Protein–RNA interactions for Protein: Q9Y5E6

PCDHB3, Protocadherin beta-3, humanhuman

Predictions only

Length 796 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PCDHB3Q9Y5E6 ISCA1-203ENST00000375991 1958 ntAPPRIS P1 TSL 1 (best) BASIC19.54■□□□□ 0.72
PCDHB3Q9Y5E6 TSC22D3-205ENST00000372390 1812 ntTSL 1 (best) BASIC19.54■□□□□ 0.72
PCDHB3Q9Y5E6 ETHE1-201ENST00000292147 963 ntAPPRIS P1 TSL 1 (best) BASIC19.54■□□□□ 0.72
PCDHB3Q9Y5E6 ANKRD39-201ENST00000393537 976 ntAPPRIS P1 TSL 1 (best) BASIC19.54■□□□□ 0.72
PCDHB3Q9Y5E6 GCSHP5-201ENST00000443090 522 ntBASIC19.54■□□□□ 0.72
PCDHB3Q9Y5E6 STPG4-207ENST00000445927 891 ntAPPRIS P1 TSL 5 BASIC19.54■□□□□ 0.72
PCDHB3Q9Y5E6 AC128676.1-201ENST00000454392 318 ntBASIC19.54■□□□□ 0.72
PCDHB3Q9Y5E6 AC026366.1-201ENST00000488803 879 ntBASIC19.54■□□□□ 0.72
PCDHB3Q9Y5E6 CDC123-201ENST00000281141 1542 ntAPPRIS P1 TSL 1 (best) BASIC19.54■□□□□ 0.72
PCDHB3Q9Y5E6 FP700111.2-201ENST00000619190 1892 ntBASIC19.54■□□□□ 0.72
PCDHB3Q9Y5E6 CYP26A1-201ENST00000224356 2125 ntAPPRIS P1 TSL 1 (best) BASIC19.54■□□□□ 0.72
PCDHB3Q9Y5E6 CELF2-211ENST00000632065 1952 ntTSL 1 (best) BASIC19.53■□□□□ 0.72
PCDHB3Q9Y5E6 GPR35-201ENST00000319838 2249 ntAPPRIS P3 TSL 2 BASIC19.53■□□□□ 0.72
PCDHB3Q9Y5E6 SOX12-201ENST00000342665 4630 ntAPPRIS P1 BASIC19.53■□□□□ 0.72
PCDHB3Q9Y5E6 CENPS-CORT-204ENST00000602296 1326 ntTSL 3 BASIC19.53■□□□□ 0.72
PCDHB3Q9Y5E6 XBP1-203ENST00000403532 1824 ntAPPRIS ALT1 TSL 3 BASIC19.53■□□□□ 0.72
PCDHB3Q9Y5E6 PYCR1-216ENST00000619204 1904 ntAPPRIS P1 TSL 1 (best) BASIC19.53■□□□□ 0.72
PCDHB3Q9Y5E6 GAS8-202ENST00000536122 1687 ntTSL 2 BASIC19.53■□□□□ 0.72
PCDHB3Q9Y5E6 CXorf40A-204ENST00000423421 1403 ntAPPRIS P3 TSL 1 (best) BASIC19.53■□□□□ 0.72
PCDHB3Q9Y5E6 IDH1-205ENST00000446179 2298 ntAPPRIS P1 TSL 1 (best) BASIC19.53■□□□□ 0.72
PCDHB3Q9Y5E6 MSANTD1-203ENST00000507492 2289 ntAPPRIS ALT2 TSL 1 (best) BASIC19.53■□□□□ 0.72
PCDHB3Q9Y5E6 DVL1-204ENST00000610709 2268 ntTSL 2 BASIC19.53■□□□□ 0.72
PCDHB3Q9Y5E6 P4HB-201ENST00000331483 2603 ntAPPRIS P1 TSL 1 (best) BASIC19.53■□□□□ 0.72
