Protein–RNA interactions for Protein: Q7Z6J0

SH3RF1, E3 ubiquitin-protein ligase SH3RF1, humanhuman

Predictions only

Length 888 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SH3RF1Q7Z6J0 KRT17P2-201ENST00000300992 1314 ntBASIC22.94■■□□□ 1.26
SH3RF1Q7Z6J0 SPATA2L-202ENST00000335360 1001 ntTSL 1 (best) BASIC22.94■■□□□ 1.26
SH3RF1Q7Z6J0 USF2-203ENST00000379134 648 ntTSL 1 (best) BASIC22.94■■□□□ 1.26
SH3RF1Q7Z6J0 AC087499.1-201ENST00000418141 1075 ntBASIC22.94■■□□□ 1.26
SH3RF1Q7Z6J0 AC008105.2-201ENST00000420431 579 ntTSL 4 BASIC22.94■■□□□ 1.26
SH3RF1Q7Z6J0 TMEM72-203ENST00000544540 1018 ntTSL 1 (best) BASIC22.94■■□□□ 1.26
SH3RF1Q7Z6J0 CRNDE-210ENST00000560912 459 ntTSL 5 BASIC22.94■■□□□ 1.26
SH3RF1Q7Z6J0 AC010646.1-201ENST00000594059 515 ntAPPRIS P1 TSL 4 BASIC22.94■■□□□ 1.26
SH3RF1Q7Z6J0 C20orf204-205ENST00000636176 961 ntAPPRIS P5 TSL 5 BASIC22.94■■□□□ 1.26
SH3RF1Q7Z6J0 CPT2-203ENST00000635862 2319 ntTSL 5 BASIC22.94■■□□□ 1.26
SH3RF1Q7Z6J0 RIPPLY3-201ENST00000329553 2235 ntAPPRIS P1 TSL 1 (best) BASIC22.94■■□□□ 1.26
SH3RF1Q7Z6J0 BX005266.2-202ENST00000446626 2245 ntTSL 1 (best) BASIC22.94■■□□□ 1.26
SH3RF1Q7Z6J0 ENPP7-201ENST00000328313 2043 ntAPPRIS P1 TSL 1 (best) BASIC22.94■■□□□ 1.26
SH3RF1Q7Z6J0 SUMF2-201ENST00000275607 1894 ntTSL 1 (best) BASIC22.94■■□□□ 1.26
SH3RF1Q7Z6J0 ST3GAL4-204ENST00000444328 1812 ntAPPRIS ALT1 TSL 5 BASIC22.94■■□□□ 1.26
SH3RF1Q7Z6J0 OGG1-205ENST00000344629 1744 ntAPPRIS ALT2 TSL 1 (best) BASIC22.94■■□□□ 1.26
SH3RF1Q7Z6J0 SENP5-204ENST00000445299 2491 ntTSL 2 BASIC22.93■■□□□ 1.26
SH3RF1Q7Z6J0 RARA-201ENST00000254066 2414 ntAPPRIS P1 TSL 1 (best) BASIC22.93■■□□□ 1.26
SH3RF1Q7Z6J0 TACO1-201ENST00000258975 1469 ntAPPRIS P1 TSL 1 (best) BASIC22.93■■□□□ 1.26
SH3RF1Q7Z6J0 NEURL3-204ENST00000451794 1461 ntAPPRIS P1 TSL 5 BASIC22.93■■□□□ 1.26
SH3RF1Q7Z6J0 USP39-204ENST00000409766 2033 ntTSL 2 BASIC22.93■■□□□ 1.26
SH3RF1Q7Z6J0 CARM1-201ENST00000327064 3330 ntAPPRIS P2 TSL 1 (best) BASIC22.93■■□□□ 1.26
SH3RF1Q7Z6J0 RPLP0-201ENST00000228306 1257 ntAPPRIS P1 TSL 1 (best) BASIC22.93■■□□□ 1.26
