Protein–RNA interactions for Protein: Q9Y3P4

RHBDD3, Rhomboid domain-containing protein 3, humanhuman

Predictions only

Length 386 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RHBDD3Q9Y3P4 SLC6A11-202ENST00000454147 2794 ntTSL 1 (best) BASIC17.47■□□□□ 0.39
RHBDD3Q9Y3P4 CADPS2-202ENST00000334010 6045 ntAPPRIS ALT2 TSL 5 BASIC17.47■□□□□ 0.39
RHBDD3Q9Y3P4 CERKL-203ENST00000374969 1330 ntTSL 1 (best) BASIC17.47■□□□□ 0.39
RHBDD3Q9Y3P4 SLC39A4-201ENST00000276833 2297 ntTSL 2 BASIC17.46■□□□□ 0.39
RHBDD3Q9Y3P4 CCDC62-204ENST00000392441 2936 ntAPPRIS ALT2 TSL 5 BASIC17.46■□□□□ 0.39
RHBDD3Q9Y3P4 AGO4-201ENST00000373210 7116 ntAPPRIS P1 TSL 1 (best) BASIC17.46■□□□□ 0.39
RHBDD3Q9Y3P4 CLN3-240ENST00000631023 1586 ntTSL 5 BASIC17.46■□□□□ 0.39
RHBDD3Q9Y3P4 AC008687.4-201ENST00000637680 1485 ntAPPRIS P1 TSL 5 BASIC17.46■□□□□ 0.39
RHBDD3Q9Y3P4 CITED1-201ENST00000246139 1231 ntAPPRIS P3 TSL 1 (best) BASIC17.46■□□□□ 0.39
RHBDD3Q9Y3P4 AP001972.3-201ENST00000530792 495 ntTSL 3 BASIC17.46■□□□□ 0.39
RHBDD3Q9Y3P4 NRL-206ENST00000561028 2103 ntAPPRIS P1 TSL 2 BASIC17.46■□□□□ 0.39
RHBDD3Q9Y3P4 LINC01976-201ENST00000565120 434 ntTSL 2 BASIC17.46■□□□□ 0.39
RHBDD3Q9Y3P4 AL162412.1-201ENST00000567129 965 ntBASIC17.46■□□□□ 0.39
RHBDD3Q9Y3P4 ABHD13-201ENST00000375898 5338 ntAPPRIS P1 TSL 1 (best) BASIC17.46■□□□□ 0.39
RHBDD3Q9Y3P4 CDC42SE2-206ENST00000503291 2025 ntTSL 1 (best) BASIC17.46■□□□□ 0.39
RHBDD3Q9Y3P4 GFI1-201ENST00000294702 2784 ntAPPRIS P1 TSL 2 BASIC17.46■□□□□ 0.39
RHBDD3Q9Y3P4 NAP1L4-212ENST00000526115 1941 ntTSL 2 BASIC17.46■□□□□ 0.39
RHBDD3Q9Y3P4 INTS11-202ENST00000411962 1832 ntTSL 5 BASIC17.46■□□□□ 0.39
RHBDD3Q9Y3P4 FAM167A-207ENST00000534308 1642 ntAPPRIS P1 TSL 1 (best) BASIC17.46■□□□□ 0.39
RHBDD3Q9Y3P4 AC008073.3-201ENST00000610442 2281 ntAPPRIS P1 TSL 2 BASIC17.46■□□□□ 0.39
RHBDD3Q9Y3P4 CADPS-201ENST00000283269 4591 ntAPPRIS P4 TSL 1 (best) BASIC17.46■□□□□ 0.39
RHBDD3Q9Y3P4 CLIP3-206ENST00000593074 2080 ntAPPRIS P1 TSL 2 BASIC17.46■□□□□ 0.39
RHBDD3Q9Y3P4 IQSEC2-218ENST00000640694 5958 ntAPPRIS ALT2 TSL 5 BASIC17.46■□□□□ 0.38
