Protein–RNA interactions for Protein: Q9BZI7

UPF3B, Regulator of nonsense transcripts 3B, humanhuman

Known RBP Predictions only

Length 483 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
UPF3BQ9BZI7 ZNF324B-202ENST00000545523 2368 ntAPPRIS P1 TSL 1 (best) BASIC23.82■■□□□ 1.4
UPF3BQ9BZI7 CRTC1-203ENST00000594658 2384 ntTSL 1 (best) BASIC23.82■■□□□ 1.4
UPF3BQ9BZI7 ITPKB-202ENST00000366784 3146 ntTSL 1 (best) BASIC23.82■■□□□ 1.4
UPF3BQ9BZI7 DVL3-203ENST00000431765 2294 ntTSL 5 BASIC23.82■■□□□ 1.4
UPF3BQ9BZI7 CYP21A2-222ENST00000435122 1914 ntTSL 2 BASIC23.82■■□□□ 1.4
UPF3BQ9BZI7 OGG1-217ENST00000449570 1948 ntTSL 5 BASIC23.82■■□□□ 1.4
UPF3BQ9BZI7 ADAP1-216ENST00000539900 2178 ntTSL 2 BASIC23.82■■□□□ 1.4
UPF3BQ9BZI7 GPR35-201ENST00000319838 2249 ntAPPRIS P3 TSL 2 BASIC23.82■■□□□ 1.4
UPF3BQ9BZI7 CPEB1-214ENST00000617522 2220 ntTSL 5 BASIC23.82■■□□□ 1.4
UPF3BQ9BZI7 HUNK-201ENST00000270112 7385 ntAPPRIS P1 TSL 1 (best) BASIC23.81■■□□□ 1.4
UPF3BQ9BZI7 EPS8L1-203ENST00000540810 2360 ntTSL 2 BASIC23.81■■□□□ 1.4
UPF3BQ9BZI7 MAP4K4-210ENST00000425019 4403 ntTSL 5 BASIC23.81■■□□□ 1.4
UPF3BQ9BZI7 ACADVL-203ENST00000356839 2323 ntAPPRIS P1 TSL 1 (best) BASIC23.81■■□□□ 1.4
UPF3BQ9BZI7 CLIP3-206ENST00000593074 2080 ntAPPRIS P1 TSL 2 BASIC23.81■■□□□ 1.4
UPF3BQ9BZI7 FTCDNL1-202ENST00000420128 1021 ntTSL 5 BASIC23.81■■□□□ 1.4
UPF3BQ9BZI7 TMEM41B-205ENST00000533723 723 ntTSL 2 BASIC23.81■■□□□ 1.4
UPF3BQ9BZI7 AC069236.1-201ENST00000604339 616 ntBASIC23.81■■□□□ 1.4
UPF3BQ9BZI7 VIM-AS1-202ENST00000605833 918 ntTSL 3 BASIC23.81■■□□□ 1.4
UPF3BQ9BZI7 MARK2-202ENST00000361128 3004 ntAPPRIS ALT2 TSL 1 (best) BASIC23.81■■□□□ 1.4
UPF3BQ9BZI7 KIAA1456-201ENST00000400069 1982 ntTSL 2 BASIC23.81■■□□□ 1.4
UPF3BQ9BZI7 SLC25A24P1-201ENST00000411846 1569 ntTSL 5 BASIC23.81■■□□□ 1.4
UPF3BQ9BZI7 EGFR-204ENST00000420316 1570 ntTSL 1 (best) BASIC23.81■■□□□ 1.4
UPF3BQ9BZI7 TRMU-201ENST00000290846 1940 ntAPPRIS P1 TSL 1 (best) BASIC23.8■■□□□ 1.4
UPF3BQ9BZI7 RALGPS1-204ENST00000373436 1667 ntTSL 1 (best) BASIC23.8■■□□□ 1.4
