Protein–RNA interactions for Protein: Q6P9F5

TRIM40, Tripartite motif-containing protein 40, humanhuman

Predictions only

Length 258 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM40Q6P9F5 NUDT22-201ENST00000279206 1094 ntAPPRIS P3 TSL 1 (best) BASIC19.18■□□□□ 0.66
TRIM40Q6P9F5 BHLHA15-201ENST00000314018 706 ntAPPRIS P1 BASIC19.18■□□□□ 0.66
TRIM40Q6P9F5 CCDC103-202ENST00000410006 921 ntAPPRIS P1 TSL 2 BASIC19.18■□□□□ 0.66
TRIM40Q6P9F5 LINC01191-201ENST00000412690 844 ntTSL 2 BASIC19.18■□□□□ 0.66
TRIM40Q6P9F5 DUSP5P2-201ENST00000426873 1033 ntBASIC19.18■□□□□ 0.66
TRIM40Q6P9F5 NUDT22-204ENST00000441250 986 ntAPPRIS ALT2 TSL 5 BASIC19.18■□□□□ 0.66
TRIM40Q6P9F5 AC092171.1-201ENST00000455866 753 ntTSL 2 BASIC19.18■□□□□ 0.66
TRIM40Q6P9F5 CTBP1-AS2-203ENST00000507044 739 ntTSL 3 BASIC19.18■□□□□ 0.66
TRIM40Q6P9F5 RRAS2-203ENST00000526063 970 ntTSL 1 (best) BASIC19.18■□□□□ 0.66
TRIM40Q6P9F5 RRAS2-208ENST00000532814 982 ntTSL 1 (best) BASIC19.18■□□□□ 0.66
TRIM40Q6P9F5 AC073896.1-201ENST00000549318 937 ntAPPRIS P1 TSL 5 BASIC19.18■□□□□ 0.66
TRIM40Q6P9F5 MAGIX-202ENST00000595224 1238 ntAPPRIS P2 TSL 5 BASIC19.18■□□□□ 0.66
TRIM40Q6P9F5 BHLHA15-202ENST00000609256 796 ntAPPRIS P1 TSL 3 BASIC19.18■□□□□ 0.66
TRIM40Q6P9F5 MAPK15-201ENST00000338033 1961 ntAPPRIS P1 TSL 1 (best) BASIC19.18■□□□□ 0.66
TRIM40Q6P9F5 MAP7D2-203ENST00000443379 2476 ntAPPRIS ALT2 TSL 2 BASIC19.18■□□□□ 0.66
TRIM40Q6P9F5 LHX6-201ENST00000340587 3457 ntTSL 1 (best) BASIC19.18■□□□□ 0.66
TRIM40Q6P9F5 EPS8L1-201ENST00000201647 2536 ntAPPRIS P1 TSL 1 (best) BASIC19.18■□□□□ 0.66
TRIM40Q6P9F5 WASH6P-203ENST00000460206 1826 ntTSL 5 BASIC19.18■□□□□ 0.66
TRIM40Q6P9F5 PHF20L1-214ENST00000485595 1810 ntTSL 2 BASIC19.18■□□□□ 0.66
TRIM40Q6P9F5 ROR1-201ENST00000371079 5832 ntAPPRIS P2 TSL 1 (best) BASIC19.18■□□□□ 0.66
TRIM40Q6P9F5 SUMF2-201ENST00000275607 1894 ntTSL 1 (best) BASIC19.18■□□□□ 0.66
TRIM40Q6P9F5 KREMEN2-202ENST00000319500 1882 ntAPPRIS ALT2 TSL 1 (best) BASIC19.18■□□□□ 0.66
TRIM40Q6P9F5 POU3F2-201ENST00000328345 4879 ntAPPRIS P1 BASIC19.18■□□□□ 0.66
