Protein–RNA interactions for Protein: P28360

MSX1, Homeobox protein MSX-1, humanhuman

Predictions only

Length 303 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MSX1P28360 AC005999.1-201ENST00000414409 588 ntTSL 4 BASIC7.91□□□□□ -1.14
MSX1P28360 AL121990.1-201ENST00000417605 591 ntTSL 3 BASIC7.91□□□□□ -1.14
MSX1P28360 HTR2A-AS1-201ENST00000430913 429 ntTSL 3 BASIC7.91□□□□□ -1.14
MSX1P28360 AC023481.1-201ENST00000435368 938 ntTSL 3 BASIC7.91□□□□□ -1.14
MSX1P28360 GNA14-AS1-201ENST00000439145 605 ntTSL 1 (best) BASIC7.91□□□□□ -1.14
MSX1P28360 AC093155.1-201ENST00000440164 826 ntBASIC7.91□□□□□ -1.14
MSX1P28360 LINC01789-201ENST00000443123 860 ntTSL 5 BASIC7.91□□□□□ -1.14
MSX1P28360 AL080317.1-201ENST00000444259 557 ntTSL 2 BASIC7.91□□□□□ -1.14
MSX1P28360 WDR82P2-201ENST00000444540 928 ntBASIC7.91□□□□□ -1.14
MSX1P28360 YWHABP1-201ENST00000445359 727 ntBASIC7.91□□□□□ -1.14
MSX1P28360 XKRYP5-201ENST00000449659 483 ntBASIC7.91□□□□□ -1.14
MSX1P28360 AC087501.2-201ENST00000466869 581 ntBASIC7.91□□□□□ -1.14
MSX1P28360 AC011979.1-201ENST00000472300 483 ntBASIC7.91□□□□□ -1.14
MSX1P28360 VPS13A-211ENST00000484581 1155 ntTSL 2 BASIC7.91□□□□□ -1.14
MSX1P28360 RN7SL130P-201ENST00000489463 305 ntBASIC7.91□□□□□ -1.14
MSX1P28360 MSMO1-203ENST00000504317 1026 ntTSL 1 (best) BASIC7.91□□□□□ -1.14
MSX1P28360 HMGB3P13-201ENST00000511263 607 ntBASIC7.91□□□□□ -1.14
MSX1P28360 LINC02485-202ENST00000511899 770 ntTSL 3 BASIC7.91□□□□□ -1.14
MSX1P28360 LINC02241-202ENST00000512688 467 ntTSL 3 BASIC7.91□□□□□ -1.14
MSX1P28360 AC106774.1-201ENST00000515105 321 ntBASIC7.91□□□□□ -1.14
MSX1P28360 AC022778.1-201ENST00000518302 545 ntTSL 3 BASIC7.91□□□□□ -1.14
MSX1P28360 AC134043.1-201ENST00000521204 638 ntTSL 3 BASIC7.91□□□□□ -1.14
MSX1P28360 AP003354.1-201ENST00000523791 533 ntTSL 2 BASIC7.91□□□□□ -1.14
MSX1P28360 MTCO3P15-201ENST00000526563 574 ntBASIC7.91□□□□□ -1.14
MSX1P28360 AL354920.1-202ENST00000531661 1017 ntTSL 1 (best) BASIC7.91□□□□□ -1.14
MSX1P28360 BTG1P1-201ENST00000540396 508 ntBASIC7.91□□□□□ -1.14
MSX1P28360 CHURC1-202ENST00000548752 439 ntTSL 2 BASIC7.91□□□□□ -1.14
MSX1P28360 ARPP19-213ENST00000569723 550 ntTSL 4 BASIC7.91□□□□□ -1.14
MSX1P28360 AC118755.1-201ENST00000572923 195 ntTSL 3 BASIC7.91□□□□□ -1.14
MSX1P28360 DYM-207ENST00000578396 755 ntTSL 3 BASIC7.91□□□□□ -1.14
MSX1P28360 AC021382.2-201ENST00000584547 922 ntTSL 3 BASIC7.91□□□□□ -1.14
MSX1P28360 AC008507.1-201ENST00000587506 734 ntBASIC7.91□□□□□ -1.14
MSX1P28360 CD209-211ENST00000602261 939 ntTSL 1 (best) BASIC7.91□□□□□ -1.14