SH3RF1Q7Z6J0 LCN8-201ENST00000371688 867 ntAPPRIS P2 TSL 1 (best) BASIC22.93■■□□□ 1.26
SH3RF1Q7Z6J0 RCN1P1-201ENST00000400413 996 ntBASIC22.93■■□□□ 1.26
SH3RF1Q7Z6J0 ZNF337-AS1-204ENST00000428254 817 ntTSL 5 BASIC22.93■■□□□ 1.26
SH3RF1Q7Z6J0 AL390728.5-201ENST00000428687 706 ntTSL 3 BASIC22.93■■□□□ 1.26
SH3RF1Q7Z6J0 DIMT1-202ENST00000506390 1208 ntTSL 1 (best) BASIC22.93■■□□□ 1.26
SH3RF1Q7Z6J0 AP001972.3-201ENST00000530792 495 ntTSL 3 BASIC22.93■■□□□ 1.26
SH3RF1Q7Z6J0 AC009090.2-201ENST00000565829 472 ntTSL 3 BASIC22.93■■□□□ 1.26
SH3RF1Q7Z6J0 ARMC4P1-202ENST00000576034 643 ntTSL 2 BASIC22.93■■□□□ 1.26
SH3RF1Q7Z6J0 HDDC3-202ENST00000394272 1880 ntAPPRIS P1 TSL 2 BASIC22.93■■□□□ 1.26
SH3RF1Q7Z6J0 AC069431.1-201ENST00000488882 1877 ntTSL 5 BASIC22.93■■□□□ 1.26
SH3RF1Q7Z6J0 SSBP3-216ENST00000610401 3168 ntTSL 5 BASIC22.93■■□□□ 1.26
SH3RF1Q7Z6J0 RUNX3-202ENST00000338888 2629 ntAPPRIS ALT2 TSL 1 (best) BASIC22.93■■□□□ 1.26
SH3RF1Q7Z6J0 PKMYT1-204ENST00000440027 2061 ntTSL 2 BASIC22.93■■□□□ 1.26
SH3RF1Q7Z6J0 TPST2-202ENST00000398110 1968 ntAPPRIS P1 TSL 2 BASIC22.92■■□□□ 1.26
SH3RF1Q7Z6J0 TBCB-201ENST00000221855 1473 ntAPPRIS P1 TSL 1 (best) BASIC22.92■■□□□ 1.26
SH3RF1Q7Z6J0 TMEM51-201ENST00000376008 1931 ntAPPRIS P1 TSL 2 BASIC22.92■■□□□ 1.26
SH3RF1Q7Z6J0 GNB4-204ENST00000468623 1360 ntAPPRIS P1 TSL 2 BASIC22.92■■□□□ 1.26
SH3RF1Q7Z6J0 KRTAP5-AS1-201ENST00000424148 2265 ntTSL 2 BASIC22.92■■□□□ 1.26
SH3RF1Q7Z6J0 SLC25A22-228ENST00000628067 2692 ntAPPRIS P1 TSL 1 (best) BASIC22.92■■□□□ 1.26
SH3RF1Q7Z6J0 TSPAN3-207ENST00000559494 1326 ntTSL 5 BASIC22.92■■□□□ 1.26
SH3RF1Q7Z6J0 TMEFF1-201ENST00000374879 2611 ntAPPRIS P1 TSL 1 (best) BASIC22.92■■□□□ 1.26
SH3RF1Q7Z6J0 PQLC2-201ENST00000375153 2153 ntAPPRIS P1 TSL 2 BASIC22.92■■□□□ 1.26
SH3RF1Q7Z6J0 LIME1-201ENST00000309546 1178 ntAPPRIS P3 TSL 1 (best) BASIC22.92■■□□□ 1.26
SH3RF1Q7Z6J0 PARL-201ENST00000311101 1240 ntTSL 1 (best) BASIC22.92■■□□□ 1.26
SH3RF1Q7Z6J0 PRSS57-201ENST00000329267 1025 ntAPPRIS ALT2 TSL 1 (best) BASIC22.92■■□□□ 1.26
SH3RF1Q7Z6J0 ELAVL3-202ENST00000438662 1223 ntAPPRIS ALT1 TSL 5 BASIC22.92■■□□□ 1.26