UPF3BQ9BZI7 FAM76A-205ENST00000419687 1661 ntTSL 2 BASIC23.8■■□□□ 1.4
UPF3BQ9BZI7 ZNF664-207ENST00000539644 5108 ntAPPRIS P1 TSL 1 (best) BASIC23.8■■□□□ 1.4
UPF3BQ9BZI7 BRSK1-201ENST00000309383 3079 ntAPPRIS P1 TSL 1 (best) BASIC23.8■■□□□ 1.4
UPF3BQ9BZI7 TNFSF11-203ENST00000398795 2199 ntAPPRIS P1 TSL 1 (best) BASIC23.8■■□□□ 1.4
UPF3BQ9BZI7 HTT-AS-201ENST00000503893 515 ntTSL 4 BASIC23.8■■□□□ 1.4
UPF3BQ9BZI7 ASPSCR1-211ENST00000581647 720 ntTSL 2 BASIC23.8■■□□□ 1.4
UPF3BQ9BZI7 RAD23A-203ENST00000586534 1746 ntAPPRIS P3 TSL 1 (best) BASIC23.8■■□□□ 1.4
UPF3BQ9BZI7 RPS15-206ENST00000589656 473 ntAPPRIS ALT1 TSL 5 BASIC23.8■■□□□ 1.4
UPF3BQ9BZI7 MAN1B1-AS1-201ENST00000596585 1872 ntBASIC23.8■■□□□ 1.4
UPF3BQ9BZI7 AC011511.1-201ENST00000452032 1956 ntAPPRIS P1 TSL 2 BASIC23.8■■□□□ 1.4
UPF3BQ9BZI7 CD37-204ENST00000535669 1674 ntTSL 2 BASIC23.79■■□□□ 1.4
UPF3BQ9BZI7 RWDD4-206ENST00000512740 1393 ntTSL 5 BASIC23.79■■□□□ 1.4
UPF3BQ9BZI7 KRT16P3-203ENST00000580621 1939 ntTSL 1 (best) BASIC23.79■■□□□ 1.4
UPF3BQ9BZI7 VSX1-201ENST00000376707 943 ntTSL 1 (best) BASIC23.79■■□□□ 1.4
UPF3BQ9BZI7 BET1L-204ENST00000410108 637 ntTSL 3 BASIC23.79■■□□□ 1.4
UPF3BQ9BZI7 UBE2F-205ENST00000414443 2100 ntTSL 2 BASIC23.79■■□□□ 1.4
UPF3BQ9BZI7 VSX1-206ENST00000444511 1197 ntTSL 1 (best) BASIC23.79■■□□□ 1.4
UPF3BQ9BZI7 LRRC1-202ENST00000370888 3180 ntAPPRIS P1 TSL 1 (best) BASIC23.79■■□□□ 1.4
UPF3BQ9BZI7 MTURN-201ENST00000324453 5937 ntAPPRIS P1 TSL 1 (best) BASIC23.79■■□□□ 1.4
UPF3BQ9BZI7 MAP3K21-203ENST00000366624 5809 ntAPPRIS P2 TSL 1 (best) BASIC23.79■■□□□ 1.4
UPF3BQ9BZI7 B4GALT2-201ENST00000309519 2004 ntTSL 2 BASIC23.79■■□□□ 1.4
UPF3BQ9BZI7 MARC2-201ENST00000359316 1335 ntTSL 1 (best) BASIC23.79■■□□□ 1.4
UPF3BQ9BZI7 CD58-203ENST00000457047 1328 ntAPPRIS ALT2 TSL 1 (best) BASIC23.79■■□□□ 1.4
UPF3BQ9BZI7 CEP78-202ENST00000376597 2618 ntAPPRIS P4 TSL 1 (best) BASIC23.79■■□□□ 1.4
UPF3BQ9BZI7 STIM2-211ENST00000639195 2265 ntAPPRIS ALT2 TSL 1 (best) BASIC23.79■■□□□ 1.4
UPF3BQ9BZI7 AC116562.4-201ENST00000641316 2276 ntBASIC23.79■■□□□ 1.4
