Protein–RNA interactions for Protein: Q96DZ5

CLIP3, CAP-Gly domain-containing linker protein 3, humanhuman

Predictions only

Length 547 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CLIP3Q96DZ5 ARSA-202ENST00000356098 1895 ntAPPRIS P1 TSL 1 (best) BASIC19.22■□□□□ 0.67
CLIP3Q96DZ5 NYAP1-202ENST00000454988 2777 ntTSL 5 BASIC19.21■□□□□ 0.67
CLIP3Q96DZ5 AC010616.1-201ENST00000597630 2078 ntAPPRIS P1 TSL 5 BASIC19.21■□□□□ 0.67
CLIP3Q96DZ5 COL13A1-202ENST00000357811 2991 ntAPPRIS ALT2 TSL 5 BASIC19.21■□□□□ 0.67
CLIP3Q96DZ5 PUF60-203ENST00000453551 1842 ntTSL 1 (best) BASIC19.21■□□□□ 0.67
CLIP3Q96DZ5 ALG1-201ENST00000262374 2132 ntAPPRIS P1 TSL 1 (best) BASIC19.21■□□□□ 0.67
CLIP3Q96DZ5 DCBLD2-201ENST00000326840 6122 ntAPPRIS P1 TSL 1 (best) BASIC19.21■□□□□ 0.67
CLIP3Q96DZ5 GCHFR-201ENST00000260447 777 ntAPPRIS P1 TSL 1 (best) BASIC19.21■□□□□ 0.67
CLIP3Q96DZ5 CAVIN3-201ENST00000303927 1174 ntAPPRIS P1 TSL 1 (best) BASIC19.21■□□□□ 0.67
CLIP3Q96DZ5 RNF5-203ENST00000375094 1168 ntAPPRIS P1 TSL 1 (best) BASIC19.21■□□□□ 0.67
CLIP3Q96DZ5 CLK3-202ENST00000395066 2621 ntTSL 1 (best) BASIC19.21■□□□□ 0.67
CLIP3Q96DZ5 CHCHD10-201ENST00000401675 691 ntAPPRIS P1 TSL 5 BASIC19.21■□□□□ 0.67
CLIP3Q96DZ5 NUDT16L1-202ENST00000405142 2040 ntTSL 1 (best) BASIC19.21■□□□□ 0.67
CLIP3Q96DZ5 DLEU7-203ENST00000504404 1122 ntAPPRIS ALT2 TSL 1 (best) BASIC19.21■□□□□ 0.67
CLIP3Q96DZ5 LINC01301-204ENST00000530725 577 ntTSL 4 BASIC19.21■□□□□ 0.67
CLIP3Q96DZ5 AC005829.2-201ENST00000571422 1056 ntBASIC19.21■□□□□ 0.67
CLIP3Q96DZ5 MTA1-201ENST00000331320 2876 ntTSL 1 (best) BASIC19.21■□□□□ 0.67
CLIP3Q96DZ5 ATP6V0E2-203ENST00000456496 2722 ntTSL 1 (best) BASIC19.21■□□□□ 0.67
CLIP3Q96DZ5 ATP6V0E2-213ENST00000615196 2727 ntTSL 1 (best) BASIC19.21■□□□□ 0.67
CLIP3Q96DZ5 WDR37-203ENST00000381329 1307 ntTSL 1 (best) BASIC19.21■□□□□ 0.67
CLIP3Q96DZ5 TFAP2A-202ENST00000379608 2576 ntAPPRIS ALT1 TSL 1 (best) BASIC19.21■□□□□ 0.67
CLIP3Q96DZ5 NUP160-203ENST00000526870 1537 ntTSL 1 (best) BASIC19.2■□□□□ 0.66
CLIP3Q96DZ5 PPP3CC-201ENST00000240139 2189 ntAPPRIS P3 TSL 1 (best) BASIC19.2■□□□□ 0.66