TRIM40Q6P9F5 MON1A-203ENST00000455683 1617 ntAPPRIS ALT2 TSL 1 (best) BASIC19.18■□□□□ 0.66
TRIM40Q6P9F5 METRNL-203ENST00000571814 1900 ntTSL 1 (best) BASIC19.17■□□□□ 0.66
TRIM40Q6P9F5 MYL5-206ENST00000506838 2956 ntTSL 2 BASIC19.17■□□□□ 0.66
TRIM40Q6P9F5 AC074212.1-201ENST00000559756 1402 ntTSL 3 BASIC19.17■□□□□ 0.66
TRIM40Q6P9F5 CDK13-202ENST00000340829 5066 ntAPPRIS ALT1 TSL 1 (best) BASIC19.17■□□□□ 0.66
TRIM40Q6P9F5 KIF26A-202ENST00000423312 5649 ntAPPRIS P2 TSL 5 BASIC19.17■□□□□ 0.66
TRIM40Q6P9F5 SH2B3-201ENST00000341259 5406 ntAPPRIS P1 TSL 1 (best) BASIC19.17■□□□□ 0.66
TRIM40Q6P9F5 UBE2C-203ENST00000352551 665 ntTSL 2 BASIC19.17■□□□□ 0.66
TRIM40Q6P9F5 XXYLT1-202ENST00000356740 564 ntTSL 2 BASIC19.17■□□□□ 0.66
TRIM40Q6P9F5 CBY3-201ENST00000376974 785 ntAPPRIS P1 TSL 2 BASIC19.17■□□□□ 0.66
TRIM40Q6P9F5 HLA-L-209ENST00000420110 1011 ntBASIC19.17■□□□□ 0.66
TRIM40Q6P9F5 ELAVL3-202ENST00000438662 1223 ntAPPRIS ALT1 TSL 5 BASIC19.17■□□□□ 0.66
TRIM40Q6P9F5 ANKRD65-202ENST00000442470 876 ntTSL 2 BASIC19.17■□□□□ 0.66
TRIM40Q6P9F5 OR2A1-AS1-201ENST00000462305 773 ntBASIC19.17■□□□□ 0.66
TRIM40Q6P9F5 AC004889.1-204ENST00000474656 773 ntTSL 3 BASIC19.17■□□□□ 0.66
TRIM40Q6P9F5 ME2-218ENST00000640965 2476 ntTSL 5 BASIC19.17■□□□□ 0.66
TRIM40Q6P9F5 TSPAN3-207ENST00000559494 1326 ntTSL 5 BASIC19.17■□□□□ 0.66
TRIM40Q6P9F5 P4HB-201ENST00000331483 2603 ntAPPRIS P1 TSL 1 (best) BASIC19.17■□□□□ 0.66
TRIM40Q6P9F5 RFXANK-201ENST00000303088 1407 ntAPPRIS P1 TSL 1 (best) BASIC19.17■□□□□ 0.66
TRIM40Q6P9F5 GPAA1-201ENST00000355091 2078 ntAPPRIS P1 TSL 1 (best) BASIC19.16■□□□□ 0.66
TRIM40Q6P9F5 INTS11-202ENST00000411962 1832 ntTSL 5 BASIC19.16■□□□□ 0.66
TRIM40Q6P9F5 KIAA0895L-206ENST00000563902 2233 ntAPPRIS P1 TSL 1 (best) BASIC19.16■□□□□ 0.66
TRIM40Q6P9F5 SPG7-202ENST00000341316 2288 ntTSL 1 (best) BASIC19.16■□□□□ 0.66
TRIM40Q6P9F5 NSDHL-201ENST00000370274 1929 ntAPPRIS P2 TSL 1 (best) BASIC19.16■□□□□ 0.66
TRIM40Q6P9F5 LACTB-202ENST00000413507 2978 ntTSL 1 (best) BASIC19.16■□□□□ 0.66
TRIM40Q6P9F5 PCDHAC2-203ENST00000615316 3011 ntBASIC19.16■□□□□ 0.66