SH3RF1Q7Z6J0 MYL5-206ENST00000506838 2956 ntTSL 2 BASIC22.92■■□□□ 1.26
SH3RF1Q7Z6J0 AC073896.1-201ENST00000549318 937 ntAPPRIS P1 TSL 5 BASIC22.92■■□□□ 1.26
SH3RF1Q7Z6J0 AC090877.2-202ENST00000560363 574 ntTSL 2 BASIC22.92■■□□□ 1.26
SH3RF1Q7Z6J0 PRSS57-202ENST00000613411 1090 ntAPPRIS P3 TSL 1 (best) BASIC22.92■■□□□ 1.26
SH3RF1Q7Z6J0 DXO-202ENST00000375349 1667 ntAPPRIS P1 TSL 5 BASIC22.92■■□□□ 1.26
SH3RF1Q7Z6J0 PAQR9-201ENST00000340634 2452 ntAPPRIS P1 BASIC22.92■■□□□ 1.26
SH3RF1Q7Z6J0 LMF1-212ENST00000568897 1603 ntTSL 5 BASIC22.92■■□□□ 1.26
SH3RF1Q7Z6J0 SSH3-202ENST00000308298 2046 ntTSL 2 BASIC22.92■■□□□ 1.26
SH3RF1Q7Z6J0 AC016065.1-201ENST00000500118 2413 ntTSL 2 BASIC22.92■■□□□ 1.26
SH3RF1Q7Z6J0 TPBGL-201ENST00000562197 2793 ntAPPRIS P1 BASIC22.92■■□□□ 1.26
SH3RF1Q7Z6J0 SHCBP1L-201ENST00000367547 2317 ntAPPRIS P1 TSL 1 (best) BASIC22.92■■□□□ 1.26
SH3RF1Q7Z6J0 TMPRSS5-212ENST00000545579 2163 ntAPPRIS ALT2 TSL 1 (best) BASIC22.91■■□□□ 1.26
SH3RF1Q7Z6J0 EPS8L1-201ENST00000201647 2536 ntAPPRIS P1 TSL 1 (best) BASIC22.91■■□□□ 1.26
SH3RF1Q7Z6J0 VCPKMT-202ENST00000395860 1761 ntAPPRIS P1 TSL 1 (best) BASIC22.91■■□□□ 1.26
SH3RF1Q7Z6J0 PBX1-222ENST00000627490 1769 ntTSL 2 BASIC22.91■■□□□ 1.26
SH3RF1Q7Z6J0 GNA14-201ENST00000341700 2482 ntAPPRIS P1 TSL 1 (best) BASIC22.91■■□□□ 1.26
SH3RF1Q7Z6J0 PAGR1-201ENST00000320330 1702 ntAPPRIS P1 TSL 1 (best) BASIC22.91■■□□□ 1.26
SH3RF1Q7Z6J0 DTD1-201ENST00000377452 1387 ntAPPRIS P1 TSL 1 (best) BASIC22.91■■□□□ 1.26
SH3RF1Q7Z6J0 CRK-204ENST00000574295 1391 ntTSL 5 BASIC22.91■■□□□ 1.26
SH3RF1Q7Z6J0 AC092720.2-201ENST00000602388 1665 ntBASIC22.91■■□□□ 1.26
SH3RF1Q7Z6J0 CDKN2B-AS1-217ENST00000585267 1337 ntTSL 1 (best) BASIC22.91■■□□□ 1.26
SH3RF1Q7Z6J0 SPG7-202ENST00000341316 2288 ntTSL 1 (best) BASIC22.91■■□□□ 1.26
SH3RF1Q7Z6J0 OCIAD2-205ENST00000508632 1163 ntAPPRIS P1 TSL 1 (best) BASIC22.91■■□□□ 1.26
SH3RF1Q7Z6J0 TK2-213ENST00000563369 882 ntTSL 5 BASIC22.91■■□□□ 1.26
SH3RF1Q7Z6J0 FBXO17-202ENST00000595329 1299 ntAPPRIS P1 TSL 2 BASIC22.91■■□□□ 1.26
SH3RF1Q7Z6J0 AL049637.2-201ENST00000641778 930 ntBASIC22.91■■□□□ 1.26
