Protein–RNA interactions for Protein: P28360

MSX1, Homeobox protein MSX-1, humanhuman

Predictions only

Length 303 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MSX1P28360 AL121657.1-201ENST00000327215 531 ntBASIC7.92□□□□□ -1.14
MSX1P28360 Y_RNA.209-201ENST00000364156 111 ntBASIC7.92□□□□□ -1.14
MSX1P28360 EEF1E1-201ENST00000379715 1077 ntAPPRIS P1 TSL 1 (best) BASIC7.92□□□□□ -1.14
MSX1P28360 CFAP61-207ENST00000389656 776 ntAPPRIS ALT2 TSL 1 (best) BASIC7.92□□□□□ -1.14
MSX1P28360 TRGV10-201ENST00000390341 512 ntAPPRIS P1 BASIC7.92□□□□□ -1.14
MSX1P28360 IGBP1-AS2-201ENST00000403371 513 ntTSL 3 BASIC7.92□□□□□ -1.14
MSX1P28360 AL589994.1-201ENST00000404962 340 ntBASIC7.92□□□□□ -1.14
MSX1P28360 RN7SKP152-201ENST00000410444 315 ntBASIC7.92□□□□□ -1.14
MSX1P28360 AL022329.1-201ENST00000412773 488 ntTSL 2 BASIC7.92□□□□□ -1.14
MSX1P28360 AC079150.1-201ENST00000413043 383 ntTSL 3 BASIC7.92□□□□□ -1.14
MSX1P28360 CEACAMP8-201ENST00000413902 580 ntBASIC7.92□□□□□ -1.14
MSX1P28360 VTA1P1-201ENST00000414044 866 ntBASIC7.92□□□□□ -1.14
MSX1P28360 PHBP7-201ENST00000415677 814 ntBASIC7.92□□□□□ -1.14
MSX1P28360 AC012498.1-201ENST00000424037 437 ntBASIC7.92□□□□□ -1.14
MSX1P28360 AC009313.1-201ENST00000425470 503 ntTSL 3 BASIC7.92□□□□□ -1.14
MSX1P28360 TRIM60P10Y-201ENST00000425589 751 ntBASIC7.92□□□□□ -1.14
MSX1P28360 AC009784.1-201ENST00000426484 460 ntBASIC7.92□□□□□ -1.14
MSX1P28360 AC132217.1-201ENST00000430034 373 ntTSL 3 BASIC7.92□□□□□ -1.14
MSX1P28360 HMGB1P31-201ENST00000437242 427 ntBASIC7.92□□□□□ -1.14
MSX1P28360 AL137845.2-201ENST00000444292 988 ntBASIC7.92□□□□□ -1.14
MSX1P28360 RPSAP76-201ENST00000444599 853 ntBASIC7.92□□□□□ -1.14
MSX1P28360 CD200R1L-202ENST00000448932 750 ntAPPRIS ALT2 TSL 5 BASIC7.92□□□□□ -1.14
MSX1P28360 AP000302.1-201ENST00000450928 666 ntTSL 2 BASIC7.92□□□□□ -1.14
MSX1P28360 ATP5A1P7-201ENST00000453978 1279 ntBASIC7.92□□□□□ -1.14
MSX1P28360 SNRPGP9-201ENST00000456025 225 ntBASIC7.92□□□□□ -1.14
MSX1P28360 CST12P-201ENST00000457644 362 ntBASIC7.92□□□□□ -1.14
MSX1P28360 AC063955.1-201ENST00000462872 685 ntBASIC7.92□□□□□ -1.14
MSX1P28360 AL355312.3-201ENST00000472053 312 ntTSL 3 BASIC7.92□□□□□ -1.14
MSX1P28360 AC022336.1-201ENST00000475510 337 ntBASIC7.92□□□□□ -1.14
MSX1P28360 AC116337.2-201ENST00000477662 156 ntBASIC7.92□□□□□ -1.14
MSX1P28360 GAPDHP36-201ENST00000480688 918 ntBASIC7.92□□□□□ -1.14
MSX1P28360 HOXB-AS1-203ENST00000504972 680 ntTSL 3 BASIC7.92□□□□□ -1.14
MSX1P28360 AC096741.2-201ENST00000510225 637 ntTSL 5 BASIC7.92□□□□□ -1.14