MSX1P28360 AC174071.1-201ENST00000603069 517 ntBASIC7.91□□□□□ -1.14
MSX1P28360 AF146191.1-201ENST00000604941 889 ntBASIC7.91□□□□□ -1.14
MSX1P28360 AL392112.1-201ENST00000605115 829 ntBASIC7.91□□□□□ -1.14
MSX1P28360 AC009994.1-201ENST00000606889 253 ntBASIC7.91□□□□□ -1.14
MSX1P28360 AC104260.1-201ENST00000616660 539 ntBASIC7.91□□□□□ -1.14
MSX1P28360 MIR4278-201ENST00000636094 69 ntBASIC7.91□□□□□ -1.14
MSX1P28360 ZC3H14-203ENST00000318308 1384 ntTSL 1 (best) BASIC7.91□□□□□ -1.14
MSX1P28360 SERPINB9-201ENST00000380698 4118 ntAPPRIS P1 TSL 1 (best) BASIC7.91□□□□□ -1.14
MSX1P28360 USP46-207ENST00000508499 1419 ntTSL 2 BASIC7.91□□□□□ -1.14
MSX1P28360 ANKRD27-201ENST00000306065 4450 ntAPPRIS P1 TSL 1 (best) BASIC7.91□□□□□ -1.14
MSX1P28360 SYNE1-211ENST00000413186 4860 ntTSL 5 BASIC7.91□□□□□ -1.14
MSX1P28360 RTL9-201ENST00000465301 5426 ntAPPRIS P2 TSL 1 (best) BASIC7.91□□□□□ -1.14
MSX1P28360 KCNMA1-203ENST00000354353 5732 ntAPPRIS ALT2 TSL 5 BASIC7.91□□□□□ -1.14
MSX1P28360 SETD5-204ENST00000406341 6582 ntAPPRIS P1 TSL 5 BASIC7.91□□□□□ -1.14
MSX1P28360 LRIG2-201ENST00000361127 11555 ntAPPRIS P1 TSL 1 (best) BASIC7.91□□□□□ -1.14
MSX1P28360 BTK-210ENST00000621635 2767 ntTSL 1 (best) BASIC7.91□□□□□ -1.14
MSX1P28360 MED23-202ENST00000368053 2811 ntTSL 1 (best) BASIC7.91□□□□□ -1.14
MSX1P28360 DLEU1-212ENST00000469754 2955 ntTSL 1 (best) BASIC7.91□□□□□ -1.14
MSX1P28360 MCM8-203ENST00000378886 3835 ntTSL 1 (best) BASIC7.91□□□□□ -1.14
MSX1P28360 ZNF185-212ENST00000539731 4334 ntAPPRIS ALT2 TSL 5 BASIC7.91□□□□□ -1.14
MSX1P28360 CARF-201ENST00000320443 5209 ntTSL 2 BASIC7.9□□□□□ -1.14
MSX1P28360 RNF41-212ENST00000615206 5216 ntAPPRIS P1 TSL 5 BASIC7.9□□□□□ -1.14
MSX1P28360 ITK-201ENST00000422843 4528 ntAPPRIS P1 TSL 1 (best) BASIC7.9□□□□□ -1.14
MSX1P28360 PARP11-204ENST00000447133 4377 ntTSL 2 BASIC7.9□□□□□ -1.14
MSX1P28360 RBM25-205ENST00000527432 3375 ntAPPRIS P1 TSL 1 (best) BASIC7.9□□□□□ -1.14
MSX1P28360 TTLL9-206ENST00000535842 3261 ntAPPRIS P2 TSL 5 BASIC7.9□□□□□ -1.14
MSX1P28360 PFKM-203ENST00000359794 3228 ntAPPRIS P1 TSL 1 (best) BASIC7.9□□□□□ -1.14
MSX1P28360 RCAN1-208ENST00000482533 2686 ntTSL 1 (best) BASIC7.9□□□□□ -1.14
MSX1P28360 ZNF611-206ENST00000595798 2395 ntTSL 1 (best) BASIC7.9□□□□□ -1.14
MSX1P28360 ZNF728-201ENST00000594710 2015 ntAPPRIS P1 TSL 3 BASIC7.9□□□□□ -1.14
MSX1P28360 RFPL4B-201ENST00000441065 1900 ntAPPRIS P1 TSL 2 BASIC7.9□□□□□ -1.14
MSX1P28360 ZNF812P-202ENST00000536819 1890 ntTSL 2 BASIC7.9□□□□□ -1.14
MSX1P28360 FGG-203ENST00000404648 1760 ntAPPRIS P1 TSL 1 (best) BASIC7.9□□□□□ -1.14