PCDHB3Q9Y5E6 FBXO6-201ENST00000376753 1520 ntAPPRIS P1 TSL 1 (best) BASIC19.53■□□□□ 0.72
PCDHB3Q9Y5E6 FAM167B-201ENST00000373582 936 ntAPPRIS P1 TSL 1 (best) BASIC19.53■□□□□ 0.72
PCDHB3Q9Y5E6 GTF2A2-203ENST00000396061 758 ntAPPRIS P1 TSL 2 BASIC19.53■□□□□ 0.72
PCDHB3Q9Y5E6 AC007040.1-201ENST00000416229 477 ntTSL 3 BASIC19.53■□□□□ 0.72
PCDHB3Q9Y5E6 CCDC107-206ENST00000426546 1242 ntAPPRIS P3 TSL 1 (best) BASIC19.53■□□□□ 0.72
PCDHB3Q9Y5E6 GATS-209ENST00000454084 1030 ntTSL 3 BASIC19.53■□□□□ 0.72
PCDHB3Q9Y5E6 AC098590.1-201ENST00000468126 897 ntBASIC19.53■□□□□ 0.72
PCDHB3Q9Y5E6 DBNL-220ENST00000494774 2117 ntAPPRIS P4 TSL 1 (best) BASIC19.53■□□□□ 0.72
PCDHB3Q9Y5E6 TMEM9B-203ENST00000528117 949 ntTSL 2 BASIC19.53■□□□□ 0.72
PCDHB3Q9Y5E6 AL356020.1-201ENST00000554235 1076 ntTSL 5 BASIC19.53■□□□□ 0.72
PCDHB3Q9Y5E6 C14orf144-202ENST00000555282 854 ntTSL 3 BASIC19.53■□□□□ 0.72
PCDHB3Q9Y5E6 TIMM50-213ENST00000599794 786 ntTSL 2 BASIC19.53■□□□□ 0.72
PCDHB3Q9Y5E6 ZGPAT-203ENST00000357119 1896 ntTSL 1 (best) BASIC19.53■□□□□ 0.72
PCDHB3Q9Y5E6 SMOC2-206ENST00000535039 1875 ntTSL 5 BASIC19.53■□□□□ 0.72
PCDHB3Q9Y5E6 DTD1-201ENST00000377452 1387 ntAPPRIS P1 TSL 1 (best) BASIC19.53■□□□□ 0.72
PCDHB3Q9Y5E6 TMEM11-201ENST00000317635 2095 ntAPPRIS P1 TSL 1 (best) BASIC19.53■□□□□ 0.72
PCDHB3Q9Y5E6 POLD2-201ENST00000223361 1597 ntTSL 5 BASIC19.53■□□□□ 0.72
PCDHB3Q9Y5E6 HOXA11-201ENST00000006015 2295 ntAPPRIS P1 TSL 1 (best) BASIC19.53■□□□□ 0.72
PCDHB3Q9Y5E6 AC008105.1-201ENST00000587534 2003 ntTSL 2 BASIC19.52■□□□□ 0.72
PCDHB3Q9Y5E6 KATNAL2-208ENST00000592005 1348 ntTSL 1 (best) BASIC19.52■□□□□ 0.72
PCDHB3Q9Y5E6 DLGAP4-204ENST00000373913 5056 ntAPPRIS P4 TSL 1 (best) BASIC19.52■□□□□ 0.72
PCDHB3Q9Y5E6 JMJD4-202ENST00000438896 2502 ntTSL 2 BASIC19.52■□□□□ 0.72
PCDHB3Q9Y5E6 TDRP-203ENST00000523656 2622 ntTSL 5 BASIC19.52■□□□□ 0.72
PCDHB3Q9Y5E6 CCSAP-203ENST00000366687 5089 ntAPPRIS P1 TSL 1 (best) BASIC19.52■□□□□ 0.72
PCDHB3Q9Y5E6 HNRNPA3-204ENST00000435711 1731 ntAPPRIS P3 TSL 1 (best) BASIC19.52■□□□□ 0.72
PCDHB3Q9Y5E6 HCFC1R1-202ENST00000354679 765 ntTSL 2 BASIC19.52■□□□□ 0.72