CLIP3Q96DZ5 OTUB1-209ENST00000538426 1729 ntAPPRIS P2 TSL 1 (best) BASIC19.2■□□□□ 0.66
CLIP3Q96DZ5 RFXANK-201ENST00000303088 1407 ntAPPRIS P1 TSL 1 (best) BASIC19.2■□□□□ 0.66
CLIP3Q96DZ5 ETV7-205ENST00000538992 1434 ntTSL 2 BASIC19.2■□□□□ 0.66
CLIP3Q96DZ5 TTYH3-201ENST00000258796 4840 ntAPPRIS P1 TSL 1 (best) BASIC19.2■□□□□ 0.66
CLIP3Q96DZ5 SOX3-201ENST00000370536 2132 ntAPPRIS P1 BASIC19.2■□□□□ 0.66
CLIP3Q96DZ5 NDUFA8-201ENST00000373768 844 ntAPPRIS P1 TSL 1 (best) BASIC19.2■□□□□ 0.66
CLIP3Q96DZ5 PYCR3-202ENST00000377579 985 ntTSL 2 BASIC19.2■□□□□ 0.66
CLIP3Q96DZ5 NT5C3B-203ENST00000435506 975 ntAPPRIS P1 TSL 5 BASIC19.2■□□□□ 0.66
CLIP3Q96DZ5 UBE2SP1-201ENST00000450587 669 ntBASIC19.2■□□□□ 0.66
CLIP3Q96DZ5 ABHD17AP6-201ENST00000458502 1044 ntBASIC19.2■□□□□ 0.66
CLIP3Q96DZ5 ZNF529-AS1-202ENST00000475219 1033 ntTSL 1 (best) BASIC19.2■□□□□ 0.66
CLIP3Q96DZ5 RPPH1-201ENST00000516869 333 ntBASIC19.2■□□□□ 0.66
CLIP3Q96DZ5 AC233263.1-201ENST00000578059 224 ntBASIC19.2■□□□□ 0.66
CLIP3Q96DZ5 MIR2861-201ENST00000636310 90 ntBASIC19.2■□□□□ 0.66
CLIP3Q96DZ5 ACADVL-202ENST00000350303 2191 ntTSL 1 (best) BASIC19.2■□□□□ 0.66
CLIP3Q96DZ5 POMGNT2-202ENST00000441964 2531 ntAPPRIS P1 TSL 4 BASIC19.2■□□□□ 0.66
CLIP3Q96DZ5 CFAP97-205ENST00000514798 2895 ntTSL 1 (best) BASIC19.2■□□□□ 0.66
CLIP3Q96DZ5 SUMF2-204ENST00000395436 1683 ntAPPRIS ALT2 TSL 1 (best) BASIC19.2■□□□□ 0.66
CLIP3Q96DZ5 NSUN5-204ENST00000438747 1663 ntAPPRIS P4 TSL 1 (best) BASIC19.2■□□□□ 0.66
CLIP3Q96DZ5 DNAAF3-207ENST00000527223 2228 ntAPPRIS ALT2 TSL 2 BASIC19.2■□□□□ 0.66
CLIP3Q96DZ5 MOK-233ENST00000524214 1539 ntTSL 2 BASIC19.2■□□□□ 0.66
CLIP3Q96DZ5 MMP17-201ENST00000360564 2411 ntAPPRIS P2 TSL 1 (best) BASIC19.2■□□□□ 0.66
CLIP3Q96DZ5 TMEM132A-202ENST00000453848 3346 ntAPPRIS ALT2 TSL 1 (best) BASIC19.2■□□□□ 0.66
CLIP3Q96DZ5 GPC5-201ENST00000377067 2957 ntAPPRIS P1 TSL 1 (best) BASIC19.2■□□□□ 0.66
CLIP3Q96DZ5 MCAT-201ENST00000290429 2056 ntAPPRIS P1 TSL 1 (best) BASIC19.2■□□□□ 0.66
CLIP3Q96DZ5 VCPKMT-202ENST00000395860 1761 ntAPPRIS P1 TSL 1 (best) BASIC19.19■□□□□ 0.66
