Protein–RNA interactions for Protein: P28360

MSX1, Homeobox protein MSX-1, humanhuman

Predictions only

Length 303 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MSX1P28360 SAMD8-201ENST00000372687 6935 ntTSL 1 (best) BASIC7.95□□□□□ -1.14
MSX1P28360 AC107959.2-201ENST00000501897 2636 ntTSL 2 BASIC7.95□□□□□ -1.14
MSX1P28360 FAM217B-201ENST00000358293 5152 ntAPPRIS P2 TSL 2 BASIC7.95□□□□□ -1.14
MSX1P28360 AC003684.1-201ENST00000432442 1715 ntTSL 2 BASIC7.95□□□□□ -1.14
MSX1P28360 CASP8-203ENST00000323492 2650 ntAPPRIS ALT2 TSL 1 (best) BASIC7.95□□□□□ -1.14
MSX1P28360 USP13-203ENST00000496897 2747 ntTSL 2 BASIC7.94□□□□□ -1.14
MSX1P28360 AL161756.1-201ENST00000555861 1751 ntTSL 1 (best) BASIC7.94□□□□□ -1.14
MSX1P28360 AC018557.1-201ENST00000569274 1790 ntTSL 5 BASIC7.94□□□□□ -1.14
MSX1P28360 ZMYND8-219ENST00000611941 5090 ntAPPRIS ALT2 TSL 1 (best) BASIC7.94□□□□□ -1.14
MSX1P28360 FAM19A2-211ENST00000550003 2499 ntTSL 1 (best) BASIC7.94□□□□□ -1.14
MSX1P28360 NVL-203ENST00000391875 2832 ntAPPRIS ALT2 TSL 1 (best) BASIC7.94□□□□□ -1.14
MSX1P28360 AC090983.1-201ENST00000623426 3897 ntBASIC7.94□□□□□ -1.14
MSX1P28360 AC110769.2-201ENST00000602760 1548 ntBASIC7.94□□□□□ -1.14
MSX1P28360 CAPN3-206ENST00000397163 3228 ntAPPRIS ALT1 TSL 1 (best) BASIC7.94□□□□□ -1.14
MSX1P28360 LMO3-204ENST00000354662 3574 ntAPPRIS P1 TSL 2 BASIC7.94□□□□□ -1.14
MSX1P28360 CCDC162P-202ENST00000368966 6751 ntBASIC7.94□□□□□ -1.14
MSX1P28360 AC096642.1-201ENST00000612055 2614 ntBASIC7.94□□□□□ -1.14
MSX1P28360 FRY-207ENST00000542859 13200 ntAPPRIS P1 TSL 5 BASIC7.94□□□□□ -1.14
MSX1P28360 IST1-208ENST00000535424 4082 ntTSL 5 BASIC7.94□□□□□ -1.14
MSX1P28360 AL590491.1-201ENST00000611916 1988 ntTSL 1 (best) BASIC7.94□□□□□ -1.14
MSX1P28360 HSPD1P9-201ENST00000420325 1636 ntBASIC7.94□□□□□ -1.14
MSX1P28360 AKR1C1-202ENST00000380872 6705 ntAPPRIS P1 TSL 1 (best) BASIC7.94□□□□□ -1.14
MSX1P28360 OR5P3-201ENST00000328375 936 ntAPPRIS P1 BASIC7.94□□□□□ -1.14
MSX1P28360 MT-CYB-201ENST00000361789 1141 ntAPPRIS P1 BASIC7.94□□□□□ -1.14
MSX1P28360 RNA5SP74-201ENST00000363538 109 ntBASIC7.94□□□□□ -1.14
MSX1P28360 SCNM1-201ENST00000368902 869 ntTSL 2 BASIC7.94□□□□□ -1.14
MSX1P28360 TRMT13-203ENST00000370143 476 ntTSL 3 BASIC7.94□□□□□ -1.14
MSX1P28360 AL079341.1-201ENST00000404701 1207 ntBASIC7.94□□□□□ -1.14
MSX1P28360 FAM218BP-201ENST00000408897 458 ntBASIC7.94□□□□□ -1.14
MSX1P28360 USP9YP6-201ENST00000413550 854 ntBASIC7.94□□□□□ -1.14
MSX1P28360 BMP2KL-201ENST00000414251 1225 ntBASIC7.94□□□□□ -1.14
