Protein–RNA interactions for Protein: P09429

HMGB1, High mobility group protein B1, humanhuman

Known RBP Predictions only

Length 215 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB1P09429 MCM3AP-AS1-204ENST00000432735 2302 ntTSL 2 BASIC8.7□□□□□ -1.02
HMGB1P09429 CDKAL1-201ENST00000274695 3272 ntAPPRIS P1 TSL 1 (best) BASIC8.7□□□□□ -1.02
HMGB1P09429 CLRN1-202ENST00000327047 2359 ntAPPRIS P1 TSL 1 (best) BASIC8.7□□□□□ -1.02
HMGB1P09429 KDM4C-215ENST00000543771 3332 ntTSL 2 BASIC8.7□□□□□ -1.02
HMGB1P09429 TTC39B-208ENST00000512701 10483 ntAPPRIS P3 TSL 2 BASIC8.7□□□□□ -1.02
HMGB1P09429 TIA1-201ENST00000282574 3823 ntTSL 5 BASIC8.7□□□□□ -1.02
HMGB1P09429 BRDT-202ENST00000362005 3409 ntAPPRIS P3 TSL 1 (best) BASIC8.7□□□□□ -1.02
HMGB1P09429 ADH4-212ENST00000629236 1974 ntTSL 5 BASIC8.7□□□□□ -1.02
HMGB1P09429 CNKSR3-205ENST00000607772 21063 ntAPPRIS P1 TSL 1 (best) BASIC8.7□□□□□ -1.02
HMGB1P09429 OR10G4-202ENST00000641521 3623 ntAPPRIS P1 BASIC8.69□□□□□ -1.02
HMGB1P09429 FCGR1B-210ENST00000623603 1581 ntAPPRIS P2 TSL 1 (best) BASIC8.69□□□□□ -1.02
HMGB1P09429 PPARGC1A-217ENST00000613098 3210 ntTSL 1 (best) BASIC8.69□□□□□ -1.02
HMGB1P09429 ALS2-201ENST00000264276 6644 ntAPPRIS P1 TSL 1 (best) BASIC8.69□□□□□ -1.02
HMGB1P09429 INTS7-203ENST00000366994 4417 ntAPPRIS P1 TSL 1 (best) BASIC8.69□□□□□ -1.02
HMGB1P09429 MPP7-201ENST00000337532 5080 ntAPPRIS P1 TSL 5 BASIC8.69□□□□□ -1.02
HMGB1P09429 ATP2C1-208ENST00000504948 4714 ntTSL 1 (best) BASIC8.69□□□□□ -1.02
HMGB1P09429 FAR2-202ENST00000536681 3616 ntAPPRIS P1 TSL 1 (best) BASIC8.69□□□□□ -1.02
HMGB1P09429 GOLGB1-201ENST00000340645 11187 ntAPPRIS P3 TSL 1 (best) BASIC8.69□□□□□ -1.02
HMGB1P09429 ACPP-201ENST00000336375 3125 ntAPPRIS P3 TSL 1 (best) BASIC8.69□□□□□ -1.02
HMGB1P09429 EPS8-209ENST00000542903 1858 ntTSL 2 BASIC8.69□□□□□ -1.02
HMGB1P09429 LINC01108-201ENST00000427276 3152 ntTSL 2 BASIC8.69□□□□□ -1.02
HMGB1P09429 MYRFL-201ENST00000299350 820 ntTSL 5 BASIC8.69□□□□□ -1.02
HMGB1P09429 LELP1-201ENST00000368747 523 ntAPPRIS P1 TSL 1 (best) BASIC8.69□□□□□ -1.02
HMGB1P09429 OR7E91P-201ENST00000400027 866 ntBASIC8.69□□□□□ -1.02
HMGB1P09429 SRSF7-202ENST00000409276 1050 ntTSL 5 BASIC8.69□□□□□ -1.02
HMGB1P09429 C1D-203ENST00000409302 772 ntAPPRIS P1 TSL 5 BASIC8.69□□□□□ -1.02
HMGB1P09429 AC244453.4-201ENST00000419150 388 ntBASIC8.69□□□□□ -1.02
HMGB1P09429 AC015987.1-201ENST00000419211 804 ntTSL 2 BASIC8.69□□□□□ -1.02
HMGB1P09429 AC073188.3-201ENST00000425228 339 ntTSL 2 BASIC8.69□□□□□ -1.02
HMGB1P09429 GRM7-AS2-201ENST00000427748 520 ntTSL 2 BASIC8.69□□□□□ -1.02
HMGB1P09429 PRPS1P2-201ENST00000430496 937 ntBASIC8.69□□□□□ -1.02
HMGB1P09429 AL138787.1-202ENST00000437804 898 ntBASIC8.69□□□□□ -1.02