SH3RF1Q7Z6J0 AGMAT-201ENST00000375826 2500 ntAPPRIS P1 TSL 1 (best) BASIC22.91■■□□□ 1.26
SH3RF1Q7Z6J0 NTSR2-201ENST00000306928 1569 ntAPPRIS P1 TSL 1 (best) BASIC22.91■■□□□ 1.26
SH3RF1Q7Z6J0 PRKCD-202ENST00000394729 2810 ntAPPRIS P1 TSL 1 (best) BASIC22.91■■□□□ 1.26
SH3RF1Q7Z6J0 DTX2-212ENST00000446820 1770 ntAPPRIS ALT2 TSL 1 (best) BASIC22.91■■□□□ 1.26
SH3RF1Q7Z6J0 BYSL-201ENST00000230340 2029 ntAPPRIS P1 TSL 1 (best) BASIC22.91■■□□□ 1.26
SH3RF1Q7Z6J0 FAM213A-202ENST00000372185 1723 ntTSL 2 BASIC22.91■■□□□ 1.26
SH3RF1Q7Z6J0 FNIP1-204ENST00000511848 1720 ntTSL 1 (best) BASIC22.91■■□□□ 1.26
SH3RF1Q7Z6J0 SPATA22-210ENST00000573128 1704 ntAPPRIS P1 TSL 1 (best) BASIC22.91■■□□□ 1.26
SH3RF1Q7Z6J0 RAB5A-201ENST00000273047 2536 ntAPPRIS P1 TSL 1 (best) BASIC22.9■■□□□ 1.26
SH3RF1Q7Z6J0 ZIM2-206ENST00000599935 2226 ntAPPRIS P1 TSL 5 BASIC22.9■■□□□ 1.26
SH3RF1Q7Z6J0 ANTXR1-202ENST00000409349 1384 ntTSL 1 (best) BASIC22.9■■□□□ 1.26
SH3RF1Q7Z6J0 AC099778.1-201ENST00000568593 1911 ntBASIC22.9■■□□□ 1.26
SH3RF1Q7Z6J0 EYA2-202ENST00000327619 2702 ntAPPRIS P1 TSL 2 BASIC22.9■■□□□ 1.26
SH3RF1Q7Z6J0 CHKB-201ENST00000406938 1638 ntAPPRIS P1 TSL 1 (best) BASIC22.9■■□□□ 1.26
SH3RF1Q7Z6J0 IMPDH1-208ENST00000470772 1888 ntAPPRIS ALT1 TSL 5 BASIC22.9■■□□□ 1.26
SH3RF1Q7Z6J0 C19orf66-201ENST00000253110 2117 ntAPPRIS P3 TSL 2 BASIC22.9■■□□□ 1.26
SH3RF1Q7Z6J0 ARRB2-216ENST00000574954 1348 ntTSL 1 (best) BASIC22.9■■□□□ 1.26
SH3RF1Q7Z6J0 COX7A2L-201ENST00000234301 1112 ntAPPRIS P1 TSL 1 (best) BASIC22.9■■□□□ 1.26
SH3RF1Q7Z6J0 PRTN3-201ENST00000234347 1026 ntAPPRIS P1 TSL 1 (best) BASIC22.9■■□□□ 1.26
SH3RF1Q7Z6J0 PPP1R14A-202ENST00000347262 637 ntTSL 1 (best) BASIC22.9■■□□□ 1.26
SH3RF1Q7Z6J0 AL109797.1-201ENST00000452501 835 ntTSL 2 BASIC22.9■■□□□ 1.26
SH3RF1Q7Z6J0 BCL2L10-202ENST00000561198 825 ntAPPRIS ALT2 TSL 1 (best) BASIC22.9■■□□□ 1.26
SH3RF1Q7Z6J0 COX4I1-202ENST00000561569 716 ntAPPRIS P1 TSL 2 BASIC22.9■■□□□ 1.26
SH3RF1Q7Z6J0 LINC02256-201ENST00000561999 366 ntTSL 3 BASIC22.9■■□□□ 1.26
SH3RF1Q7Z6J0 YPEL3-207ENST00000566134 761 ntTSL 5 BASIC22.9■■□□□ 1.26
Retrieved 100 of 98,524 protein–RNA pairs in 37 ms