UPF3BQ9BZI7 KRT19-201ENST00000361566 1390 ntAPPRIS P1 TSL 1 (best) BASIC23.78■■□□□ 1.4
UPF3BQ9BZI7 KLHL31-202ENST00000407079 1905 ntAPPRIS P1 TSL 1 (best) BASIC23.78■■□□□ 1.4
UPF3BQ9BZI7 SETD6-201ENST00000219315 1553 ntAPPRIS ALT2 TSL 1 (best) BASIC23.78■■□□□ 1.4
UPF3BQ9BZI7 FOXN3-209ENST00000555353 1595 ntAPPRIS P3 TSL 1 (best) BASIC23.78■■□□□ 1.4
UPF3BQ9BZI7 FFAR3-201ENST00000327809 1796 ntAPPRIS P1 TSL 1 (best) BASIC23.78■■□□□ 1.4
UPF3BQ9BZI7 PCID2-203ENST00000375457 2372 ntTSL 1 (best) BASIC23.78■■□□□ 1.4
UPF3BQ9BZI7 SSH1-209ENST00000551165 2354 ntAPPRIS ALT2 TSL 1 (best) BASIC23.78■■□□□ 1.4
UPF3BQ9BZI7 AC010980.2-201ENST00000587099 1412 ntBASIC23.78■■□□□ 1.4
UPF3BQ9BZI7 BCR-202ENST00000359540 4708 ntTSL 1 (best) BASIC23.78■■□□□ 1.4
UPF3BQ9BZI7 SMURF1-202ENST00000361368 5581 ntAPPRIS P1 TSL 1 (best) BASIC23.78■■□□□ 1.4
UPF3BQ9BZI7 FUZ-212ENST00000528094 1479 ntTSL 2 BASIC23.78■■□□□ 1.4
UPF3BQ9BZI7 BAZ1B-202ENST00000404251 5428 ntAPPRIS P1 TSL 2 BASIC23.78■■□□□ 1.4
UPF3BQ9BZI7 TMEM109-202ENST00000536171 1959 ntAPPRIS P1 TSL 2 BASIC23.78■■□□□ 1.4
UPF3BQ9BZI7 ACBD4-204ENST00000431281 2026 ntTSL 5 BASIC23.77■■□□□ 1.4
UPF3BQ9BZI7 MGAT5B-201ENST00000301618 4486 ntAPPRIS P3 TSL 5 BASIC23.77■■□□□ 1.4
UPF3BQ9BZI7 RNF32-208ENST00000432459 1893 ntAPPRIS P1 TSL 1 (best) BASIC23.77■■□□□ 1.4
UPF3BQ9BZI7 ETHE1-201ENST00000292147 963 ntAPPRIS P1 TSL 1 (best) BASIC23.77■■□□□ 1.4
UPF3BQ9BZI7 GRTP1-201ENST00000326039 1294 ntTSL 1 (best) BASIC23.77■■□□□ 1.4
UPF3BQ9BZI7 FGF12-AS2-201ENST00000443165 580 ntTSL 4 BASIC23.77■■□□□ 1.4
UPF3BQ9BZI7 ACYP2-207ENST00000606082 713 ntTSL 5 BASIC23.77■■□□□ 1.4
UPF3BQ9BZI7 AC008694.1-202ENST00000636953 945 ntBASIC23.77■■□□□ 1.4
UPF3BQ9BZI7 AL032819.3-201ENST00000640283 925 ntAPPRIS P1 TSL 5 BASIC23.77■■□□□ 1.4
UPF3BQ9BZI7 FNDC5-207ENST00000640867 639 ntAPPRIS P2 TSL 2 BASIC23.77■■□□□ 1.4
UPF3BQ9BZI7 KRT17P1-201ENST00000399211 1546 ntBASIC23.77■■□□□ 1.4
UPF3BQ9BZI7 RAB34-204ENST00000395245 1766 ntAPPRIS P1 TSL 1 (best) BASIC23.77■■□□□ 1.4
UPF3BQ9BZI7 FAM213B-204ENST00000419916 2749 ntAPPRIS P3 TSL 1 (best) BASIC23.77■■□□□ 1.4