TRIM40Q6P9F5 VPS53-201ENST00000291074 2656 ntTSL 1 (best) BASIC19.16■□□□□ 0.66
TRIM40Q6P9F5 PADI2-201ENST00000375481 1607 ntTSL 1 (best) BASIC19.16■□□□□ 0.66
TRIM40Q6P9F5 ID1-201ENST00000376105 1233 ntBASIC19.16■□□□□ 0.66
TRIM40Q6P9F5 EMC6-202ENST00000397133 762 ntAPPRIS P1 TSL 2 BASIC19.16■□□□□ 0.66
TRIM40Q6P9F5 CSF1-205ENST00000420111 1083 ntTSL 5 BASIC19.16■□□□□ 0.66
TRIM40Q6P9F5 GNAS-AS1-201ENST00000424094 1156 ntTSL 1 (best) BASIC19.16■□□□□ 0.66
TRIM40Q6P9F5 PPP1R14BP2-201ENST00000426284 444 ntBASIC19.16■□□□□ 0.66
TRIM40Q6P9F5 LINC01962-201ENST00000513771 411 ntTSL 2 BASIC19.16■□□□□ 0.66
TRIM40Q6P9F5 PAQR4-205ENST00000576565 842 ntTSL 2 BASIC19.16■□□□□ 0.66
TRIM40Q6P9F5 PLEKHJ1-205ENST00000587394 937 ntTSL 2 BASIC19.16■□□□□ 0.66
TRIM40Q6P9F5 CD24-202ENST00000610952 802 ntAPPRIS P3 TSL 2 BASIC19.16■□□□□ 0.66
TRIM40Q6P9F5 GAMT-205ENST00000640762 751 ntTSL 5 BASIC19.16■□□□□ 0.66
TRIM40Q6P9F5 SUN1-220ENST00000457378 1309 ntTSL 1 (best) BASIC19.16■□□□□ 0.66
TRIM40Q6P9F5 IL11RA-201ENST00000318041 1728 ntAPPRIS P1 TSL 1 (best) BASIC19.16■□□□□ 0.66
TRIM40Q6P9F5 UBE2N-201ENST00000318066 5186 ntAPPRIS P1 TSL 1 (best) BASIC19.16■□□□□ 0.66
TRIM40Q6P9F5 GLG1-214ENST00000627032 2147 ntTSL 5 BASIC19.16■□□□□ 0.66
TRIM40Q6P9F5 FAM43B-201ENST00000332947 2572 ntAPPRIS P1 BASIC19.16■□□□□ 0.66
TRIM40Q6P9F5 GRB10-201ENST00000335866 5032 ntTSL 1 (best) BASIC19.16■□□□□ 0.66
TRIM40Q6P9F5 UBC-201ENST00000339647 2688 ntAPPRIS P1 TSL 1 (best) BASIC19.16■□□□□ 0.66
TRIM40Q6P9F5 ARMC9-201ENST00000349938 2300 ntAPPRIS P1 TSL 1 (best) BASIC19.16■□□□□ 0.66
TRIM40Q6P9F5 EBF1-202ENST00000380654 2345 ntTSL 1 (best) BASIC19.16■□□□□ 0.66
TRIM40Q6P9F5 LSM11-201ENST00000286307 6584 ntAPPRIS P1 TSL 1 (best) BASIC19.16■□□□□ 0.66
TRIM40Q6P9F5 AC099778.1-201ENST00000568593 1911 ntBASIC19.15■□□□□ 0.66
TRIM40Q6P9F5 SLC35A3-222ENST00000640715 1989 ntTSL 5 BASIC19.15■□□□□ 0.66
TRIM40Q6P9F5 PPP1R3F-201ENST00000055335 3421 ntAPPRIS P1 TSL 2 BASIC19.15■□□□□ 0.66
TRIM40Q6P9F5 SERBP1-201ENST00000361219 2103 ntAPPRIS ALT1 TSL 1 (best) BASIC19.15■□□□□ 0.66