RHBDD3Q9Y3P4 ASCC1-205ENST00000394919 2683 ntAPPRIS P1 TSL 2 BASIC17.45■□□□□ 0.38
RHBDD3Q9Y3P4 SBNO2-201ENST00000361757 4923 ntAPPRIS P4 TSL 1 (best) BASIC17.45■□□□□ 0.38
RHBDD3Q9Y3P4 MAPK9-201ENST00000343111 4369 ntTSL 5 BASIC17.45■□□□□ 0.38
RHBDD3Q9Y3P4 MADCAM1-201ENST00000215637 1572 ntAPPRIS P4 TSL 1 (best) BASIC17.45■□□□□ 0.38
RHBDD3Q9Y3P4 MTMR14-201ENST00000296003 2494 ntAPPRIS P4 TSL 1 (best) BASIC17.45■□□□□ 0.38
RHBDD3Q9Y3P4 SPAG16-204ENST00000413312 2258 ntTSL 5 BASIC17.45■□□□□ 0.38
RHBDD3Q9Y3P4 ANTXR1-202ENST00000409349 1384 ntTSL 1 (best) BASIC17.45■□□□□ 0.38
RHBDD3Q9Y3P4 ZNF821-211ENST00000564134 1748 ntTSL 5 BASIC17.45■□□□□ 0.38
RHBDD3Q9Y3P4 SORCS3-201ENST00000369699 5530 ntAPPRIS P1 TSL 5 BASIC17.45■□□□□ 0.38
RHBDD3Q9Y3P4 TOR1A-201ENST00000351698 2076 ntAPPRIS P1 TSL 1 (best) BASIC17.45■□□□□ 0.38
RHBDD3Q9Y3P4 UTF1-201ENST00000304477 1157 ntAPPRIS P1 TSL 1 (best) BASIC17.45■□□□□ 0.38
RHBDD3Q9Y3P4 MRPL39-201ENST00000307301 1199 ntAPPRIS ALT2 TSL 5 BASIC17.45■□□□□ 0.38
RHBDD3Q9Y3P4 SOCS1-201ENST00000332029 1225 ntAPPRIS P1 TSL 1 (best) BASIC17.45■□□□□ 0.38
RHBDD3Q9Y3P4 MRPL39-202ENST00000352957 1110 ntAPPRIS P3 TSL 1 (best) BASIC17.45■□□□□ 0.38
RHBDD3Q9Y3P4 CTNNAL1-202ENST00000374593 761 ntTSL 3 BASIC17.45■□□□□ 0.38
RHBDD3Q9Y3P4 TNFRSF18-203ENST00000379268 1179 ntAPPRIS ALT2 TSL 1 (best) BASIC17.45■□□□□ 0.38
RHBDD3Q9Y3P4 DHRS4L2-204ENST00000537912 918 ntTSL 2 BASIC17.45■□□□□ 0.38
RHBDD3Q9Y3P4 AC024267.6-201ENST00000580603 583 ntTSL 3 BASIC17.45■□□□□ 0.38
RHBDD3Q9Y3P4 GGTLC3-201ENST00000619998 968 ntAPPRIS P1 TSL 5 BASIC17.45■□□□□ 0.38
RHBDD3Q9Y3P4 GDF6-203ENST00000621429 1179 ntTSL 5 BASIC17.45■□□□□ 0.38
RHBDD3Q9Y3P4 CNRIP1-201ENST00000263655 1953 ntAPPRIS P1 TSL 1 (best) BASIC17.45■□□□□ 0.38
RHBDD3Q9Y3P4 MAFG-201ENST00000357736 5040 ntAPPRIS P1 TSL 1 (best) BASIC17.45■□□□□ 0.38
RHBDD3Q9Y3P4 OSR2-210ENST00000523368 1519 ntTSL 1 (best) BASIC17.45■□□□□ 0.38
RHBDD3Q9Y3P4 SHROOM1-202ENST00000378676 2352 ntAPPRIS ALT2 TSL 5 BASIC17.45■□□□□ 0.38
RHBDD3Q9Y3P4 GPR35-202ENST00000403859 2032 ntAPPRIS P3 TSL 2 BASIC17.45■□□□□ 0.38
RHBDD3Q9Y3P4 ASMTL-206ENST00000534940 2048 ntTSL 2 BASIC17.45■□□□□ 0.38
