Protein–RNA interactions for Protein: Q9NUL7

DDX28, Probable ATP-dependent RNA helicase DDX28, humanhuman

Known RBP Predictions only

Length 540 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
DDX28Q9NUL7 AC006128.1-201ENST00000624704 1661 ntBASIC18.21■□□□□ 0.51
DDX28Q9NUL7 IDUA-201ENST00000247933 2163 ntAPPRIS P1 TSL 1 (best) BASIC18.21■□□□□ 0.51
DDX28Q9NUL7 KCNC3-203ENST00000477616 3176 ntAPPRIS P2 TSL 1 (best) BASIC18.21■□□□□ 0.51
DDX28Q9NUL7 WDR90-215ENST00000549091 5589 ntAPPRIS ALT2 TSL 5 BASIC18.21■□□□□ 0.51
DDX28Q9NUL7 PMEPA1-202ENST00000341744 4845 ntAPPRIS P1 TSL 1 (best) BASIC18.21■□□□□ 0.51
DDX28Q9NUL7 FEZF1-203ENST00000442488 2099 ntAPPRIS P1 TSL 1 (best) BASIC18.21■□□□□ 0.51
DDX28Q9NUL7 SLC44A3-203ENST00000446120 2094 ntTSL 2 BASIC18.21■□□□□ 0.51
DDX28Q9NUL7 SCOC-207ENST00000506597 1838 ntTSL 1 (best) BASIC18.21■□□□□ 0.51
DDX28Q9NUL7 SPOCK2-209ENST00000536168 1824 ntAPPRIS ALT2 TSL 5 BASIC18.21■□□□□ 0.51
DDX28Q9NUL7 NAGK-229ENST00000613852 1801 ntTSL 1 (best) BASIC18.21■□□□□ 0.51
DDX28Q9NUL7 MYH14-203ENST00000425460 6811 ntAPPRIS P3 TSL 5 BASIC18.2■□□□□ 0.5
DDX28Q9NUL7 EFR3A-201ENST00000254624 5438 ntAPPRIS P1 TSL 1 (best) BASIC18.2■□□□□ 0.5
DDX28Q9NUL7 RAB11FIP2-201ENST00000355624 6061 ntAPPRIS P1 TSL 1 (best) BASIC18.2■□□□□ 0.5
DDX28Q9NUL7 ADCY3-201ENST00000260600 5050 ntAPPRIS P3 TSL 1 (best) BASIC18.2■□□□□ 0.5
DDX28Q9NUL7 DHX33-201ENST00000225296 5618 ntAPPRIS P1 TSL 1 (best) BASIC18.2■□□□□ 0.5
DDX28Q9NUL7 ATPIF1-202ENST00000465645 1855 ntTSL 1 (best) BASIC18.2■□□□□ 0.5
DDX28Q9NUL7 GATA2-202ENST00000430265 2525 ntTSL 1 (best) BASIC18.2■□□□□ 0.5
DDX28Q9NUL7 ZNF354C-201ENST00000315475 5411 ntAPPRIS P1 TSL 1 (best) BASIC18.2■□□□□ 0.5
DDX28Q9NUL7 C2CD2L-201ENST00000336702 4771 ntAPPRIS P1 TSL 1 (best) BASIC18.2■□□□□ 0.5
DDX28Q9NUL7 CERKL-204ENST00000374970 1392 ntTSL 1 (best) BASIC18.2■□□□□ 0.5
DDX28Q9NUL7 LAYN-204ENST00000525126 1763 ntTSL 5 BASIC18.2■□□□□ 0.5
DDX28Q9NUL7 OGG1-202ENST00000302008 2191 ntAPPRIS ALT2 TSL 5 BASIC18.2■□□□□ 0.5
DDX28Q9NUL7 MFSD10-201ENST00000329687 2173 ntAPPRIS P1 TSL 1 (best) BASIC18.2■□□□□ 0.5
