Protein–RNA interactions for Protein: Q96NR3

PTCHD1, Patched domain-containing protein 1, humanhuman

Predictions only

Length 888 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PTCHD1Q96NR3 PRMT5-201ENST00000216350 2271 ntTSL 2 BASIC18.84■□□□□ 0.61
PTCHD1Q96NR3 ADM-206ENST00000528655 1889 ntAPPRIS P1 TSL 1 (best) BASIC18.84■□□□□ 0.61
PTCHD1Q96NR3 FGFR1-238ENST00000532791 5590 ntAPPRIS ALT1 TSL 5 BASIC18.84■□□□□ 0.61
PTCHD1Q96NR3 WASH6P-203ENST00000460206 1826 ntTSL 5 BASIC18.84■□□□□ 0.61
PTCHD1Q96NR3 SORCS2-203ENST00000507866 6152 ntAPPRIS P2 TSL 1 (best) BASIC18.83■□□□□ 0.61
PTCHD1Q96NR3 CACNA2D1-203ENST00000423588 1429 ntTSL 1 (best) BASIC18.83■□□□□ 0.61
PTCHD1Q96NR3 SPOCK3-217ENST00000511269 1768 ntAPPRIS P3 TSL 2 BASIC18.83■□□□□ 0.61
PTCHD1Q96NR3 SP3-208ENST00000640958 2142 ntAPPRIS ALT2 TSL 1 (best) BASIC18.83■□□□□ 0.61
PTCHD1Q96NR3 NPAS3-210ENST00000551492 2817 ntAPPRIS ALT2 TSL 5 BASIC18.83■□□□□ 0.61
PTCHD1Q96NR3 DUSP15-201ENST00000278979 1732 ntTSL 2 BASIC18.83■□□□□ 0.61
PTCHD1Q96NR3 IKZF1-209ENST00000438033 1748 ntTSL 2 BASIC18.83■□□□□ 0.61
PTCHD1Q96NR3 GPS2-201ENST00000380728 1379 ntAPPRIS P1 TSL 1 (best) BASIC18.83■□□□□ 0.61
PTCHD1Q96NR3 ARSE-205ENST00000540563 1990 ntTSL 2 BASIC18.83■□□□□ 0.61
PTCHD1Q96NR3 PTBP1P-201ENST00000554374 1601 ntBASIC18.83■□□□□ 0.61
PTCHD1Q96NR3 AC020907.5-201ENST00000624372 1936 ntBASIC18.83■□□□□ 0.6
PTCHD1Q96NR3 GGTLC1-203ENST00000335694 1046 ntAPPRIS P1 TSL 1 (best) BASIC18.83■□□□□ 0.6
PTCHD1Q96NR3 CEACAM3-201ENST00000344550 1022 ntAPPRIS ALT2 TSL 1 (best) BASIC18.83■□□□□ 0.6
PTCHD1Q96NR3 CHCHD10-201ENST00000401675 691 ntAPPRIS P1 TSL 5 BASIC18.83■□□□□ 0.6
PTCHD1Q96NR3 ADM-205ENST00000528544 586 ntTSL 2 BASIC18.83■□□□□ 0.6
PTCHD1Q96NR3 AC105020.4-201ENST00000569467 563 ntTSL 4 BASIC18.83■□□□□ 0.6
PTCHD1Q96NR3 AC006058.3-201ENST00000606217 1069 ntBASIC18.83■□□□□ 0.6
PTCHD1Q96NR3 SPATS2L-204ENST00000409140 2463 ntAPPRIS P1 TSL 2 BASIC18.83■□□□□ 0.6
PTCHD1Q96NR3 NUDT11-201ENST00000375992 2385 ntAPPRIS P1 TSL 1 (best) BASIC18.83■□□□□ 0.6
