Protein–RNA interactions for Protein: Q68DV7

RNF43, E3 ubiquitin-protein ligase RNF43, humanhuman

Predictions only

Length 783 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RNF43Q68DV7 CERKL-201ENST00000339098 1677 ntAPPRIS P3 TSL 1 (best) BASIC20.92■□□□□ 0.94
RNF43Q68DV7 SUMF2-204ENST00000395436 1683 ntAPPRIS ALT2 TSL 1 (best) BASIC20.92■□□□□ 0.94
RNF43Q68DV7 PKMYT1-216ENST00000574730 1806 ntTSL 2 BASIC20.92■□□□□ 0.94
RNF43Q68DV7 AMZ1-202ENST00000407112 1862 ntTSL 2 BASIC20.92■□□□□ 0.94
RNF43Q68DV7 CHRNA3-202ENST00000348639 2030 ntTSL 1 (best) BASIC20.92■□□□□ 0.94
RNF43Q68DV7 TPCN2-205ENST00000542467 2000 ntTSL 2 BASIC20.92■□□□□ 0.94
RNF43Q68DV7 AC008105.1-201ENST00000587534 2003 ntTSL 2 BASIC20.92■□□□□ 0.94
RNF43Q68DV7 FEZF1-203ENST00000442488 2099 ntAPPRIS P1 TSL 1 (best) BASIC20.92■□□□□ 0.94
RNF43Q68DV7 GNA15-201ENST00000262958 2133 ntAPPRIS P1 TSL 1 (best) BASIC20.92■□□□□ 0.94
RNF43Q68DV7 DNAAF3-201ENST00000391720 2169 ntAPPRIS P3 TSL 2 BASIC20.92■□□□□ 0.94
RNF43Q68DV7 ZNF276-208ENST00000568064 2203 ntTSL 5 BASIC20.92■□□□□ 0.94
RNF43Q68DV7 TCIRG1-213ENST00000532635 2457 ntTSL 1 (best) BASIC20.92■□□□□ 0.94
RNF43Q68DV7 PTPA-204ENST00000355007 2515 ntTSL 5 BASIC20.92■□□□□ 0.94
RNF43Q68DV7 SOCS2-201ENST00000340600 2761 ntAPPRIS P1 TSL 1 (best) BASIC20.91■□□□□ 0.94
RNF43Q68DV7 PGAM5-203ENST00000498926 2834 ntAPPRIS P1 TSL 2 BASIC20.91■□□□□ 0.94
RNF43Q68DV7 ADRM1-201ENST00000253003 1478 ntAPPRIS P1 TSL 1 (best) BASIC20.91■□□□□ 0.94
RNF43Q68DV7 FAM151B-201ENST00000282226 1717 ntAPPRIS P1 TSL 1 (best) BASIC20.91■□□□□ 0.94
RNF43Q68DV7 CNIH4-203ENST00000366858 702 ntTSL 3 BASIC20.91■□□□□ 0.94
RNF43Q68DV7 GMPPA-205ENST00000373917 1630 ntTSL 5 BASIC20.91■□□□□ 0.94
RNF43Q68DV7 CDC14B-203ENST00000375242 2965 ntTSL 2 BASIC20.91■□□□□ 0.94
RNF43Q68DV7 FGF7P6-201ENST00000377614 1890 ntTSL 1 (best) BASIC20.91■□□□□ 0.94
RNF43Q68DV7 PHB2-201ENST00000399433 1308 ntAPPRIS ALT1 TSL 2 BASIC20.91■□□□□ 0.94
RNF43Q68DV7 MIR1224-201ENST00000408193 85 ntBASIC20.91■□□□□ 0.94
RNF43Q68DV7 STAC-204ENST00000457375 1366 ntTSL 2 BASIC20.91■□□□□ 0.94
RNF43Q68DV7 PRMT2-210ENST00000458387 1874 ntTSL 1 (best) BASIC20.91■□□□□ 0.94
RNF43Q68DV7 ADAM9-203ENST00000466936 2053 ntTSL 2 BASIC20.91■□□□□ 0.94
RNF43Q68DV7 PYCR3-207ENST00000495276 2332 ntAPPRIS ALT2 TSL 1 (best) BASIC20.91■□□□□ 0.94
RNF43Q68DV7 SPOCK3-217ENST00000511269 1768 ntAPPRIS P3 TSL 2 BASIC20.91■□□□□ 0.94
RNF43Q68DV7 C17orf50-201ENST00000603305 569 ntTSL 3 BASIC20.91■□□□□ 0.94
RNF43Q68DV7 C17orf50-203ENST00000605587 1018 ntAPPRIS P1 TSL 1 (best) BASIC20.91■□□□□ 0.94