DDX28Q9NUL7 FAM239A-202ENST00000438107 2155 ntTSL 5 BASIC18.2■□□□□ 0.5
DDX28Q9NUL7 CXADR-201ENST00000284878 6254 ntAPPRIS P3 TSL 1 (best) BASIC18.2■□□□□ 0.5
DDX28Q9NUL7 ALDH5A1-202ENST00000357578 5248 ntAPPRIS ALT2 TSL 1 (best) BASIC18.2■□□□□ 0.5
DDX28Q9NUL7 SLC16A5-202ENST00000450736 2051 ntAPPRIS P2 TSL 1 (best) BASIC18.2■□□□□ 0.5
DDX28Q9NUL7 NDUFS3-201ENST00000263774 958 ntAPPRIS P1 TSL 1 (best) BASIC18.2■□□□□ 0.5
DDX28Q9NUL7 ASMT-202ENST00000381233 989 ntTSL 1 (best) BASIC18.2■□□□□ 0.5
DDX28Q9NUL7 AC116614.1-201ENST00000456949 539 ntTSL 2 BASIC18.2■□□□□ 0.5
DDX28Q9NUL7 SERP1-208ENST00000491660 830 ntTSL 2 BASIC18.2■□□□□ 0.5
DDX28Q9NUL7 FAXDC2-211ENST00000520968 558 ntTSL 4 BASIC18.2■□□□□ 0.5
DDX28Q9NUL7 AC110285.4-201ENST00000572590 424 ntTSL 3 BASIC18.2■□□□□ 0.5
DDX28Q9NUL7 TERF1P2-201ENST00000583350 1212 ntBASIC18.2■□□□□ 0.5
DDX28Q9NUL7 RAVER2-202ENST00000371072 4362 ntAPPRIS P2 TSL 1 (best) BASIC18.2■□□□□ 0.5
DDX28Q9NUL7 RTN4RL2-201ENST00000335099 2203 ntAPPRIS P1 TSL 1 (best) BASIC18.2■□□□□ 0.5
DDX28Q9NUL7 SUMF2-201ENST00000275607 1894 ntTSL 1 (best) BASIC18.2■□□□□ 0.5
DDX28Q9NUL7 ANTXR2-202ENST00000346652 1343 ntTSL 1 (best) BASIC18.2■□□□□ 0.5
DDX28Q9NUL7 ERF-202ENST00000440177 2032 ntTSL 2 BASIC18.2■□□□□ 0.5
DDX28Q9NUL7 HSPD1-202ENST00000388968 2455 ntAPPRIS P1 TSL 1 (best) BASIC18.2■□□□□ 0.5
DDX28Q9NUL7 TPCN2-201ENST00000294309 2931 ntAPPRIS P1 TSL 1 (best) BASIC18.19■□□□□ 0.5
DDX28Q9NUL7 PTRH1-204ENST00000419060 2692 ntAPPRIS P1 TSL 2 BASIC18.19■□□□□ 0.5
DDX28Q9NUL7 TMEM129-202ENST00000382936 2810 ntAPPRIS P1 TSL 1 (best) BASIC18.19■□□□□ 0.5
DDX28Q9NUL7 EIF4ENIF1-202ENST00000344710 3115 ntTSL 1 (best) BASIC18.19■□□□□ 0.5
DDX28Q9NUL7 STARD10-213ENST00000538536 1678 ntTSL 1 (best) BASIC18.19■□□□□ 0.5
DDX28Q9NUL7 GPAA1-202ENST00000361036 1840 ntTSL 1 (best) BASIC18.19■□□□□ 0.5
DDX28Q9NUL7 EIF6-203ENST00000374450 1289 ntAPPRIS P1 TSL 1 (best) BASIC18.19■□□□□ 0.5
DDX28Q9NUL7 AGAP1-IT1-201ENST00000440498 664 ntTSL 3 BASIC18.19■□□□□ 0.5