MSX1P28360 GRIP1-201ENST00000359742 5216 ntTSL 5 BASIC7.9□□□□□ -1.14
MSX1P28360 MEF2A-203ENST00000449277 5182 ntTSL 5 BASIC7.9□□□□□ -1.14
MSX1P28360 DIEXF-202ENST00000491415 8446 ntAPPRIS P1 TSL 1 (best) BASIC7.9□□□□□ -1.14
MSX1P28360 PSG6-201ENST00000187910 1674 ntAPPRIS ALT2 TSL 1 (best) BASIC7.9□□□□□ -1.14
MSX1P28360 ERG-206ENST00000398911 4914 ntTSL 5 BASIC7.9□□□□□ -1.14
MSX1P28360 GSG1-203ENST00000396302 1628 ntTSL 1 (best) BASIC7.9□□□□□ -1.14
MSX1P28360 AL133243.2-201ENST00000610331 1621 ntBASIC7.9□□□□□ -1.14
MSX1P28360 CDY15P-201ENST00000421995 1570 ntBASIC7.9□□□□□ -1.14
MSX1P28360 CDY22P-201ENST00000451423 1554 ntBASIC7.9□□□□□ -1.14
MSX1P28360 SLC16A12-201ENST00000371790 4617 ntAPPRIS P1 TSL 2 BASIC7.9□□□□□ -1.14
MSX1P28360 AC125793.1-201ENST00000565238 1493 ntTSL 1 (best) BASIC7.9□□□□□ -1.14
MSX1P28360 PPP1R12B-216ENST00000608999 15248 ntAPPRIS P1 TSL 1 (best) BASIC7.9□□□□□ -1.14
MSX1P28360 GLULP5-201ENST00000547831 1390 ntBASIC7.9□□□□□ -1.14
MSX1P28360 CASC19-280ENST00000642102 1351 ntBASIC7.9□□□□□ -1.14
MSX1P28360 AC008033.1-201ENST00000216407 1162 ntBASIC7.9□□□□□ -1.14
MSX1P28360 DFNB59-201ENST00000375129 1202 ntAPPRIS P1 TSL 1 (best) BASIC7.9□□□□□ -1.14
MSX1P28360 TUBD1-204ENST00000376094 1154 ntTSL 1 (best) BASIC7.9□□□□□ -1.14
MSX1P28360 IGLV6-57-201ENST00000390285 353 ntAPPRIS P1 BASIC7.9□□□□□ -1.14
MSX1P28360 TRBV7-5-201ENST00000390382 345 ntBASIC7.9□□□□□ -1.14
MSX1P28360 AC084880.1-201ENST00000392530 545 ntBASIC7.9□□□□□ -1.14
MSX1P28360 HNRNPCP2-201ENST00000399515 881 ntBASIC7.9□□□□□ -1.14
MSX1P28360 UBTFL3-201ENST00000418934 1024 ntBASIC7.9□□□□□ -1.14
MSX1P28360 KRT223P-201ENST00000422957 519 ntTSL 2 BASIC7.9□□□□□ -1.14
MSX1P28360 AL139421.1-201ENST00000423010 169 ntBASIC7.9□□□□□ -1.14
MSX1P28360 ARHGEF7-IT1-201ENST00000423329 804 ntTSL 1 (best) BASIC7.9□□□□□ -1.14
MSX1P28360 AL353801.1-201ENST00000425541 425 ntTSL 3 BASIC7.9□□□□□ -1.14
MSX1P28360 CNOT7P1-201ENST00000429006 852 ntBASIC7.9□□□□□ -1.14
MSX1P28360 LINC01425-202ENST00000430060 760 ntTSL 1 (best) BASIC7.9□□□□□ -1.14
MSX1P28360 TRIM60P3Y-201ENST00000432201 673 ntBASIC7.9□□□□□ -1.14
MSX1P28360 MTND3P21-201ENST00000433774 331 ntBASIC7.9□□□□□ -1.14
MSX1P28360 AC004006.1-201ENST00000434994 377 ntBASIC7.9□□□□□ -1.14
MSX1P28360 AC097358.1-201ENST00000438827 582 ntBASIC7.9□□□□□ -1.14
MSX1P28360 LINC02093-201ENST00000440522 485 ntTSL 5 BASIC7.9□□□□□ -1.14
MSX1P28360 TRIM31-AS1-204ENST00000440874 549 ntTSL 3 BASIC7.9□□□□□ -1.14
Retrieved 100 of 98,524 protein–RNA pairs in 65.2 ms