RHBDD3Q9Y3P4 AC116562.4-201ENST00000641316 2276 ntBASIC17.45■□□□□ 0.38
RHBDD3Q9Y3P4 AHCYL1-203ENST00000393614 4313 ntTSL 2 BASIC17.45■□□□□ 0.38
RHBDD3Q9Y3P4 AL158211.5-201ENST00000623583 2518 ntBASIC17.45■□□□□ 0.38
RHBDD3Q9Y3P4 PITPNC1-201ENST00000299954 6359 ntAPPRIS ALT2 TSL 5 BASIC17.45■□□□□ 0.38
RHBDD3Q9Y3P4 STEAP1-201ENST00000297205 1313 ntAPPRIS P1 TSL 1 (best) BASIC17.45■□□□□ 0.38
RHBDD3Q9Y3P4 SLMAP-201ENST00000295951 5433 ntAPPRIS P1 TSL 5 BASIC17.45■□□□□ 0.38
RHBDD3Q9Y3P4 ADARB1-201ENST00000348831 6882 ntAPPRIS P1 TSL 1 (best) BASIC17.45■□□□□ 0.38
RHBDD3Q9Y3P4 DNASE1L2-203ENST00000564065 2194 ntTSL 1 (best) BASIC17.45■□□□□ 0.38
RHBDD3Q9Y3P4 TGIF1-207ENST00000407501 1585 ntAPPRIS P1 TSL 3 BASIC17.45■□□□□ 0.38
RHBDD3Q9Y3P4 RNF8-204ENST00000469731 1800 ntTSL 5 BASIC17.44■□□□□ 0.38
RHBDD3Q9Y3P4 ZNF281-202ENST00000367352 2933 ntAPPRIS ALT2 TSL 2 BASIC17.44■□□□□ 0.38
RHBDD3Q9Y3P4 LTBP4-201ENST00000204005 5032 ntAPPRIS ALT2 TSL 1 (best) BASIC17.44■□□□□ 0.38
RHBDD3Q9Y3P4 P2RX2-201ENST00000343948 1494 ntAPPRIS P4 TSL 1 (best) BASIC17.44■□□□□ 0.38
RHBDD3Q9Y3P4 IKZF1-209ENST00000438033 1748 ntTSL 2 BASIC17.44■□□□□ 0.38
RHBDD3Q9Y3P4 PCDHB11-202ENST00000624887 1973 ntTSL 2 BASIC17.44■□□□□ 0.38
RHBDD3Q9Y3P4 WNT7B-204ENST00000410089 2202 ntTSL 5 BASIC17.44■□□□□ 0.38
RHBDD3Q9Y3P4 KMT5B-204ENST00000402185 1881 ntTSL 2 BASIC17.44■□□□□ 0.38
RHBDD3Q9Y3P4 GAS2L1P2-201ENST00000436355 1356 ntBASIC17.44■□□□□ 0.38
RHBDD3Q9Y3P4 PNKP-214ENST00000600573 1602 ntTSL 5 BASIC17.44■□□□□ 0.38
RHBDD3Q9Y3P4 BHLHE22-201ENST00000321870 3262 ntAPPRIS P1 BASIC17.44■□□□□ 0.38
RHBDD3Q9Y3P4 UBXN11-201ENST00000314675 2254 ntAPPRIS ALT2 TSL 2 BASIC17.44■□□□□ 0.38
RHBDD3Q9Y3P4 UBE2C-201ENST00000243893 476 ntTSL 2 BASIC17.44■□□□□ 0.38
RHBDD3Q9Y3P4 BX890604.1-207ENST00000486571 904 ntTSL 5 BASIC17.44■□□□□ 0.38
RHBDD3Q9Y3P4 SLC35A2-211ENST00000634461 533 ntTSL 4 BASIC17.44■□□□□ 0.38
RHBDD3Q9Y3P4 AC093762.2-201ENST00000641700 291 ntAPPRIS P1 BASIC17.44■□□□□ 0.38
RHBDD3Q9Y3P4 MAPK8IP3-202ENST00000356010 4456 ntTSL 5 BASIC17.44■□□□□ 0.38