PCDHB3Q9Y5E6 ZNRF2P2-202ENST00000442865 590 ntTSL 4 BASIC19.52■□□□□ 0.72
PCDHB3Q9Y5E6 HES2-205ENST00000487437 968 ntTSL 3 BASIC19.52■□□□□ 0.72
PCDHB3Q9Y5E6 UNC93B5-201ENST00000530315 699 ntBASIC19.52■□□□□ 0.72
PCDHB3Q9Y5E6 AP003097.1-201ENST00000530657 1135 ntBASIC19.52■□□□□ 0.72
PCDHB3Q9Y5E6 HLA-B-256ENST00000639848 1089 ntBASIC19.52■□□□□ 0.72
PCDHB3Q9Y5E6 CBLN2-201ENST00000269503 2945 ntAPPRIS P1 TSL 1 (best) BASIC19.52■□□□□ 0.72
PCDHB3Q9Y5E6 LONRF3-202ENST00000371628 2550 ntAPPRIS P1 TSL 1 (best) BASIC19.52■□□□□ 0.72
PCDHB3Q9Y5E6 LEF1-203ENST00000438313 1488 ntAPPRIS ALT1 TSL 1 (best) BASIC19.52■□□□□ 0.72
PCDHB3Q9Y5E6 MAST1-208ENST00000591495 1496 ntTSL 5 BASIC19.52■□□□□ 0.72
PCDHB3Q9Y5E6 SERBP1-201ENST00000361219 2103 ntAPPRIS ALT1 TSL 1 (best) BASIC19.52■□□□□ 0.72
PCDHB3Q9Y5E6 GFER-201ENST00000248114 2345 ntAPPRIS P1 TSL 1 (best) BASIC19.52■□□□□ 0.71
PCDHB3Q9Y5E6 DXO-202ENST00000375349 1667 ntAPPRIS P1 TSL 5 BASIC19.52■□□□□ 0.71
PCDHB3Q9Y5E6 NRXN1-226ENST00000626899 2543 ntTSL 2 BASIC19.52■□□□□ 0.71
PCDHB3Q9Y5E6 AC069431.1-201ENST00000488882 1877 ntTSL 5 BASIC19.52■□□□□ 0.71
PCDHB3Q9Y5E6 LGI3-202ENST00000424267 3114 ntTSL 1 (best) BASIC19.51■□□□□ 0.71
PCDHB3Q9Y5E6 CALY-201ENST00000252939 2271 ntAPPRIS P1 TSL 1 (best) BASIC19.51■□□□□ 0.71
PCDHB3Q9Y5E6 SRSF4-201ENST00000373795 2387 ntAPPRIS P2 TSL 1 (best) BASIC19.51■□□□□ 0.71
PCDHB3Q9Y5E6 AP003356.1-202ENST00000517910 2770 ntTSL 2 BASIC19.51■□□□□ 0.71
PCDHB3Q9Y5E6 TRAPPC5-204ENST00000596148 5498 ntAPPRIS P1 TSL 1 (best) BASIC19.51■□□□□ 0.71
PCDHB3Q9Y5E6 AC099778.1-201ENST00000568593 1911 ntBASIC19.51■□□□□ 0.71
PCDHB3Q9Y5E6 RUVBL2-206ENST00000595090 2009 ntAPPRIS P1 TSL 1 (best) BASIC19.51■□□□□ 0.71
PCDHB3Q9Y5E6 ME3-202ENST00000393324 2240 ntAPPRIS P1 TSL 1 (best) BASIC19.51■□□□□ 0.71
PCDHB3Q9Y5E6 ADGRL1-202ENST00000361434 5610 ntAPPRIS P3 TSL 1 (best) BASIC19.51■□□□□ 0.71
PCDHB3Q9Y5E6 TTC12-202ENST00000393020 2541 ntTSL 5 BASIC19.51■□□□□ 0.71
PCDHB3Q9Y5E6 NCBP2-207ENST00000452404 1133 ntTSL 2 BASIC19.51■□□□□ 0.71
PCDHB3Q9Y5E6 RTBDN-203ENST00000458671 1066 ntAPPRIS ALT2 TSL 1 (best) BASIC19.51■□□□□ 0.71