MSX1P28360 AC046134.1-201ENST00000514454 666 ntBASIC7.92□□□□□ -1.14
MSX1P28360 MED30-204ENST00000522839 476 ntTSL 1 (best) BASIC7.92□□□□□ -1.14
MSX1P28360 AP000757.1-202ENST00000525260 891 ntTSL 3 BASIC7.92□□□□□ -1.14
MSX1P28360 AC135983.3-201ENST00000528049 1226 ntBASIC7.92□□□□□ -1.14
MSX1P28360 AP001646.2-201ENST00000528645 1156 ntBASIC7.92□□□□□ -1.14
MSX1P28360 AC022509.2-201ENST00000540392 699 ntTSL 3 BASIC7.92□□□□□ -1.14
MSX1P28360 AL157871.6-201ENST00000553954 206 ntTSL 2 BASIC7.92□□□□□ -1.14
MSX1P28360 LINC01588-213ENST00000557142 492 ntTSL 3 BASIC7.92□□□□□ -1.14
MSX1P28360 AC090286.3-201ENST00000573133 187 ntBASIC7.92□□□□□ -1.14
MSX1P28360 AC027763.2-201ENST00000573755 539 ntTSL 4 BASIC7.92□□□□□ -1.14
MSX1P28360 AC044792.1-201ENST00000593294 196 ntBASIC7.92□□□□□ -1.14
MSX1P28360 AC087045.1-201ENST00000605856 382 ntBASIC7.92□□□□□ -1.14
MSX1P28360 PRYP3-202ENST00000607210 444 ntBASIC7.92□□□□□ -1.14
MSX1P28360 AC025031.3-201ENST00000611566 368 ntBASIC7.92□□□□□ -1.14
MSX1P28360 AC024559.2-202ENST00000615240 529 ntTSL 5 BASIC7.92□□□□□ -1.14
MSX1P28360 GZMB-209ENST00000616551 559 ntTSL 2 BASIC7.92□□□□□ -1.14
MSX1P28360 AC006338.1-201ENST00000618453 749 ntBASIC7.92□□□□□ -1.14
MSX1P28360 Metazoa_SRP.176-201ENST00000619772 282 ntBASIC7.92□□□□□ -1.14
MSX1P28360 Metazoa_SRP.42-201ENST00000621081 348 ntBASIC7.92□□□□□ -1.14
MSX1P28360 AL121785.1-201ENST00000624745 708 ntBASIC7.92□□□□□ -1.14
MSX1P28360 INHBA-AS1-201ENST00000415848 3005 ntTSL 1 (best) BASIC7.92□□□□□ -1.14
MSX1P28360 ABCB1-211ENST00000622132 4778 ntAPPRIS P1 TSL 1 (best) BASIC7.92□□□□□ -1.14
MSX1P28360 TCF7L2-221ENST00000545257 2160 ntTSL 1 (best) BASIC7.92□□□□□ -1.14
MSX1P28360 AC011477.1-204ENST00000623416 1325 ntBASIC7.92□□□□□ -1.14
MSX1P28360 JADE1-202ENST00000413543 4012 ntAPPRIS ALT2 TSL 1 (best) BASIC7.92□□□□□ -1.14
MSX1P28360 ZNF559-211ENST00000592504 1398 ntTSL 2 BASIC7.92□□□□□ -1.14
MSX1P28360 FAM196A-202ENST00000522781 4403 ntAPPRIS P1 TSL 2 BASIC7.92□□□□□ -1.14
MSX1P28360 MEF2A-201ENST00000338042 5464 ntAPPRIS ALT1 TSL 2 BASIC7.92□□□□□ -1.14
MSX1P28360 SORCS1-203ENST00000369698 2638 ntTSL 5 BASIC7.92□□□□□ -1.14
MSX1P28360 ZSCAN5B-201ENST00000358992 1626 ntAPPRIS P1 TSL 5 BASIC7.92□□□□□ -1.14
MSX1P28360 ZFYVE9-204ENST00000371591 4874 ntAPPRIS P4 TSL 1 (best) BASIC7.92□□□□□ -1.14
MSX1P28360 TXNRD1-208ENST00000525566 3836 ntTSL 1 (best) BASIC7.92□□□□□ -1.14
MSX1P28360 HK1-203ENST00000360289 3961 ntTSL 5 BASIC7.92□□□□□ -1.14
MSX1P28360 PLA2G4A-201ENST00000367466 2875 ntAPPRIS P1 TSL 1 (best) BASIC7.92□□□□□ -1.14
MSX1P28360 DDAH1-202ENST00000426972 4017 ntTSL 1 (best) BASIC7.92□□□□□ -1.14