PTCHD1Q96NR3 SPEG-203ENST00000396688 1457 ntTSL 3 BASIC18.83■□□□□ 0.6
PTCHD1Q96NR3 EPN2-212ENST00000575595 1491 ntTSL 2 BASIC18.83■□□□□ 0.6
PTCHD1Q96NR3 KREMEN2-201ENST00000303746 2326 ntAPPRIS P4 TSL 1 (best) BASIC18.83■□□□□ 0.6
PTCHD1Q96NR3 ARFRP1-210ENST00000614942 2554 ntTSL 5 BASIC18.83■□□□□ 0.6
PTCHD1Q96NR3 KRT8P20-201ENST00000423953 1409 ntBASIC18.83■□□□□ 0.6
PTCHD1Q96NR3 AP005212.1-201ENST00000581547 1997 ntBASIC18.82■□□□□ 0.6
PTCHD1Q96NR3 HGH1-201ENST00000347708 2531 ntAPPRIS P1 TSL 1 (best) BASIC18.82■□□□□ 0.6
PTCHD1Q96NR3 RIPPLY3-201ENST00000329553 2235 ntAPPRIS P1 TSL 1 (best) BASIC18.82■□□□□ 0.6
PTCHD1Q96NR3 SNUPN-205ENST00000564644 1931 ntAPPRIS P1 TSL 2 BASIC18.82■□□□□ 0.6
PTCHD1Q96NR3 MYO1D-213ENST00000583621 1916 ntTSL 1 (best) BASIC18.82■□□□□ 0.6
PTCHD1Q96NR3 BABAM1-213ENST00000601043 1366 ntAPPRIS P3 TSL 2 BASIC18.82■□□□□ 0.6
PTCHD1Q96NR3 SMG8-203ENST00000578922 2178 ntBASIC18.82■□□□□ 0.6
PTCHD1Q96NR3 MAG-201ENST00000361922 2426 ntAPPRIS ALT2 TSL 1 (best) BASIC18.82■□□□□ 0.6
PTCHD1Q96NR3 CDKN1C-203ENST00000430149 1570 ntAPPRIS P3 TSL 1 (best) BASIC18.82■□□□□ 0.6
PTCHD1Q96NR3 FBXL17-205ENST00000542267 5188 ntAPPRIS P1 TSL 1 (best) BASIC18.82■□□□□ 0.6
PTCHD1Q96NR3 SMIM3-201ENST00000526627 2332 ntAPPRIS P1 TSL 1 (best) BASIC18.82■□□□□ 0.6
PTCHD1Q96NR3 CAVIN3-201ENST00000303927 1174 ntAPPRIS P1 TSL 1 (best) BASIC18.82■□□□□ 0.6
PTCHD1Q96NR3 OGG1-209ENST00000383826 1069 ntTSL 5 BASIC18.82■□□□□ 0.6
PTCHD1Q96NR3 GCC2-AS1-202ENST00000440975 574 ntTSL 4 BASIC18.82■□□□□ 0.6
PTCHD1Q96NR3 CRIP2-202ENST00000483017 1176 ntTSL 2 BASIC18.82■□□□□ 0.6
PTCHD1Q96NR3 CAMLG-202ENST00000514518 895 ntTSL 1 (best) BASIC18.82■□□□□ 0.6
PTCHD1Q96NR3 SCARA5-203ENST00000518030 1074 ntTSL 1 (best) BASIC18.82■□□□□ 0.6
PTCHD1Q96NR3 ZNF688-205ENST00000563707 244 ntTSL 3 BASIC18.82■□□□□ 0.6
PTCHD1Q96NR3 AC008687.6-201ENST00000596318 630 ntBASIC18.82■□□□□ 0.6
PTCHD1Q96NR3 TARDBP-228ENST00000629725 1031 ntTSL 5 BASIC18.82■□□□□ 0.6
PTCHD1Q96NR3 PIP5K1C-201ENST00000335312 5080 ntAPPRIS P3 TSL 1 (best) BASIC18.82■□□□□ 0.6
PTCHD1Q96NR3 TTLL7-214ENST00000610996 2028 ntTSL 5 BASIC18.82■□□□□ 0.6