HMGB1P09429 AC002368.1-201ENST00000456981 388 ntTSL 3 BASIC8.69□□□□□ -1.02
HMGB1P09429 RN7SL251P-201ENST00000464175 297 ntBASIC8.69□□□□□ -1.02
HMGB1P09429 RN7SL58P-201ENST00000473445 294 ntBASIC8.69□□□□□ -1.02
HMGB1P09429 AC109587.1-201ENST00000482368 962 ntTSL 3 BASIC8.69□□□□□ -1.02
HMGB1P09429 AC055733.3-201ENST00000505214 523 ntBASIC8.69□□□□□ -1.02
HMGB1P09429 AC025176.1-201ENST00000510261 365 ntTSL 4 BASIC8.69□□□□□ -1.02
HMGB1P09429 AC018541.1-201ENST00000517706 764 ntTSL 3 BASIC8.69□□□□□ -1.02
HMGB1P09429 IGLVI-42-201ENST00000522485 381 ntBASIC8.69□□□□□ -1.02
HMGB1P09429 AP003472.2-201ENST00000523554 639 ntTSL 3 BASIC8.69□□□□□ -1.02
HMGB1P09429 AC008013.2-201ENST00000537555 348 ntTSL 5 BASIC8.69□□□□□ -1.02
HMGB1P09429 ST20-203ENST00000562759 694 ntAPPRIS P1 TSL 2 BASIC8.69□□□□□ -1.02
HMGB1P09429 PDCD6IPP2-205ENST00000565892 498 ntTSL 2 BASIC8.69□□□□□ -1.02
HMGB1P09429 ZNF730-201ENST00000593635 464 ntTSL 3 BASIC8.69□□□□□ -1.02
HMGB1P09429 AC074135.1-202ENST00000600223 563 ntTSL 3 BASIC8.69□□□□□ -1.02
HMGB1P09429 AL451049.1-201ENST00000608672 497 ntBASIC8.69□□□□□ -1.02
HMGB1P09429 CCL4L2-212ENST00000615418 954 ntTSL 1 (best) BASIC8.69□□□□□ -1.02
HMGB1P09429 AL121985.2-201ENST00000621192 555 ntBASIC8.69□□□□□ -1.02
HMGB1P09429 AC015660.5-201ENST00000623238 564 ntBASIC8.69□□□□□ -1.02
HMGB1P09429 IL31RA-201ENST00000297015 2695 ntAPPRIS ALT2 TSL 5 BASIC8.69□□□□□ -1.02
HMGB1P09429 LMO7-203ENST00000357063 8237 ntAPPRIS ALT2 TSL 5 BASIC8.69□□□□□ -1.02
HMGB1P09429 TLR10-202ENST00000361424 3484 ntAPPRIS P1 TSL 1 (best) BASIC8.69□□□□□ -1.02
HMGB1P09429 SMC2-202ENST00000374787 4266 ntAPPRIS P1 TSL 2 BASIC8.69□□□□□ -1.02
HMGB1P09429 AC087667.1-201ENST00000500180 1422 ntTSL 1 (best) BASIC8.69□□□□□ -1.02
HMGB1P09429 SAMMSON-203ENST00000641005 2168 ntBASIC8.69□□□□□ -1.02
HMGB1P09429 THAP12P3-201ENST00000456373 2266 ntBASIC8.69□□□□□ -1.02
HMGB1P09429 CYP3A43-201ENST00000222382 1515 ntAPPRIS P4 TSL 1 (best) BASIC8.69□□□□□ -1.02
HMGB1P09429 SLC14A1-221ENST00000619403 3823 ntTSL 5 BASIC8.69□□□□□ -1.02
HMGB1P09429 RPL14-201ENST00000338970 7072 ntAPPRIS P1 TSL 1 (best) BASIC8.69□□□□□ -1.02
HMGB1P09429 ERBIN-205ENST00000416865 2351 ntTSL 2 BASIC8.69□□□□□ -1.02
HMGB1P09429 KCNA2-208ENST00000638616 3279 ntAPPRIS P1 TSL 5 BASIC8.69□□□□□ -1.02
HMGB1P09429 C2orf66-201ENST00000342506 1669 ntAPPRIS P1 TSL 1 (best) BASIC8.69□□□□□ -1.02
HMGB1P09429 HSPD1P7-201ENST00000447985 1686 ntBASIC8.69□□□□□ -1.02
HMGB1P09429 FGF9-201ENST00000382353 4220 ntAPPRIS P1 TSL 1 (best) BASIC8.69□□□□□ -1.02
HMGB1P09429 AL512624.2-201ENST00000621705 2566 ntTSL 1 (best) BASIC8.68□□□□□ -1.02
HMGB1P09429 GPR19-201ENST00000332427 1743 ntAPPRIS P1 TSL 4 BASIC8.68□□□□□ -1.02