UPF3BQ9BZI7 SPAG16-204ENST00000413312 2258 ntTSL 5 BASIC23.77■■□□□ 1.4
UPF3BQ9BZI7 SAXO1-202ENST00000380534 2099 ntAPPRIS P3 TSL 1 (best) BASIC23.77■■□□□ 1.4
UPF3BQ9BZI7 TMEM179-206ENST00000616017 1645 ntBASIC23.77■■□□□ 1.4
UPF3BQ9BZI7 MFSD1-219ENST00000622669 2361 ntTSL 1 (best) BASIC23.77■■□□□ 1.4
UPF3BQ9BZI7 MARK2-208ENST00000508192 2924 ntAPPRIS P3 TSL 5 BASIC23.77■■□□□ 1.39
UPF3BQ9BZI7 USP25-202ENST00000285681 5216 ntTSL 1 (best) BASIC23.77■■□□□ 1.39
UPF3BQ9BZI7 TINAGL1-201ENST00000271064 2187 ntAPPRIS P3 TSL 1 (best) BASIC23.76■■□□□ 1.39
UPF3BQ9BZI7 GPRC5C-204ENST00000392629 1419 ntAPPRIS ALT2 TSL 1 (best) BASIC23.76■■□□□ 1.39
UPF3BQ9BZI7 ESYT2-201ENST00000251527 5960 ntAPPRIS P2 TSL 1 (best) BASIC23.76■■□□□ 1.39
UPF3BQ9BZI7 NEU4-201ENST00000325935 2288 ntTSL 1 (best) BASIC23.76■■□□□ 1.39
UPF3BQ9BZI7 WFIKKN1-201ENST00000319070 2028 ntAPPRIS P1 TSL 1 (best) BASIC23.76■■□□□ 1.39
UPF3BQ9BZI7 AGPAT5-201ENST00000285518 3685 ntAPPRIS P1 TSL 1 (best) BASIC23.76■■□□□ 1.39
UPF3BQ9BZI7 PRTN3-201ENST00000234347 1026 ntAPPRIS P1 TSL 1 (best) BASIC23.76■■□□□ 1.39
UPF3BQ9BZI7 GGTLC1-201ENST00000278765 974 ntAPPRIS P1 TSL 1 (best) BASIC23.76■■□□□ 1.39
UPF3BQ9BZI7 MOB2-201ENST00000329957 1207 ntAPPRIS P1 TSL 2 BASIC23.76■■□□□ 1.39
UPF3BQ9BZI7 PLAC9-202ENST00000372267 472 ntAPPRIS ALT2 TSL 3 BASIC23.76■■□□□ 1.39
UPF3BQ9BZI7 LINC01117-201ENST00000443670 699 ntTSL 5 BASIC23.76■■□□□ 1.39
UPF3BQ9BZI7 TK2-208ENST00000545043 1120 ntTSL 2 BASIC23.76■■□□□ 1.39
UPF3BQ9BZI7 LIMD2-202ENST00000578061 756 ntAPPRIS P1 TSL 2 BASIC23.76■■□□□ 1.39
UPF3BQ9BZI7 NDUFA6-AS1-207ENST00000595777 833 ntTSL 5 BASIC23.76■■□□□ 1.39
UPF3BQ9BZI7 MFSD14C-203ENST00000602917 786 ntAPPRIS P5 TSL 1 (best) BASIC23.76■■□□□ 1.39
UPF3BQ9BZI7 AC005181.1-201ENST00000604782 1256 ntBASIC23.76■■□□□ 1.39
UPF3BQ9BZI7 MMP23B-202ENST00000378675 1309 ntTSL 1 (best) BASIC23.76■■□□□ 1.39
UPF3BQ9BZI7 AMDHD1-201ENST00000266736 2260 ntAPPRIS P1 TSL 1 (best) BASIC23.76■■□□□ 1.39
Retrieved 100 of 98,524 protein–RNA pairs in 35.2 ms