RNF43Q68DV7 MAGIX-206ENST00000615626 1057 ntTSL 1 (best) BASIC20.91■□□□□ 0.94
RNF43Q68DV7 MME-217ENST00000616757 1315 ntTSL 5 BASIC20.91■□□□□ 0.94
RNF43Q68DV7 BX664615.2-202ENST00000639056 1888 ntTSL 1 (best) BASIC20.91■□□□□ 0.94
RNF43Q68DV7 SP3-208ENST00000640958 2142 ntAPPRIS ALT2 TSL 1 (best) BASIC20.91■□□□□ 0.94
RNF43Q68DV7 NARS2-201ENST00000281038 2519 ntAPPRIS P1 TSL 1 (best) BASIC20.91■□□□□ 0.94
RNF43Q68DV7 ME2-218ENST00000640965 2476 ntTSL 5 BASIC20.9■□□□□ 0.94
RNF43Q68DV7 KDM3B-201ENST00000314358 6813 ntAPPRIS P1 TSL 1 (best) BASIC20.9■□□□□ 0.94
RNF43Q68DV7 FGF14-IT1-202ENST00000607251 2123 ntTSL 2 BASIC20.9■□□□□ 0.94
RNF43Q68DV7 PLEKHB1-204ENST00000398494 2061 ntAPPRIS ALT1 TSL 1 (best) BASIC20.9■□□□□ 0.94
RNF43Q68DV7 CNRIP1-201ENST00000263655 1953 ntAPPRIS P1 TSL 1 (best) BASIC20.9■□□□□ 0.94
RNF43Q68DV7 CCDC63-201ENST00000308208 1993 ntAPPRIS P3 TSL 2 BASIC20.9■□□□□ 0.94
RNF43Q68DV7 MYO1D-213ENST00000583621 1916 ntTSL 1 (best) BASIC20.9■□□□□ 0.94
RNF43Q68DV7 APLP2-204ENST00000345598 1862 ntTSL 1 (best) BASIC20.9■□□□□ 0.94
RNF43Q68DV7 SLC43A3-225ENST00000533524 1879 ntAPPRIS ALT2 TSL 2 BASIC20.9■□□□□ 0.94
RNF43Q68DV7 INPP5J-203ENST00000401755 1751 ntTSL 2 BASIC20.9■□□□□ 0.94
RNF43Q68DV7 CBLN2-201ENST00000269503 2945 ntAPPRIS P1 TSL 1 (best) BASIC20.9■□□□□ 0.94
RNF43Q68DV7 PAN3-201ENST00000380958 2833 ntAPPRIS P2 TSL 5 BASIC20.9■□□□□ 0.94
RNF43Q68DV7 ACADS-202ENST00000411593 1398 ntTSL 2 BASIC20.9■□□□□ 0.94
RNF43Q68DV7 TTC7A-201ENST00000319190 5157 ntAPPRIS P1 TSL 2 BASIC20.9■□□□□ 0.94
RNF43Q68DV7 MRPL15-201ENST00000260102 1147 ntAPPRIS P1 TSL 1 (best) BASIC20.9■□□□□ 0.94
RNF43Q68DV7 LRR1-202ENST00000318317 957 ntTSL 1 (best) BASIC20.9■□□□□ 0.94
RNF43Q68DV7 RHOC-203ENST00000369632 1026 ntAPPRIS P1 TSL 3 BASIC20.9■□□□□ 0.94
RNF43Q68DV7 LCN6-203ENST00000476567 1015 ntTSL 1 (best) BASIC20.9■□□□□ 0.94
RNF43Q68DV7 SLC29A4P2-201ENST00000504749 1089 ntBASIC20.9■□□□□ 0.94
RNF43Q68DV7 AP003097.1-201ENST00000530657 1135 ntBASIC20.9■□□□□ 0.94
RNF43Q68DV7 RHOD-202ENST00000532559 538 ntTSL 3 BASIC20.9■□□□□ 0.94
RNF43Q68DV7 SPI1-204ENST00000533968 1290 ntTSL 1 (best) BASIC20.9■□□□□ 0.94
RNF43Q68DV7 PNMA6B-201ENST00000538162 1200 ntBASIC20.9■□□□□ 0.94
RNF43Q68DV7 AC008403.3-201ENST00000598924 454 ntBASIC20.9■□□□□ 0.94
RNF43Q68DV7 CD99-210ENST00000611428 1243 ntAPPRIS ALT2 TSL 1 (best) BASIC20.9■□□□□ 0.94
RNF43Q68DV7 MIR2861-201ENST00000636310 90 ntBASIC20.9■□□□□ 0.94
RNF43Q68DV7 ESRRA-202ENST00000405666 2283 ntAPPRIS P3 TSL 1 (best) BASIC20.9■□□□□ 0.94