HMGB1P09429 C11orf54-202ENST00000354421 1733 ntAPPRIS P1 TSL 1 (best) BASIC8.68□□□□□ -1.02
HMGB1P09429 ZCWPW2-201ENST00000383768 1716 ntAPPRIS P2 TSL 1 (best) BASIC8.68□□□□□ -1.02
HMGB1P09429 PRDM2-201ENST00000235372 7957 ntAPPRIS P4 TSL 1 (best) BASIC8.68□□□□□ -1.02
HMGB1P09429 LINC00598-215ENST00000638084 1974 ntTSL 5 BASIC8.68□□□□□ -1.02
HMGB1P09429 AGO1-202ENST00000373206 3996 ntTSL 2 BASIC8.68□□□□□ -1.02
HMGB1P09429 SCN9A-202ENST00000409435 5967 ntAPPRIS ALT1 TSL 5 BASIC8.68□□□□□ -1.02
HMGB1P09429 PPFIBP1-202ENST00000318304 6001 ntTSL 1 (best) BASIC8.68□□□□□ -1.02
HMGB1P09429 LUZP1-203ENST00000418342 8421 ntAPPRIS P1 TSL 5 BASIC8.68□□□□□ -1.02
HMGB1P09429 BEST1-202ENST00000449131 4267 ntTSL 1 (best) BASIC8.68□□□□□ -1.02
HMGB1P09429 PRIM2-207ENST00000615550 2308 ntAPPRIS P1 TSL 1 (best) BASIC8.68□□□□□ -1.02
HMGB1P09429 NDFIP2-206ENST00000620924 2324 ntTSL 1 (best) BASIC8.68□□□□□ -1.02
HMGB1P09429 TBX5-202ENST00000349716 3585 ntTSL 1 (best) BASIC8.68□□□□□ -1.02
HMGB1P09429 CYP2C18-201ENST00000285979 2418 ntAPPRIS P1 TSL 1 (best) BASIC8.68□□□□□ -1.02
HMGB1P09429 POGZ-204ENST00000392723 6152 ntTSL 1 (best) BASIC8.68□□□□□ -1.02
HMGB1P09429 NUP214-202ENST00000411637 7538 ntAPPRIS ALT2 TSL 1 (best) BASIC8.68□□□□□ -1.02
HMGB1P09429 ENSA-204ENST00000356527 2546 ntTSL 1 (best) BASIC8.68□□□□□ -1.02
HMGB1P09429 OR52A1-201ENST00000328942 939 ntAPPRIS P1 BASIC8.68□□□□□ -1.02
HMGB1P09429 SNORA73B-201ENST00000363217 204 ntBASIC8.68□□□□□ -1.02
HMGB1P09429 C1orf54-203ENST00000369102 1251 ntAPPRIS P1 TSL 5 BASIC8.68□□□□□ -1.02
HMGB1P09429 HHLA3-203ENST00000370940 775 ntAPPRIS ALT2 TSL 1 (best) BASIC8.68□□□□□ -1.02
HMGB1P09429 RNU2-22P-201ENST00000411266 212 ntBASIC8.68□□□□□ -1.02
HMGB1P09429 AC084030.1-202ENST00000413385 880 ntTSL 5 BASIC8.68□□□□□ -1.02
HMGB1P09429 TRIM60P17-201ENST00000415181 719 ntBASIC8.68□□□□□ -1.02
HMGB1P09429 FDPSP1-201ENST00000424976 1071 ntBASIC8.68□□□□□ -1.02
HMGB1P09429 LINC01049-201ENST00000426840 742 ntTSL 1 (best) BASIC8.68□□□□□ -1.02
HMGB1P09429 AC090505.2-201ENST00000427064 464 ntTSL 3 BASIC8.68□□□□□ -1.02
HMGB1P09429 AL604028.1-201ENST00000430643 598 ntTSL 2 BASIC8.68□□□□□ -1.02
HMGB1P09429 AL357552.2-201ENST00000433876 353 ntTSL 5 BASIC8.68□□□□□ -1.02
HMGB1P09429 LINC00444-201ENST00000435617 215 ntTSL 5 BASIC8.68□□□□□ -1.02
HMGB1P09429 Z84478.1-201ENST00000438230 1219 ntBASIC8.68□□□□□ -1.02
HMGB1P09429 AL136988.2-201ENST00000440729 861 ntTSL 3 BASIC8.68□□□□□ -1.02
HMGB1P09429 TRBV5-4-201ENST00000454561 544 ntAPPRIS P1 BASIC8.68□□□□□ -1.02
HMGB1P09429 AL358176.1-201ENST00000457477 357 ntTSL 5 BASIC8.68□□□□□ -1.02
Retrieved 100 of 98,524 protein–RNA pairs in 101.4 ms