Protein–RNA interactions for Protein: Q9NZR4

VSX1, Visual system homeobox 1, humanhuman

Predicted RBP Predictions only

Length 365 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VSX1Q9NZR4 MRM1-204ENST00000614766 1857 ntAPPRIS P1 TSL 1 (best) BASIC17.83■□□□□ 0.44
VSX1Q9NZR4 LHX3-202ENST00000371748 2365 ntTSL 1 (best) BASIC17.83■□□□□ 0.44
VSX1Q9NZR4 RBM6-204ENST00000422955 2324 ntTSL 2 BASIC17.83■□□□□ 0.44
VSX1Q9NZR4 MOGS-201ENST00000233616 2895 ntAPPRIS P3 TSL 1 (best) BASIC17.83■□□□□ 0.44
VSX1Q9NZR4 KIF26A-202ENST00000423312 5649 ntAPPRIS P2 TSL 5 BASIC17.83■□□□□ 0.44
VSX1Q9NZR4 WNT7B-204ENST00000410089 2202 ntTSL 5 BASIC17.83■□□□□ 0.44
VSX1Q9NZR4 ACOT2-204ENST00000613168 1553 ntAPPRIS P5 TSL 1 (best) BASIC17.83■□□□□ 0.44
VSX1Q9NZR4 DCBLD2-201ENST00000326840 6122 ntAPPRIS P1 TSL 1 (best) BASIC17.83■□□□□ 0.44
VSX1Q9NZR4 BTBD9-205ENST00000419706 2034 ntTSL 1 (best) BASIC17.82■□□□□ 0.44
VSX1Q9NZR4 CDCA4-201ENST00000336219 2513 ntAPPRIS P1 TSL 1 (best) BASIC17.82■□□□□ 0.44
VSX1Q9NZR4 LRFN4-201ENST00000309602 2431 ntAPPRIS P1 TSL 1 (best) BASIC17.82■□□□□ 0.44
VSX1Q9NZR4 KRT8P17-201ENST00000453110 1448 ntBASIC17.82■□□□□ 0.44
VSX1Q9NZR4 RNF32-208ENST00000432459 1893 ntAPPRIS P1 TSL 1 (best) BASIC17.82■□□□□ 0.44
VSX1Q9NZR4 CYP2A7-202ENST00000301146 2281 ntAPPRIS P1 TSL 1 (best) BASIC17.82■□□□□ 0.44
VSX1Q9NZR4 AC125437.2-201ENST00000625180 2167 ntBASIC17.82■□□□□ 0.44
VSX1Q9NZR4 TSEN15-203ENST00000423085 1743 ntTSL 2 BASIC17.82■□□□□ 0.44
VSX1Q9NZR4 DNAJC27-AS1-204ENST00000428614 780 ntTSL 3 BASIC17.82■□□□□ 0.44
VSX1Q9NZR4 TRIM35-203ENST00000521253 1215 ntTSL 1 (best) BASIC17.82■□□□□ 0.44
VSX1Q9NZR4 DHRS4-207ENST00000559632 1003 ntTSL 1 (best) BASIC17.82■□□□□ 0.44
VSX1Q9NZR4 AC022517.1-201ENST00000592429 346 ntBASIC17.82■□□□□ 0.44
VSX1Q9NZR4 TMEM230-210ENST00000612323 1231 ntTSL 1 (best) BASIC17.82■□□□□ 0.44
VSX1Q9NZR4 AL032819.3-201ENST00000640283 925 ntAPPRIS P1 TSL 5 BASIC17.82■□□□□ 0.44
VSX1Q9NZR4 MYH14-208ENST00000598205 6137 ntAPPRIS P3 TSL 5 BASIC17.82■□□□□ 0.44