MSX1P28360 AC002367.1-201ENST00000416765 405 ntBASIC7.94□□□□□ -1.14
MSX1P28360 SMARCE1P1-201ENST00000417747 1186 ntBASIC7.94□□□□□ -1.14
MSX1P28360 TRBV30-201ENST00000417977 447 ntAPPRIS P1 BASIC7.94□□□□□ -1.14
MSX1P28360 AL357315.1-201ENST00000422930 254 ntTSL 5 BASIC7.94□□□□□ -1.14
MSX1P28360 AC090044.1-201ENST00000423193 497 ntTSL 2 BASIC7.94□□□□□ -1.14
MSX1P28360 NPM1P24-201ENST00000428039 894 ntBASIC7.94□□□□□ -1.14
MSX1P28360 AL354977.2-201ENST00000430387 728 ntTSL 3 BASIC7.94□□□□□ -1.14
MSX1P28360 AL450311.1-201ENST00000434931 576 ntTSL 4 BASIC7.94□□□□□ -1.14
MSX1P28360 Z97634.1-203ENST00000435229 471 ntBASIC7.94□□□□□ -1.14
MSX1P28360 AL353613.1-201ENST00000443163 530 ntTSL 3 BASIC7.94□□□□□ -1.14
MSX1P28360 AL109945.1-201ENST00000448134 687 ntTSL 2 BASIC7.94□□□□□ -1.14
MSX1P28360 BUD31P2-201ENST00000449374 300 ntBASIC7.94□□□□□ -1.14
MSX1P28360 OR51B8P-201ENST00000449892 769 ntBASIC7.94□□□□□ -1.14
MSX1P28360 AC099566.1-212ENST00000451675 799 ntTSL 3 BASIC7.94□□□□□ -1.14
MSX1P28360 USP9YP34-201ENST00000453983 808 ntBASIC7.94□□□□□ -1.14
MSX1P28360 RPL7L1P3-201ENST00000455249 689 ntBASIC7.94□□□□□ -1.14
MSX1P28360 AC006534.1-201ENST00000469329 541 ntBASIC7.94□□□□□ -1.14
MSX1P28360 TSACC-207ENST00000470342 601 ntTSL 2 BASIC7.94□□□□□ -1.14
MSX1P28360 AC109486.1-201ENST00000486833 374 ntBASIC7.94□□□□□ -1.14
MSX1P28360 AC021087.2-201ENST00000504656 1203 ntBASIC7.94□□□□□ -1.14
MSX1P28360 AK4P6-201ENST00000505168 528 ntBASIC7.94□□□□□ -1.14
MSX1P28360 GLRX-203ENST00000505427 632 ntAPPRIS P1 TSL 2 BASIC7.94□□□□□ -1.14
MSX1P28360 LINC02271-202ENST00000506379 596 ntTSL 4 BASIC7.94□□□□□ -1.14
MSX1P28360 AC104663.1-201ENST00000508555 557 ntTSL 2 BASIC7.94□□□□□ -1.14
MSX1P28360 TRIM6-211ENST00000515022 1060 ntTSL 2 BASIC7.94□□□□□ -1.14
MSX1P28360 TCEA1-204ENST00000518784 586 ntTSL 2 BASIC7.94□□□□□ -1.14
MSX1P28360 AC011379.2-201ENST00000523154 583 ntTSL 4 BASIC7.94□□□□□ -1.14
MSX1P28360 AC021006.2-201ENST00000526978 859 ntTSL 3 BASIC7.94□□□□□ -1.14
MSX1P28360 OR4A1P-201ENST00000532342 920 ntBASIC7.94□□□□□ -1.14
MSX1P28360 TPRXL-211ENST00000532880 754 ntTSL 2 BASIC7.94□□□□□ -1.14
MSX1P28360 OR8L1P-201ENST00000534005 955 ntBASIC7.94□□□□□ -1.14
MSX1P28360 AP000619.3-201ENST00000535634 1127 ntBASIC7.94□□□□□ -1.14
MSX1P28360 CLEC4E-206ENST00000545274 730 ntTSL 3 BASIC7.94□□□□□ -1.14
MSX1P28360 AC008147.3-201ENST00000548666 354 ntBASIC7.94□□□□□ -1.14
MSX1P28360 AC092652.2-201ENST00000552220 622 ntTSL 4 BASIC7.94□□□□□ -1.14
MSX1P28360 LINC01491-202ENST00000558792 439 ntTSL 3 BASIC7.94□□□□□ -1.14
