q96MR9 DUX4L13-201ENST00000554103 1267 ntBASIC27.71■■■□□ 2.03
ZNF560Q96MR9 DUX4L15-201ENST00000611059 1267 ntBASIC27.71■■■□□ 2.03
ZNF560Q96MR9 DUX4L23-201ENST00000615195 1269 ntBASIC27.71■■■□□ 2.03
ZNF560Q96MR9 DUX4L24-201ENST00000617576 1269 ntBASIC27.71■■■□□ 2.03
ZNF560Q96MR9 DUX4L22-201ENST00000618238 1269 ntBASIC27.71■■■□□ 2.03
ZNF560Q96MR9 DUX4L20-201ENST00000619712 1269 ntBASIC27.71■■■□□ 2.03
ZNF560Q96MR9 DUX4L21-201ENST00000622058 1269 ntBASIC27.71■■■□□ 2.03
ZNF560Q96MR9 DUX4L10-201ENST00000622460 1267 ntBASIC27.71■■■□□ 2.03
ZNF560Q96MR9 DUX4L25-201ENST00000624915 1269 ntBASIC27.71■■■□□ 2.03
ZNF560Q96MR9 DCBLD1-201ENST00000296955 1979 ntAPPRIS P2 TSL 1 (best) BASIC27.7■■■□□ 2.03
ZNF560Q96MR9 EBPL-201ENST00000242827 914 ntAPPRIS P1 TSL 1 (best) BASIC27.7■■■□□ 2.02
ZNF560Q96MR9 HLA-V-202ENST00000446817 847 ntBASIC27.7■■■□□ 2.02
ZNF560Q96MR9 CHML-204ENST00000638121 920 ntTSL 2 BASIC27.7■■■□□ 2.02
ZNF560Q96MR9 HSD11B1L-202ENST00000339423 1660 ntAPPRIS P3 TSL 1 (best) BASIC27.7■■■□□ 2.02
ZNF560Q96MR9 WHAMMP2-203ENST00000563942 1603 ntBASIC27.7■■■□□ 2.02
ZNF560Q96MR9 RRAD-202ENST00000420652 1476 ntAPPRIS P1 TSL 1 (best) BASIC27.7■■■□□ 2.02
ZNF560Q96MR9 C16orf59-202ENST00000483320 1709 ntAPPRIS ALT2 TSL 2 BASIC27.7■■■□□ 2.02
ZNF560Q96MR9 HSD17B1-201ENST00000225929 1265 ntAPPRIS ALT2 TSL 2 BASIC27.69■■■□□ 2.02
ZNF560Q96MR9 AC231981.1-201ENST00000450917 974 ntTSL 3 BASIC27.69■■■□□ 2.02
ZNF560Q96MR9 MIR3648-2-201ENST00000581792 180 ntBASIC27.69■■■□□ 2.02
ZNF560Q96MR9 MIR3648-1-201ENST00000615959 180 ntBASIC27.69■■■□□ 2.02
ZNF560Q96MR9 CR559946.2-201ENST00000623684 991 ntBASIC27.69■■■□□ 2.02
ZNF560Q96MR9 GDI1-215ENST00000630693 786 ntTSL 4 BASIC27.69■■■□□ 2.02
ZNF560Q96MR9 FOXE3-201ENST00000335071 1981 ntAPPRIS P1 BASIC27.69■■■□□ 2.02
ZNF560Q96MR9 P2RX2-203ENST00000350048 1344 ntTSL 1 (best) BASIC27.68■■■□□ 2.02
ZNF560Q96MR9 RHOC-202ENST00000339083 1418 ntAPPRIS P1 TSL 1 (best) BASIC27.68■■■□□ 2.02
ZNF560Q96MR9 ABCB10P1-201ENST00000614297 2181 ntBASIC27.68■■■□□ 2.02
ZNF560Q96MR9 SLC16A11-201ENST00000308009 1803 ntAPPRIS P2 TSL 1 (best) BASIC27.68■■■□□ 2.02
ZNF560Q96MR9 SLC35D2-203ENST00000375259 1361 ntTSL 1 (best) BASIC27.68■■■□□ 2.02
ZNF560Q96MR9 C2orf88-204ENST00000409870 1441 ntAPPRIS P1 TSL 2 BASIC27.67■■■□□ 2.02
ZNF560Q96MR9 NEUROG2-201ENST00000313341 2287 ntAPPRIS P1 TSL 1 (best) BASIC27.66■■■□□ 2.02
ZNF560Q96MR9 GADD45G-201ENST00000252506 1065 ntAPPRIS P1 TSL 1 (best) BASIC27.66■■■□□ 2.02
ZNF560Q96MR9 ACOT12-204ENST00000513751 612 ntTSL 1 (best) BASIC27.66■■■□□ 2.02
ZNF560Q96MR9 MBP-237ENST00000579129 1052 ntTSL 5 BASIC27.66■■■□□ 2.02
ZNF560Q96MR9 CGREF1-203ENST00000402394 1906 ntAPPRIS P2 TSL 2 BASIC27.66■■■□□ 2.02
ZNF560Q96MR9 PRELID2-207ENST00000511435 1894 ntAPPRIS ALT1 TSL 2 BASIC27.66■■■□□ 2.02
ZNF560Q96MR9 RUNX2-203ENST00000371436 1588 ntAPPRIS ALT2 TSL 5 BASIC27.65■■■□□ 2.02
ZNF560Q96MR9 RANBP1-202ENST00000402752 1132 ntAPPRIS ALT1 TSL 1 (best) BASIC27.65■■■□□ 2.02
ZNF560Q96MR9 ATF4-201ENST00000337304 2019 ntAPPRIS P1 TSL 1 (best) BASIC27.65■■■□□ 2.02
ZNF560Q96MR9 HOXB3-212ENST00000498678 2196 ntAPPRIS P1 TSL 2 BASIC27.65■■■□□ 2.02
ZNF560Q96MR9 KCTD17-202ENST00000403888 1763 ntAPPRIS ALT2 TSL 1 (best) BASIC27.64■■■□□ 2.02
ZNF560Q96MR9 ING2-201ENST00000302327 1189 ntAPPRIS P1 TSL 1 (best) BASIC27.64■■■□□ 2.02
ZNF560Q96MR9 AC016575.1-201ENST00000607026 382 ntBASIC27.64■■■□□ 2.02
Retrieved 100 of 98,524 protein–RNA pairs in 10.1 ms