TRIM40Q6P9F5 MKRN1-208ENST00000474576 1661 ntTSL 5 BASIC19.15■□□□□ 0.66
TRIM40Q6P9F5 CACTIN-202ENST00000248420 2671 ntAPPRIS P1 TSL 5 BASIC19.15■□□□□ 0.66
TRIM40Q6P9F5 TNFRSF14-201ENST00000355716 1707 ntAPPRIS P2 TSL 1 (best) BASIC19.15■□□□□ 0.66
TRIM40Q6P9F5 SBK2-201ENST00000344158 1056 ntAPPRIS P1 TSL 2 BASIC19.15■□□□□ 0.66
TRIM40Q6P9F5 WIPF1-207ENST00000410117 777 ntTSL 3 BASIC19.15■□□□□ 0.66
TRIM40Q6P9F5 SBK2-202ENST00000413299 1085 ntAPPRIS P1 TSL 5 BASIC19.15■□□□□ 0.66
TRIM40Q6P9F5 DIMT1-202ENST00000506390 1208 ntTSL 1 (best) BASIC19.15■□□□□ 0.66
TRIM40Q6P9F5 AC091874.3-201ENST00000512672 1195 ntBASIC19.15■□□□□ 0.66
TRIM40Q6P9F5 TP53I11-215ENST00000531928 1078 ntTSL 3 BASIC19.15■□□□□ 0.66
TRIM40Q6P9F5 AC090527.2-201ENST00000564080 1060 ntAPPRIS P1 TSL 3 BASIC19.15■□□□□ 0.66
TRIM40Q6P9F5 AL138781.1-201ENST00000566567 1274 ntBASIC19.15■□□□□ 0.66
TRIM40Q6P9F5 AC007216.1-201ENST00000570197 601 ntTSL 4 BASIC19.15■□□□□ 0.66
TRIM40Q6P9F5 AC018730.2-201ENST00000598623 443 ntTSL 5 BASIC19.15■□□□□ 0.66
TRIM40Q6P9F5 FAM46B-201ENST00000289166 2368 ntAPPRIS P1 TSL 1 (best) BASIC19.15■□□□□ 0.66
TRIM40Q6P9F5 ODC1-202ENST00000405333 1943 ntAPPRIS P1 TSL 2 BASIC19.15■□□□□ 0.66
TRIM40Q6P9F5 KLC1-208ENST00000452929 2453 ntTSL 5 BASIC19.15■□□□□ 0.66
TRIM40Q6P9F5 SPESP1-201ENST00000310673 1431 ntAPPRIS P1 TSL 1 (best) BASIC19.15■□□□□ 0.66
TRIM40Q6P9F5 PCDHB12-202ENST00000622978 2093 ntTSL 2 BASIC19.15■□□□□ 0.66
TRIM40Q6P9F5 MSLN-205ENST00000563941 2109 ntAPPRIS ALT2 TSL 1 (best) BASIC19.15■□□□□ 0.66
TRIM40Q6P9F5 AGAP4-207ENST00000616763 2784 ntAPPRIS ALT2 TSL 1 (best) BASIC19.15■□□□□ 0.66
TRIM40Q6P9F5 PQLC2-201ENST00000375153 2153 ntAPPRIS P1 TSL 2 BASIC19.15■□□□□ 0.66
TRIM40Q6P9F5 POLD2-201ENST00000223361 1597 ntTSL 5 BASIC19.15■□□□□ 0.66
TRIM40Q6P9F5 NFKBIE-204ENST00000619360 2327 ntAPPRIS P1 TSL 1 (best) BASIC19.14■□□□□ 0.66
TRIM40Q6P9F5 ADRA1A-203ENST00000380572 1697 ntTSL 1 (best) BASIC19.14■□□□□ 0.66
TRIM40Q6P9F5 IRX5-202ENST00000394636 2401 ntAPPRIS P3 TSL 3 BASIC19.14■□□□□ 0.66
Retrieved 100 of 98,524 protein–RNA pairs in 32 ms