VSX1Q9NZR4 PGAM5-203ENST00000498926 2834 ntAPPRIS P1 TSL 2 BASIC17.82■□□□□ 0.44
VSX1Q9NZR4 KLF13-201ENST00000307145 6825 ntAPPRIS P1 TSL 1 (best) BASIC17.82■□□□□ 0.44
VSX1Q9NZR4 AC011511.1-201ENST00000452032 1956 ntAPPRIS P1 TSL 2 BASIC17.82■□□□□ 0.44
VSX1Q9NZR4 MMP11-201ENST00000215743 2291 ntAPPRIS P1 TSL 1 (best) BASIC17.82■□□□□ 0.44
VSX1Q9NZR4 MAN1B1-AS1-201ENST00000596585 1872 ntBASIC17.82■□□□□ 0.44
VSX1Q9NZR4 STX6-204ENST00000542060 4809 ntTSL 2 BASIC17.82■□□□□ 0.44
VSX1Q9NZR4 TMEM189-201ENST00000371650 2222 ntAPPRIS ALT1 TSL 1 (best) BASIC17.82■□□□□ 0.44
VSX1Q9NZR4 ACBD4-202ENST00000376955 1453 ntTSL 2 BASIC17.82■□□□□ 0.44
VSX1Q9NZR4 ACAT1-201ENST00000265838 1761 ntAPPRIS P1 TSL 1 (best) BASIC17.81■□□□□ 0.44
VSX1Q9NZR4 WDR25-201ENST00000335290 2123 ntAPPRIS P1 TSL 1 (best) BASIC17.81■□□□□ 0.44
VSX1Q9NZR4 HSD11B1L-204ENST00000411793 1362 ntTSL 1 (best) BASIC17.81■□□□□ 0.44
VSX1Q9NZR4 CHP2-201ENST00000300113 2382 ntAPPRIS P1 TSL 1 (best) BASIC17.81■□□□□ 0.44
VSX1Q9NZR4 FBLN1-204ENST00000402984 2355 ntTSL 5 BASIC17.81■□□□□ 0.44
VSX1Q9NZR4 ACY1-215ENST00000636358 1684 ntAPPRIS P1 TSL 1 (best) BASIC17.81■□□□□ 0.44
VSX1Q9NZR4 ARNTL2-204ENST00000395901 1954 ntAPPRIS ALT2 TSL 1 (best) BASIC17.81■□□□□ 0.44
VSX1Q9NZR4 ILF3-217ENST00000589998 2622 ntTSL 2 BASIC17.81■□□□□ 0.44
VSX1Q9NZR4 GRM5-202ENST00000305447 4571 ntAPPRIS ALT2 TSL 1 (best) BASIC17.81■□□□□ 0.44
VSX1Q9NZR4 KIAA1324L-208ENST00000450689 6841 ntAPPRIS ALT2 TSL 5 BASIC17.81■□□□□ 0.44
VSX1Q9NZR4 OIP5-201ENST00000220514 1236 ntAPPRIS P1 TSL 1 (best) BASIC17.81■□□□□ 0.44
VSX1Q9NZR4 HTT-AS-201ENST00000503893 515 ntTSL 4 BASIC17.81■□□□□ 0.44
VSX1Q9NZR4 PTGIR-205ENST00000597185 775 ntTSL 3 BASIC17.81■□□□□ 0.44
VSX1Q9NZR4 JOSD2-205ENST00000601423 802 ntAPPRIS P1 TSL 1 (best) BASIC17.81■□□□□ 0.44
VSX1Q9NZR4 PARD6A-203ENST00000602551 1171 ntTSL 5 BASIC17.81■□□□□ 0.44
VSX1Q9NZR4 DMWD-202ENST00000377735 3292 ntAPPRIS ALT2 TSL 5 BASIC17.81■□□□□ 0.44
VSX1Q9NZR4 SUSD1-202ENST00000374263 2973 ntAPPRIS ALT2 TSL 2 BASIC17.81■□□□□ 0.44