MSX1P28360 AC037198.1-201ENST00000560769 281 ntTSL 3 BASIC7.94□□□□□ -1.14
MSX1P28360 TP53TG3HP-201ENST00000563487 346 ntBASIC7.94□□□□□ -1.14
MSX1P28360 BLOC1S6-206ENST00000564765 706 ntTSL 4 BASIC7.94□□□□□ -1.14
MSX1P28360 FRG2JP-201ENST00000568299 832 ntBASIC7.94□□□□□ -1.14
MSX1P28360 TEX51-207ENST00000568484 731 ntAPPRIS P2 TSL 3 BASIC7.94□□□□□ -1.14
MSX1P28360 LINC01476-202ENST00000584262 635 ntTSL 4 BASIC7.94□□□□□ -1.14
MSX1P28360 AC012254.4-201ENST00000588843 273 ntBASIC7.94□□□□□ -1.14
MSX1P28360 AC015802.4-202ENST00000591967 474 ntTSL 3 BASIC7.94□□□□□ -1.14
MSX1P28360 AC112220.3-201ENST00000605502 502 ntBASIC7.94□□□□□ -1.14
MSX1P28360 PRKCQ-AS1-213ENST00000613985 883 ntTSL 5 BASIC7.94□□□□□ -1.14
MSX1P28360 AC245041.1-201ENST00000619523 826 ntTSL 3 BASIC7.94□□□□□ -1.14
MSX1P28360 PRKCQ-AS1-218ENST00000624974 1132 ntTSL 5 BASIC7.94□□□□□ -1.14
MSX1P28360 CASC22-202ENST00000628396 802 ntTSL 5 BASIC7.94□□□□□ -1.14
MSX1P28360 TNFRSF10D-201ENST00000312584 3538 ntAPPRIS P1 TSL 1 (best) BASIC7.94□□□□□ -1.14
MSX1P28360 MCPH1-201ENST00000344683 8039 ntAPPRIS P1 TSL 1 (best) BASIC7.94□□□□□ -1.14
MSX1P28360 PRLR-203ENST00000348262 1339 ntTSL 1 (best) BASIC7.94□□□□□ -1.14
MSX1P28360 SSX2B-204ENST00000616191 1344 ntAPPRIS P1 TSL 5 BASIC7.94□□□□□ -1.14
MSX1P28360 SLC36A3-201ENST00000335230 2456 ntAPPRIS P1 TSL 1 (best) BASIC7.94□□□□□ -1.14
MSX1P28360 CACNB4-239ENST00000636947 5575 ntTSL 1 (best) BASIC7.94□□□□□ -1.14
MSX1P28360 MAP3K20-201ENST00000338983 7179 ntTSL 1 (best) BASIC7.94□□□□□ -1.14
MSX1P28360 FBXW12-204ENST00000445170 1379 ntTSL 1 (best) BASIC7.94□□□□□ -1.14
MSX1P28360 DLG1-202ENST00000357674 4931 ntAPPRIS ALT1 TSL 1 (best) BASIC7.94□□□□□ -1.14
MSX1P28360 FANCM-201ENST00000267430 7111 ntAPPRIS P1 TSL 1 (best) BASIC7.94□□□□□ -1.14
MSX1P28360 OFD1P8Y-201ENST00000449148 1433 ntBASIC7.94□□□□□ -1.14
MSX1P28360 OPTN-204ENST00000378752 3488 ntAPPRIS ALT1 TSL 1 (best) BASIC7.94□□□□□ -1.14
MSX1P28360 NXF4-202ENST00000416098 1465 ntBASIC7.94□□□□□ -1.14
MSX1P28360 AURKA-204ENST00000395907 1902 ntTSL 3 BASIC7.93□□□□□ -1.14
MSX1P28360 PTK2-203ENST00000430260 1940 ntTSL 2 BASIC7.93□□□□□ -1.14
MSX1P28360 BRD7P2-201ENST00000466133 1944 ntBASIC7.93□□□□□ -1.14
MSX1P28360 CCR6-203ENST00000400926 3216 ntAPPRIS P1 TSL 2 BASIC7.93□□□□□ -1.14
MSX1P28360 ELF2P3-201ENST00000445099 1506 ntBASIC7.93□□□□□ -1.14
MSX1P28360 A1CF-201ENST00000282641 9350 ntAPPRIS ALT1 TSL 2 BASIC7.93□□□□□ -1.14
MSX1P28360 MSH4-201ENST00000263187 3266 ntAPPRIS P1 TSL 1 (best) BASIC7.93□□□□□ -1.14
Retrieved 100 of 98,524 protein–RNA pairs in 91.1 ms