MSX1P28360 LINC00927-203ENST00000558913 2878 ntTSL 1 (best) BASIC7.92□□□□□ -1.14
MSX1P28360 CNIH4-205ENST00000465271 4125 ntAPPRIS P3 TSL 1 (best) BASIC7.92□□□□□ -1.14
MSX1P28360 BTBD10-210ENST00000530907 1871 ntAPPRIS ALT1 TSL 2 BASIC7.92□□□□□ -1.14
MSX1P28360 AC013470.2-202ENST00000635746 1895 ntAPPRIS ALT2 TSL 5 BASIC7.92□□□□□ -1.14
MSX1P28360 CRIPT-201ENST00000238892 1953 ntAPPRIS P1 TSL 1 (best) BASIC7.91□□□□□ -1.14
MSX1P28360 FAM13C-217ENST00000618804 3333 ntAPPRIS P3 TSL 1 (best) BASIC7.91□□□□□ -1.14
MSX1P28360 OR7A17-203ENST00000642123 3565 ntAPPRIS P1 BASIC7.91□□□□□ -1.14
MSX1P28360 MKL2-205ENST00000572567 2185 ntTSL 2 BASIC7.91□□□□□ -1.14
MSX1P28360 LOXHD1-211ENST00000579038 3632 ntTSL 1 (best) BASIC7.91□□□□□ -1.14
MSX1P28360 FOXJ3-205ENST00000372573 5309 ntAPPRIS P3 TSL 2 BASIC7.91□□□□□ -1.14
MSX1P28360 LINC01915-201ENST00000577994 2321 ntTSL 2 BASIC7.91□□□□□ -1.14
MSX1P28360 TMEM68-201ENST00000334667 2401 ntTSL 2 BASIC7.91□□□□□ -1.14
MSX1P28360 CDHR3-211ENST00000478080 2633 ntAPPRIS ALT2 TSL 2 BASIC7.91□□□□□ -1.14
MSX1P28360 GLDCP1-201ENST00000510885 2678 ntBASIC7.91□□□□□ -1.14
MSX1P28360 FRMD6-202ENST00000356218 4768 ntAPPRIS P1 TSL 1 (best) BASIC7.91□□□□□ -1.14
MSX1P28360 MARCH6-204ENST00000503788 2874 ntTSL 2 BASIC7.91□□□□□ -1.14
MSX1P28360 OR8D4-202ENST00000641687 2904 ntAPPRIS P1 BASIC7.91□□□□□ -1.14
MSX1P28360 RUNX1T1-249ENST00000613886 7401 ntAPPRIS ALT1 TSL 5 BASIC7.91□□□□□ -1.14
MSX1P28360 GGA3-202ENST00000538886 3766 ntTSL 1 (best) BASIC7.91□□□□□ -1.14
MSX1P28360 TATDN1-201ENST00000276692 1018 ntAPPRIS P1 TSL 1 (best) BASIC7.91□□□□□ -1.14
MSX1P28360 OR4A16-201ENST00000314721 1081 ntAPPRIS P1 BASIC7.91□□□□□ -1.14
MSX1P28360 BTF3-201ENST00000335895 897 ntAPPRIS P1 TSL 1 (best) BASIC7.91□□□□□ -1.14
MSX1P28360 RN7SKP173-201ENST00000362821 315 ntBASIC7.91□□□□□ -1.14
MSX1P28360 MAGOH-201ENST00000371466 500 ntTSL 2 BASIC7.91□□□□□ -1.14
MSX1P28360 TRBV7-4-201ENST00000390369 347 ntAPPRIS P1 BASIC7.91□□□□□ -1.14
MSX1P28360 TRBV7-7-201ENST00000390377 347 ntAPPRIS P1 BASIC7.91□□□□□ -1.14
MSX1P28360 COX6B1-202ENST00000392201 435 ntAPPRIS P1 TSL 3 BASIC7.91□□□□□ -1.14
MSX1P28360 MED28P1-201ENST00000399158 571 ntBASIC7.91□□□□□ -1.14
MSX1P28360 AL133406.1-201ENST00000404904 747 ntBASIC7.91□□□□□ -1.14
MSX1P28360 AL139098.1-201ENST00000407291 389 ntBASIC7.91□□□□□ -1.14
MSX1P28360 RN7SKP154-201ENST00000410136 290 ntBASIC7.91□□□□□ -1.14
MSX1P28360 XKRYP4-201ENST00000414395 483 ntBASIC7.91□□□□□ -1.14
Retrieved 100 of 98,524 protein–RNA pairs in 64.7 ms