DDX28Q9NUL7 AP002748.1-201ENST00000504911 580 ntTSL 3 BASIC18.19■□□□□ 0.5
DDX28Q9NUL7 ADAM9-203ENST00000466936 2053 ntTSL 2 BASIC18.19■□□□□ 0.5
DDX28Q9NUL7 ZNF800-208ENST00000619291 2099 ntTSL 5 BASIC18.19■□□□□ 0.5
DDX28Q9NUL7 KCNT1-202ENST00000371757 4717 ntAPPRIS P3 TSL 1 (best) BASIC18.19■□□□□ 0.5
DDX28Q9NUL7 C10orf95-201ENST00000625129 1469 ntAPPRIS P1 TSL 1 (best) BASIC18.19■□□□□ 0.5
DDX28Q9NUL7 ISLR2-201ENST00000361742 4817 ntAPPRIS P1 TSL 1 (best) BASIC18.19■□□□□ 0.5
DDX28Q9NUL7 RAB4A-205ENST00000618010 2799 ntTSL 3 BASIC18.19■□□□□ 0.5
DDX28Q9NUL7 ME2-216ENST00000639850 2331 ntTSL 5 BASIC18.18■□□□□ 0.5
DDX28Q9NUL7 SCARB2-219ENST00000639738 1517 ntTSL 5 BASIC18.18■□□□□ 0.5
DDX28Q9NUL7 EVX1-202ENST00000496902 2955 ntAPPRIS P1 TSL 1 (best) BASIC18.18■□□□□ 0.5
DDX28Q9NUL7 SHROOM1-202ENST00000378676 2352 ntAPPRIS ALT2 TSL 5 BASIC18.18■□□□□ 0.5
DDX28Q9NUL7 AC121338.2-201ENST00000622535 1744 ntBASIC18.18■□□□□ 0.5
DDX28Q9NUL7 SPHK1-203ENST00000545180 2238 ntAPPRIS P3 TSL 2 BASIC18.18■□□□□ 0.5
DDX28Q9NUL7 CA7-201ENST00000338437 1555 ntAPPRIS P1 TSL 1 (best) BASIC18.18■□□□□ 0.5
DDX28Q9NUL7 AC132008.2-203ENST00000418868 1552 ntTSL 1 (best) BASIC18.18■□□□□ 0.5
DDX28Q9NUL7 UVSSA-207ENST00000511216 2927 ntAPPRIS P2 TSL 1 (best) BASIC18.18■□□□□ 0.5
DDX28Q9NUL7 HACE1-202ENST00000369125 3102 ntTSL 2 BASIC18.18■□□□□ 0.5
DDX28Q9NUL7 SMCO4-201ENST00000298966 1104 ntAPPRIS P1 TSL 1 (best) BASIC18.18■□□□□ 0.5
DDX28Q9NUL7 ACYP2-201ENST00000303536 789 ntTSL 2 BASIC18.18■□□□□ 0.5
DDX28Q9NUL7 RNF208-202ENST00000392827 1135 ntAPPRIS P1 TSL 5 BASIC18.18■□□□□ 0.5
DDX28Q9NUL7 AC010141.2-201ENST00000452426 721 ntBASIC18.18■□□□□ 0.5
DDX28Q9NUL7 C1QTNF5-203ENST00000530681 1046 ntAPPRIS P1 TSL 1 (best) BASIC18.18■□□□□ 0.5
DDX28Q9NUL7 AC008105.3-201ENST00000586376 844 ntTSL 3 BASIC18.18■□□□□ 0.5
DDX28Q9NUL7 SYT15-202ENST00000374323 6428 ntTSL 2 BASIC18.18■□□□□ 0.5
DDX28Q9NUL7 NDOR1-203ENST00000427047 2315 ntTSL 2 BASIC18.18■□□□□ 0.5
DDX28Q9NUL7 DTX3-201ENST00000337737 2029 ntAPPRIS P3 TSL 2 BASIC18.18■□□□□ 0.5
DDX28Q9NUL7 TMEM204-201ENST00000253934 1686 ntAPPRIS P1 TSL 1 (best) BASIC18.18■□□□□ 0.5