PCDHB3Q9Y5E6 ABCC3-217ENST00000515707 656 ntTSL 3 BASIC19.51■□□□□ 0.71
PCDHB3Q9Y5E6 RRAS2-203ENST00000526063 970 ntTSL 1 (best) BASIC19.51■□□□□ 0.71
PCDHB3Q9Y5E6 RRAS2-208ENST00000532814 982 ntTSL 1 (best) BASIC19.51■□□□□ 0.71
PCDHB3Q9Y5E6 MAGIX-206ENST00000615626 1057 ntTSL 1 (best) BASIC19.51■□□□□ 0.71
PCDHB3Q9Y5E6 POLE2-202ENST00000539565 1792 ntTSL 1 (best) BASIC19.51■□□□□ 0.71
PCDHB3Q9Y5E6 NFYC-204ENST00000372653 1862 ntTSL 2 BASIC19.51■□□□□ 0.71
PCDHB3Q9Y5E6 PRMT2-210ENST00000458387 1874 ntTSL 1 (best) BASIC19.51■□□□□ 0.71
PCDHB3Q9Y5E6 INSM2-201ENST00000307169 3013 ntAPPRIS P1 BASIC19.51■□□□□ 0.71
PCDHB3Q9Y5E6 NXN-201ENST00000336868 3036 ntAPPRIS P1 TSL 1 (best) BASIC19.51■□□□□ 0.71
PCDHB3Q9Y5E6 PAN3-201ENST00000380958 2833 ntAPPRIS P2 TSL 5 BASIC19.51■□□□□ 0.71
PCDHB3Q9Y5E6 AC112907.3-201ENST00000577781 2400 ntBASIC19.51■□□□□ 0.71
PCDHB3Q9Y5E6 NFKBIE-204ENST00000619360 2327 ntAPPRIS P1 TSL 1 (best) BASIC19.51■□□□□ 0.71
PCDHB3Q9Y5E6 RTN4RL2-201ENST00000335099 2203 ntAPPRIS P1 TSL 1 (best) BASIC19.51■□□□□ 0.71
PCDHB3Q9Y5E6 TMEM189-201ENST00000371650 2222 ntAPPRIS ALT1 TSL 1 (best) BASIC19.51■□□□□ 0.71
PCDHB3Q9Y5E6 UBAP1-204ENST00000625521 2029 ntTSL 2 BASIC19.51■□□□□ 0.71
PCDHB3Q9Y5E6 ACY1-207ENST00000476854 1319 ntTSL 3 BASIC19.51■□□□□ 0.71
PCDHB3Q9Y5E6 IL17RE-206ENST00000454190 2757 ntTSL 2 BASIC19.5■□□□□ 0.71
PCDHB3Q9Y5E6 GTPBP3-222ENST00000600625 2493 ntTSL 1 (best) BASIC19.5■□□□□ 0.71
PCDHB3Q9Y5E6 CYP2A7-202ENST00000301146 2281 ntAPPRIS P1 TSL 1 (best) BASIC19.5■□□□□ 0.71
PCDHB3Q9Y5E6 LAG3-202ENST00000441671 1576 ntAPPRIS ALT2 TSL 1 (best) BASIC19.5■□□□□ 0.71
PCDHB3Q9Y5E6 SPHK2-213ENST00000601712 1394 ntAPPRIS ALT2 TSL 5 BASIC19.5■□□□□ 0.71
PCDHB3Q9Y5E6 OLFM1-202ENST00000277415 1014 ntTSL 1 (best) BASIC19.5■□□□□ 0.71
PCDHB3Q9Y5E6 IGHV3-33-201ENST00000390615 431 ntAPPRIS P1 BASIC19.5■□□□□ 0.71
PCDHB3Q9Y5E6 MDK-205ENST00000405308 1166 ntAPPRIS P2 TSL 2 BASIC19.5■□□□□ 0.71
PCDHB3Q9Y5E6 GPX1-202ENST00000419783 1146 ntAPPRIS P2 TSL 1 (best) BASIC19.5■□□□□ 0.71
Retrieved 100 of 98,524 protein–RNA pairs in 31.8 ms