CLIP3Q96DZ5 MAP3K15-201ENST00000338883 4012 ntAPPRIS P1 TSL 5 BASIC19.19■□□□□ 0.66
CLIP3Q96DZ5 DPYSL5-202ENST00000401478 1972 ntAPPRIS P1 TSL 1 (best) BASIC19.19■□□□□ 0.66
CLIP3Q96DZ5 FAM72B-202ENST00000369390 2396 ntAPPRIS P1 TSL 1 (best) BASIC19.19■□□□□ 0.66
CLIP3Q96DZ5 ZNF331-202ENST00000411977 2248 ntAPPRIS P1 TSL 1 (best) BASIC19.19■□□□□ 0.66
CLIP3Q96DZ5 FBL-201ENST00000221801 1160 ntAPPRIS P1 TSL 1 (best) BASIC19.19■□□□□ 0.66
CLIP3Q96DZ5 LRR1-202ENST00000318317 957 ntTSL 1 (best) BASIC19.19■□□□□ 0.66
CLIP3Q96DZ5 CABP2-202ENST00000353903 789 ntAPPRIS P1 TSL 5 BASIC19.19■□□□□ 0.66
CLIP3Q96DZ5 F8A2-201ENST00000369505 1116 ntAPPRIS P1 BASIC19.19■□□□□ 0.66
CLIP3Q96DZ5 LRRC26-201ENST00000371542 1209 ntAPPRIS P1 TSL 1 (best) BASIC19.19■□□□□ 0.66
CLIP3Q96DZ5 AGTRAP-203ENST00000376629 1100 ntAPPRIS ALT2 TSL 1 (best) BASIC19.19■□□□□ 0.66
CLIP3Q96DZ5 RER1-204ENST00000378518 522 ntTSL 3 BASIC19.19■□□□□ 0.66
CLIP3Q96DZ5 NDUFB2-203ENST00000461457 559 ntTSL 3 BASIC19.19■□□□□ 0.66
CLIP3Q96DZ5 CAVIN3-203ENST00000530979 957 ntTSL 2 BASIC19.19■□□□□ 0.66
CLIP3Q96DZ5 SEC23A-AS1-201ENST00000557350 500 ntTSL 3 BASIC19.19■□□□□ 0.66
CLIP3Q96DZ5 RN7SL471P-201ENST00000580476 299 ntBASIC19.19■□□□□ 0.66
CLIP3Q96DZ5 ZNF446-208ENST00000622313 1884 ntTSL 1 (best) BASIC19.19■□□□□ 0.66
CLIP3Q96DZ5 CCDC88B-202ENST00000356786 4915 ntAPPRIS P1 TSL 1 (best) BASIC19.19■□□□□ 0.66
CLIP3Q96DZ5 LRRC29-209ENST00000629962 1303 ntAPPRIS P1 TSL 5 BASIC19.19■□□□□ 0.66
CLIP3Q96DZ5 SDHA-220ENST00000617470 1952 ntTSL 5 BASIC19.19■□□□□ 0.66
CLIP3Q96DZ5 ZC3HAV1L-201ENST00000275766 1753 ntAPPRIS P1 TSL 1 (best) BASIC19.19■□□□□ 0.66
CLIP3Q96DZ5 HOXB2-201ENST00000330070 1562 ntAPPRIS P1 TSL 1 (best) BASIC19.19■□□□□ 0.66
CLIP3Q96DZ5 BABAM1-213ENST00000601043 1366 ntAPPRIS P3 TSL 2 BASIC19.19■□□□□ 0.66
CLIP3Q96DZ5 TAPT1-201ENST00000405303 4591 ntAPPRIS P1 TSL 1 (best) BASIC19.18■□□□□ 0.66
CLIP3Q96DZ5 HDAC11-211ENST00000433119 2043 ntTSL 1 (best) BASIC19.18■□□□□ 0.66
CLIP3Q96DZ5 RELT-202ENST00000393580 2669 ntAPPRIS P1 TSL 1 (best) BASIC19.18■□□□□ 0.66