PTCHD1Q96NR3 POMGNT1-201ENST00000371984 2728 ntAPPRIS P1 TSL 1 (best) BASIC18.82■□□□□ 0.6
PTCHD1Q96NR3 TACO1-201ENST00000258975 1469 ntAPPRIS P1 TSL 1 (best) BASIC18.82■□□□□ 0.6
PTCHD1Q96NR3 TMEM53-205ENST00000372244 1472 ntTSL 2 BASIC18.82■□□□□ 0.6
PTCHD1Q96NR3 KANK3-203ENST00000593649 2672 ntAPPRIS ALT2 TSL 1 (best) BASIC18.82■□□□□ 0.6
PTCHD1Q96NR3 UBR2-203ENST00000372903 2423 ntTSL 1 (best) BASIC18.82■□□□□ 0.6
PTCHD1Q96NR3 GLIPR2-203ENST00000396613 1917 ntTSL 4 BASIC18.82■□□□□ 0.6
PTCHD1Q96NR3 KRT8P17-201ENST00000453110 1448 ntBASIC18.82■□□□□ 0.6
PTCHD1Q96NR3 NFS1-214ENST00000541387 1436 ntTSL 2 BASIC18.82■□□□□ 0.6
PTCHD1Q96NR3 RDX-202ENST00000405097 2761 ntTSL 1 (best) BASIC18.81■□□□□ 0.6
PTCHD1Q96NR3 PLEKHB1-204ENST00000398494 2061 ntAPPRIS ALT1 TSL 1 (best) BASIC18.81■□□□□ 0.6
PTCHD1Q96NR3 SPTBN4-201ENST00000338932 8686 ntAPPRIS ALT1 TSL 5 BASIC18.81■□□□□ 0.6
PTCHD1Q96NR3 SMARCD2-203ENST00000448276 2716 ntAPPRIS P1 TSL 1 (best) BASIC18.81■□□□□ 0.6
PTCHD1Q96NR3 ETV2-202ENST00000379026 1571 ntAPPRIS ALT2 TSL 2 BASIC18.81■□□□□ 0.6
PTCHD1Q96NR3 ARHGDIA-202ENST00000400721 1568 ntTSL 2 BASIC18.81■□□□□ 0.6
PTCHD1Q96NR3 NOS3-204ENST00000467517 2377 ntTSL 1 (best) BASIC18.81■□□□□ 0.6
PTCHD1Q96NR3 PLEKHH3-201ENST00000293349 2987 ntAPPRIS ALT1 TSL 5 BASIC18.81■□□□□ 0.6
PTCHD1Q96NR3 CABP2-202ENST00000353903 789 ntAPPRIS P1 TSL 5 BASIC18.81■□□□□ 0.6
PTCHD1Q96NR3 TRA2B-203ENST00000382191 976 ntTSL 2 BASIC18.81■□□□□ 0.6
PTCHD1Q96NR3 KRT18P29-201ENST00000397031 1267 ntBASIC18.81■□□□□ 0.6
PTCHD1Q96NR3 SERTAD4-AS1-201ENST00000437764 726 ntTSL 1 (best) BASIC18.81■□□□□ 0.6
PTCHD1Q96NR3 ABHD17AP6-201ENST00000458502 1044 ntBASIC18.81■□□□□ 0.6
PTCHD1Q96NR3 AC073912.1-201ENST00000546264 587 ntTSL 3 BASIC18.81■□□□□ 0.6
PTCHD1Q96NR3 SEC23A-AS1-201ENST00000557350 500 ntTSL 3 BASIC18.81■□□□□ 0.6
PTCHD1Q96NR3 COX4I1-202ENST00000561569 716 ntAPPRIS P1 TSL 2 BASIC18.81■□□□□ 0.6
PTCHD1Q96NR3 AL031963.3-201ENST00000606441 850 ntBASIC18.81■□□□□ 0.6
PTCHD1Q96NR3 KCTD13-207ENST00000568000 2528 ntAPPRIS P1 TSL 1 (best) BASIC18.81■□□□□ 0.6