RHBDD3Q9Y3P4 NFE2L1-204ENST00000536222 2172 ntTSL 2 BASIC17.44■□□□□ 0.38
RHBDD3Q9Y3P4 CXorf40A-204ENST00000423421 1403 ntAPPRIS P3 TSL 1 (best) BASIC17.44■□□□□ 0.38
RHBDD3Q9Y3P4 AC068338.2-201ENST00000563278 1430 ntBASIC17.44■□□□□ 0.38
RHBDD3Q9Y3P4 AMIGO1-202ENST00000369864 5088 ntAPPRIS P1 TSL 1 (best) BASIC17.44■□□□□ 0.38
RHBDD3Q9Y3P4 KLC1-219ENST00000555836 2467 ntTSL 5 BASIC17.44■□□□□ 0.38
RHBDD3Q9Y3P4 RFT1-202ENST00000394738 1800 ntTSL 5 BASIC17.44■□□□□ 0.38
RHBDD3Q9Y3P4 HYLS1-203ENST00000526028 1803 ntAPPRIS P1 TSL 5 BASIC17.44■□□□□ 0.38
RHBDD3Q9Y3P4 KLC2-204ENST00000394067 2898 ntAPPRIS P1 TSL 1 (best) BASIC17.44■□□□□ 0.38
RHBDD3Q9Y3P4 ST7-OT4-201ENST00000397750 1576 ntTSL 1 (best) BASIC17.44■□□□□ 0.38
RHBDD3Q9Y3P4 ARNTL2-204ENST00000395901 1954 ntAPPRIS ALT2 TSL 1 (best) BASIC17.44■□□□□ 0.38
RHBDD3Q9Y3P4 NETO1-207ENST00000583169 2357 ntAPPRIS P1 TSL 1 (best) BASIC17.44■□□□□ 0.38
RHBDD3Q9Y3P4 SHANK3-203ENST00000445220 5175 ntAPPRIS ALT2 TSL 5 BASIC17.44■□□□□ 0.38
RHBDD3Q9Y3P4 AMZ1-202ENST00000407112 1862 ntTSL 2 BASIC17.44■□□□□ 0.38
RHBDD3Q9Y3P4 MTUS2-202ENST00000380808 1793 ntAPPRIS P3 TSL 1 (best) BASIC17.43■□□□□ 0.38
RHBDD3Q9Y3P4 ZC3H12D-201ENST00000409806 5791 ntAPPRIS P1 TSL 1 (best) BASIC17.43■□□□□ 0.38
RHBDD3Q9Y3P4 NHLRC1-201ENST00000340650 2248 ntAPPRIS P1 BASIC17.43■□□□□ 0.38
RHBDD3Q9Y3P4 GPR78-201ENST00000382487 1694 ntAPPRIS P1 TSL 1 (best) BASIC17.43■□□□□ 0.38
RHBDD3Q9Y3P4 FSCN2-202ENST00000417245 1665 ntAPPRIS P1 TSL 1 (best) BASIC17.43■□□□□ 0.38
RHBDD3Q9Y3P4 UBE2B-201ENST00000265339 2515 ntAPPRIS P1 TSL 1 (best) BASIC17.43■□□□□ 0.38
RHBDD3Q9Y3P4 TPSAB1-201ENST00000338844 1175 ntAPPRIS P2 TSL 1 (best) BASIC17.43■□□□□ 0.38
RHBDD3Q9Y3P4 TMCO3-201ENST00000375391 2132 ntTSL 1 (best) BASIC17.43■□□□□ 0.38
RHBDD3Q9Y3P4 AC106738.2-202ENST00000558156 533 ntTSL 4 BASIC17.43■□□□□ 0.38
RHBDD3Q9Y3P4 AC007993.2-201ENST00000592842 521 ntTSL 4 BASIC17.43■□□□□ 0.38
RHBDD3Q9Y3P4 ARFRP1-202ENST00000607873 1061 ntTSL 2 BASIC17.43■□□□□ 0.38
RHBDD3Q9Y3P4 SLC25A46-202ENST00000447245 1575 ntTSL 2 BASIC17.43■□□□□ 0.38
Retrieved 100 of 98,524 protein–RNA pairs in 21.6 ms