VSX1Q9NZR4 ESX1-201ENST00000372588 1495 ntAPPRIS P1 TSL 1 (best) BASIC17.81■□□□□ 0.44
VSX1Q9NZR4 RAC1-201ENST00000348035 2323 ntAPPRIS P1 TSL 1 (best) BASIC17.81■□□□□ 0.44
VSX1Q9NZR4 ACBD4-204ENST00000431281 2026 ntTSL 5 BASIC17.81■□□□□ 0.44
VSX1Q9NZR4 FGF17-202ENST00000518533 1706 ntTSL 1 (best) BASIC17.81■□□□□ 0.44
VSX1Q9NZR4 FYN-204ENST00000368678 2573 ntAPPRIS ALT1 TSL 5 BASIC17.81■□□□□ 0.44
VSX1Q9NZR4 NEU4-202ENST00000391969 2526 ntAPPRIS P1 TSL 2 BASIC17.8■□□□□ 0.44
VSX1Q9NZR4 TOR2A-201ENST00000336067 1370 ntTSL 2 BASIC17.8■□□□□ 0.44
VSX1Q9NZR4 GRTP1-203ENST00000375431 1384 ntAPPRIS P3 TSL 1 (best) BASIC17.8■□□□□ 0.44
VSX1Q9NZR4 TSR1-201ENST00000301364 5188 ntAPPRIS P1 TSL 1 (best) BASIC17.8■□□□□ 0.44
VSX1Q9NZR4 YTHDF3-213ENST00000621820 2363 ntTSL 2 BASIC17.8■□□□□ 0.44
VSX1Q9NZR4 ETHE1-201ENST00000292147 963 ntAPPRIS P1 TSL 1 (best) BASIC17.8■□□□□ 0.44
VSX1Q9NZR4 UNC50-201ENST00000357765 1143 ntAPPRIS P1 TSL 1 (best) BASIC17.8■□□□□ 0.44
VSX1Q9NZR4 CTNNAL1-202ENST00000374593 761 ntTSL 3 BASIC17.8■□□□□ 0.44
VSX1Q9NZR4 VSX1-201ENST00000376707 943 ntTSL 1 (best) BASIC17.8■□□□□ 0.44
VSX1Q9NZR4 C19orf73-201ENST00000408991 744 ntAPPRIS P1 BASIC17.8■□□□□ 0.44
VSX1Q9NZR4 MELTF-AS1-202ENST00000415244 951 ntTSL 1 (best) BASIC17.8■□□□□ 0.44
VSX1Q9NZR4 HMX1-202ENST00000506970 651 ntTSL 1 (best) BASIC17.8■□□□□ 0.44
VSX1Q9NZR4 PTGER2-202ENST00000557436 643 ntTSL 3 BASIC17.8■□□□□ 0.44
VSX1Q9NZR4 AC024267.6-201ENST00000580603 583 ntTSL 3 BASIC17.8■□□□□ 0.44
VSX1Q9NZR4 ACYP2-207ENST00000606082 713 ntTSL 5 BASIC17.8■□□□□ 0.44
VSX1Q9NZR4 AL031963.3-201ENST00000606441 850 ntBASIC17.8■□□□□ 0.44
VSX1Q9NZR4 MAZ-216ENST00000616501 991 ntTSL 5 BASIC17.8■□□□□ 0.44
VSX1Q9NZR4 CIRBP-246ENST00000628979 1043 ntTSL 2 BASIC17.8■□□□□ 0.44
VSX1Q9NZR4 PQLC2-203ENST00000400548 1548 ntTSL 1 (best) BASIC17.8■□□□□ 0.44
VSX1Q9NZR4 ASMTL-206ENST00000534940 2048 ntTSL 2 BASIC17.8■□□□□ 0.44
VSX1Q9NZR4 UBE2B-201ENST00000265339 2515 ntAPPRIS P1 TSL 1 (best) BASIC17.8■□□□□ 0.44
VSX1Q9NZR4 LRRC4B-201ENST00000389201 2958 ntAPPRIS P1 TSL 2 BASIC17.8■□□□□ 0.44