PTCHD1Q96NR3 SLC16A3-201ENST00000392339 2074 ntAPPRIS P1 TSL 5 BASIC18.81■□□□□ 0.6
PTCHD1Q96NR3 SLC16A3-202ENST00000392341 2086 ntAPPRIS P1 TSL 5 BASIC18.81■□□□□ 0.6
PTCHD1Q96NR3 SCAMP3-201ENST00000302631 1446 ntAPPRIS P1 TSL 1 (best) BASIC18.81■□□□□ 0.6
PTCHD1Q96NR3 SLC35A3-205ENST00000465289 5696 ntAPPRIS P1 TSL 5 BASIC18.81■□□□□ 0.6
PTCHD1Q96NR3 FAM129C-203ENST00000449408 2004 ntAPPRIS ALT2 TSL 2 BASIC18.81■□□□□ 0.6
PTCHD1Q96NR3 ME3-202ENST00000393324 2240 ntAPPRIS P1 TSL 1 (best) BASIC18.81■□□□□ 0.6
PTCHD1Q96NR3 SLC17A7-201ENST00000221485 2973 ntAPPRIS P1 TSL 1 (best) BASIC18.81■□□□□ 0.6
PTCHD1Q96NR3 CYP1B1-207ENST00000614273 2174 ntAPPRIS P1 TSL 5 BASIC18.81■□□□□ 0.6
PTCHD1Q96NR3 SLC35A3-222ENST00000640715 1989 ntTSL 5 BASIC18.81■□□□□ 0.6
PTCHD1Q96NR3 SLC46A3-202ENST00000380814 2121 ntAPPRIS ALT1 TSL 1 (best) BASIC18.8■□□□□ 0.6
PTCHD1Q96NR3 RASSF7-204ENST00000431809 1745 ntAPPRIS ALT2 TSL 5 BASIC18.8■□□□□ 0.6
PTCHD1Q96NR3 HSD11B1L-219ENST00000581893 1540 ntTSL 1 (best) BASIC18.8■□□□□ 0.6
PTCHD1Q96NR3 LRRC29-209ENST00000629962 1303 ntAPPRIS P1 TSL 5 BASIC18.8■□□□□ 0.6
PTCHD1Q96NR3 CD247-202ENST00000392122 1678 ntAPPRIS ALT1 TSL 1 (best) BASIC18.8■□□□□ 0.6
PTCHD1Q96NR3 DGKZ-214ENST00000527911 3337 ntAPPRIS ALT2 TSL 1 (best) BASIC18.8■□□□□ 0.6
PTCHD1Q96NR3 FGFR3-210ENST00000613647 4438 ntTSL 5 BASIC18.8■□□□□ 0.6
PTCHD1Q96NR3 NF2-201ENST00000334961 2020 ntTSL 1 (best) BASIC18.8■□□□□ 0.6
PTCHD1Q96NR3 FUBP3-201ENST00000319725 3124 ntAPPRIS P1 TSL 1 (best) BASIC18.8■□□□□ 0.6
PTCHD1Q96NR3 MEDAG-201ENST00000380482 2374 ntAPPRIS P1 TSL 1 (best) BASIC18.8■□□□□ 0.6
PTCHD1Q96NR3 PMAIP1-201ENST00000269518 1262 ntTSL 1 (best) BASIC18.8■□□□□ 0.6
PTCHD1Q96NR3 WDR74-202ENST00000311713 1153 ntTSL 1 (best) BASIC18.8■□□□□ 0.6
PTCHD1Q96NR3 NDUFB1-201ENST00000329559 528 ntTSL 1 (best) BASIC18.8■□□□□ 0.6
PTCHD1Q96NR3 ZDHHC12-202ENST00000372667 1187 ntTSL 5 BASIC18.8■□□□□ 0.6
PTCHD1Q96NR3 C6orf48-205ENST00000375640 1053 ntAPPRIS P1 TSL 1 (best) BASIC18.8■□□□□ 0.6
Retrieved 100 of 98,524 protein–RNA pairs in 25.8 ms