DDX28Q9NUL7 DGKI-202ENST00000424189 4163 ntAPPRIS ALT2 TSL 5 BASIC18.18■□□□□ 0.5
DDX28Q9NUL7 ANKRD17-211ENST00000639793 3486 ntTSL 5 BASIC18.18■□□□□ 0.5
DDX28Q9NUL7 NLE1-203ENST00000586869 5286 ntTSL 1 (best) BASIC18.18■□□□□ 0.5
DDX28Q9NUL7 DCAF4-201ENST00000353777 1940 ntTSL 1 (best) BASIC18.17■□□□□ 0.5
DDX28Q9NUL7 EFCAB14-201ENST00000371933 5767 ntAPPRIS P1 TSL 1 (best) BASIC18.17■□□□□ 0.5
DDX28Q9NUL7 WWP1-202ENST00000517970 4686 ntAPPRIS P1 TSL 1 (best) BASIC18.17■□□□□ 0.5
DDX28Q9NUL7 TSPAN4-206ENST00000397408 1430 ntAPPRIS P1 TSL 2 BASIC18.17■□□□□ 0.5
DDX28Q9NUL7 KRT16P2-201ENST00000414673 1423 ntBASIC18.17■□□□□ 0.5
DDX28Q9NUL7 PACSIN3-201ENST00000298838 1843 ntAPPRIS P1 TSL 1 (best) BASIC18.17■□□□□ 0.5
DDX28Q9NUL7 GPR35-202ENST00000403859 2032 ntAPPRIS P3 TSL 2 BASIC18.17■□□□□ 0.5
DDX28Q9NUL7 CXCL16-201ENST00000293778 2222 ntAPPRIS P2 TSL 1 (best) BASIC18.17■□□□□ 0.5
DDX28Q9NUL7 SSC4D-201ENST00000275560 2801 ntAPPRIS P1 TSL 1 (best) BASIC18.17■□□□□ 0.5
DDX28Q9NUL7 DTYMK-201ENST00000305784 1232 ntAPPRIS P1 TSL 1 (best) BASIC18.17■□□□□ 0.5
DDX28Q9NUL7 CYB5R4-201ENST00000369679 768 ntTSL 3 BASIC18.17■□□□□ 0.5
DDX28Q9NUL7 BCKDHB-203ENST00000369760 743 ntTSL 3 BASIC18.17■□□□□ 0.5
DDX28Q9NUL7 MRPL14-201ENST00000372014 959 ntAPPRIS P1 TSL 1 (best) BASIC18.17■□□□□ 0.5
DDX28Q9NUL7 CEP104-201ENST00000378223 1121 ntTSL 1 (best) BASIC18.17■□□□□ 0.5
DDX28Q9NUL7 NRL-201ENST00000396995 810 ntTSL 1 (best) BASIC18.17■□□□□ 0.5
DDX28Q9NUL7 IGFALS-203ENST00000568221 730 ntTSL 4 BASIC18.17■□□□□ 0.5
DDX28Q9NUL7 AC004528.2-201ENST00000610701 440 ntTSL 5 BASIC18.17■□□□□ 0.5
DDX28Q9NUL7 TUSC3-203ENST00000503731 1498 ntAPPRIS P4 TSL 1 (best) BASIC18.17■□□□□ 0.5
DDX28Q9NUL7 EXOC3-AS1-202ENST00000623673 1663 ntBASIC18.17■□□□□ 0.5
DDX28Q9NUL7 PKD1P1-201ENST00000458669 6805 ntBASIC18.17■□□□□ 0.5
DDX28Q9NUL7 LYN-202ENST00000519728 2297 ntAPPRIS P3 TSL 1 (best) BASIC18.17■□□□□ 0.5
DDX28Q9NUL7 LSR-214ENST00000621372 2274 ntAPPRIS P4 TSL 1 (best) BASIC18.17■□□□□ 0.5
Retrieved 100 of 98,524 protein–RNA pairs in 34 ms