VSX1Q9NZR4 GABRD-201ENST00000378585 1961 ntAPPRIS P2 TSL 1 (best) BASIC17.8■□□□□ 0.44
VSX1Q9NZR4 TMEM109-202ENST00000536171 1959 ntAPPRIS P1 TSL 2 BASIC17.8■□□□□ 0.44
VSX1Q9NZR4 HSD3B7-202ENST00000297679 2172 ntAPPRIS P1 TSL 1 (best) BASIC17.8■□□□□ 0.44
VSX1Q9NZR4 NKX1-2-201ENST00000451024 3364 ntAPPRIS P1 TSL 5 BASIC17.8■□□□□ 0.44
VSX1Q9NZR4 RNASET2-203ENST00000366855 1417 ntTSL 5 BASIC17.8■□□□□ 0.44
VSX1Q9NZR4 AC010980.2-201ENST00000587099 1412 ntBASIC17.8■□□□□ 0.44
VSX1Q9NZR4 MOK-225ENST00000522867 1883 ntTSL 5 BASIC17.8■□□□□ 0.44
VSX1Q9NZR4 RNF135-205ENST00000535306 2098 ntTSL 1 (best) BASIC17.79■□□□□ 0.44
VSX1Q9NZR4 ASCL4-201ENST00000342331 2260 ntAPPRIS P1 BASIC17.79■□□□□ 0.44
VSX1Q9NZR4 ZIM2-208ENST00000629319 2253 ntAPPRIS P1 TSL 5 BASIC17.79■□□□□ 0.44
VSX1Q9NZR4 SLC25A24P1-201ENST00000411846 1569 ntTSL 5 BASIC17.79■□□□□ 0.44
VSX1Q9NZR4 KLC1-219ENST00000555836 2467 ntTSL 5 BASIC17.79■□□□□ 0.44
VSX1Q9NZR4 MMP23B-202ENST00000378675 1309 ntTSL 1 (best) BASIC17.79■□□□□ 0.44
VSX1Q9NZR4 SUN1-220ENST00000457378 1309 ntTSL 1 (best) BASIC17.79■□□□□ 0.44
VSX1Q9NZR4 HAND2-AS1-237ENST00000616485 2420 ntTSL 2 BASIC17.79■□□□□ 0.44
VSX1Q9NZR4 TNFRSF14-201ENST00000355716 1707 ntAPPRIS P2 TSL 1 (best) BASIC17.79■□□□□ 0.44
VSX1Q9NZR4 TH-206ENST00000381178 1910 ntTSL 1 (best) BASIC17.79■□□□□ 0.44
VSX1Q9NZR4 OGG1-217ENST00000449570 1948 ntTSL 5 BASIC17.79■□□□□ 0.44
VSX1Q9NZR4 IGFALS-201ENST00000215539 2116 ntAPPRIS P1 TSL 1 (best) BASIC17.79■□□□□ 0.44
VSX1Q9NZR4 GRTP1-201ENST00000326039 1294 ntTSL 1 (best) BASIC17.79■□□□□ 0.44
VSX1Q9NZR4 MOB2-201ENST00000329957 1207 ntAPPRIS P1 TSL 2 BASIC17.79■□□□□ 0.44
VSX1Q9NZR4 FAM207A-202ENST00000397826 880 ntAPPRIS ALT1 TSL 1 (best) BASIC17.79■□□□□ 0.44
VSX1Q9NZR4 AL512625.2-201ENST00000417533 625 ntBASIC17.79■□□□□ 0.44
VSX1Q9NZR4 AL355472.2-201ENST00000422958 438 ntBASIC17.79■□□□□ 0.44
VSX1Q9NZR4 AC080023.1-201ENST00000526906 803 ntTSL 2 BASIC17.79■□□□□ 0.44
Retrieved 100 of 98,524 protein–RNA pairs in 47.3 ms