CLIP3Q96DZ5 MARK2-211ENST00000513765 2671 ntAPPRIS ALT2 TSL 1 (best) BASIC19.18■□□□□ 0.66
CLIP3Q96DZ5 TRABD-204ENST00000395829 1628 ntAPPRIS ALT2 TSL 5 BASIC19.18■□□□□ 0.66
CLIP3Q96DZ5 MSL1-204ENST00000578648 2267 ntTSL 5 BASIC19.18■□□□□ 0.66
CLIP3Q96DZ5 TRIM4-202ENST00000354241 1942 ntTSL 1 (best) BASIC19.18■□□□□ 0.66
CLIP3Q96DZ5 PTGER3-203ENST00000354608 1470 ntAPPRIS ALT2 TSL 5 BASIC19.18■□□□□ 0.66
CLIP3Q96DZ5 MEN1-202ENST00000315422 3148 ntAPPRIS ALT1 TSL 5 BASIC19.18■□□□□ 0.66
CLIP3Q96DZ5 AC073316.3-201ENST00000437354 982 ntTSL 3 BASIC19.18■□□□□ 0.66
CLIP3Q96DZ5 CERNA3-201ENST00000521403 557 ntTSL 3 BASIC19.18■□□□□ 0.66
CLIP3Q96DZ5 RNF121-214ENST00000533380 870 ntTSL 3 BASIC19.18■□□□□ 0.66
CLIP3Q96DZ5 AC009052.1-201ENST00000567090 298 ntTSL 3 BASIC19.18■□□□□ 0.66
CLIP3Q96DZ5 ITGB1BP1-202ENST00000355346 1963 ntAPPRIS P1 TSL 1 (best) BASIC19.18■□□□□ 0.66
CLIP3Q96DZ5 TBC1D4-201ENST00000377625 6182 ntAPPRIS ALT2 TSL 1 (best) BASIC19.18■□□□□ 0.66
CLIP3Q96DZ5 WIPF1-205ENST00000409415 1772 ntTSL 1 (best) BASIC19.18■□□□□ 0.66
CLIP3Q96DZ5 CALY-201ENST00000252939 2271 ntAPPRIS P1 TSL 1 (best) BASIC19.18■□□□□ 0.66
CLIP3Q96DZ5 CDK11B-201ENST00000340677 2534 ntTSL 1 (best) BASIC19.18■□□□□ 0.66
CLIP3Q96DZ5 MBD3-207ENST00000590550 2782 ntTSL 2 BASIC19.18■□□□□ 0.66
CLIP3Q96DZ5 NDUFV3-202ENST00000354250 1575 ntTSL 1 (best) BASIC19.18■□□□□ 0.66
CLIP3Q96DZ5 GALNT10-202ENST00000377661 3778 ntTSL 5 BASIC19.18■□□□□ 0.66
CLIP3Q96DZ5 STX6-204ENST00000542060 4809 ntTSL 2 BASIC19.18■□□□□ 0.66
CLIP3Q96DZ5 CAMK2B-207ENST00000358707 1895 ntTSL 1 (best) BASIC19.18■□□□□ 0.66
CLIP3Q96DZ5 FGF2-202ENST00000608478 3880 ntAPPRIS P1 TSL 1 (best) BASIC19.18■□□□□ 0.66
CLIP3Q96DZ5 SMPD3-201ENST00000219334 5453 ntAPPRIS P1 TSL 1 (best) BASIC19.18■□□□□ 0.66
CLIP3Q96DZ5 LSM14A-202ENST00000540746 2152 ntTSL 2 BASIC19.17■□□□□ 0.66
CLIP3Q96DZ5 PPP1R36-201ENST00000298705 1405 ntAPPRIS P2 TSL 1 (best) BASIC19.17■□□□□ 0.66
CLIP3Q96DZ5 KRT8P36-201ENST00000489121 1440 ntBASIC19.17■□□□□ 0.66
CLIP3Q96DZ5 CPAMD8-202ENST00000388925 5355 ntTSL 5 BASIC19.17■□□□□ 0.66
Retrieved 100 of 98,524 protein–RNA pairs in 28.2 ms