RNF43Q68DV7 CCDC34-202ENST00000328697 2103 ntAPPRIS ALT2 TSL 1 (best) BASIC20.9■□□□□ 0.94
RNF43Q68DV7 MBD1-216ENST00000587605 1945 ntTSL 2 BASIC20.9■□□□□ 0.94
RNF43Q68DV7 DPP10-203ENST00000393147 2758 ntAPPRIS ALT2 TSL 1 (best) BASIC20.9■□□□□ 0.94
RNF43Q68DV7 AR-204ENST00000504326 3615 ntTSL 1 (best) BASIC20.9■□□□□ 0.94
RNF43Q68DV7 BRSK2-208ENST00000528841 3586 ntAPPRIS ALT2 TSL 1 (best) BASIC20.9■□□□□ 0.94
RNF43Q68DV7 KCNK4-201ENST00000394525 1673 ntAPPRIS P1 TSL 1 (best) BASIC20.89■□□□□ 0.94
RNF43Q68DV7 TUBA4A-202ENST00000392088 2499 ntTSL 2 BASIC20.89■□□□□ 0.94
RNF43Q68DV7 TRABD-204ENST00000395829 1628 ntAPPRIS ALT2 TSL 5 BASIC20.89■□□□□ 0.94
RNF43Q68DV7 GABRD-213ENST00000640067 1632 ntAPPRIS ALT2 TSL 5 BASIC20.89■□□□□ 0.94
RNF43Q68DV7 TDRD10-202ENST00000368482 2331 ntAPPRIS P3 TSL 1 (best) BASIC20.89■□□□□ 0.94
RNF43Q68DV7 HNRNPUL2-201ENST00000301785 5106 ntAPPRIS P1 TSL 1 (best) BASIC20.89■□□□□ 0.94
RNF43Q68DV7 FAM66E-201ENST00000529252 1433 ntTSL 2 BASIC20.89■□□□□ 0.94
RNF43Q68DV7 KRT19-201ENST00000361566 1390 ntAPPRIS P1 TSL 1 (best) BASIC20.89■□□□□ 0.93
RNF43Q68DV7 CRK-204ENST00000574295 1391 ntTSL 5 BASIC20.89■□□□□ 0.93
RNF43Q68DV7 RGMA-210ENST00000557301 1929 ntAPPRIS ALT2 TSL 2 BASIC20.89■□□□□ 0.93
RNF43Q68DV7 MZB1-201ENST00000302125 825 ntAPPRIS P1 TSL 1 (best) BASIC20.89■□□□□ 0.93
RNF43Q68DV7 EGFL7-202ENST00000371698 1282 ntAPPRIS P1 TSL 1 (best) BASIC20.89■□□□□ 0.93
RNF43Q68DV7 METTL5-206ENST00000409965 880 ntAPPRIS P2 TSL 1 (best) BASIC20.89■□□□□ 0.93
RNF43Q68DV7 AL161908.1-201ENST00000451449 449 ntTSL 2 BASIC20.89■□□□□ 0.93
RNF43Q68DV7 DLEU7-203ENST00000504404 1122 ntAPPRIS ALT2 TSL 1 (best) BASIC20.89■□□□□ 0.93
RNF43Q68DV7 ASGR1-204ENST00000572879 797 ntTSL 5 BASIC20.89■□□□□ 0.93
RNF43Q68DV7 FFAR3-202ENST00000594310 1182 ntAPPRIS P1 BASIC20.89■□□□□ 0.93
RNF43Q68DV7 PARP2-202ENST00000429687 1881 ntAPPRIS ALT2 TSL 1 (best) BASIC20.89■□□□□ 0.93
RNF43Q68DV7 PTPRJ-208ENST00000615445 4773 ntAPPRIS ALT2 TSL 5 BASIC20.89■□□□□ 0.93
RNF43Q68DV7 CYP1B1-207ENST00000614273 2174 ntAPPRIS P1 TSL 5 BASIC20.89■□□□□ 0.93
RNF43Q68DV7 ZNF511-201ENST00000359035 2004 ntTSL 2 BASIC20.88■□□□□ 0.93
RNF43Q68DV7 PABPC4-204ENST00000372862 2470 ntTSL 5 BASIC20.88■□□□□ 0.93
RNF43Q68DV7 TMEM235-202ENST00000421688 2490 ntAPPRIS P1 TSL 5 BASIC20.88■□□□□ 0.93
RNF43Q68DV7 TTBK1-202ENST00000304139 2449 ntTSL 5 BASIC20.88■□□□□ 0.93
RNF43Q68DV7 SLC16A5-201ENST00000329783 1934 ntAPPRIS P2 TSL 1 (best) BASIC20.88■□□□□ 0.93
RNF43Q68DV7 CACNA2D1-203ENST00000423588 1429 ntTSL 1 (best) BASIC20.88■□□□□ 0.93
RNF43Q68DV7 TMEM132A-202ENST00000453848 3346 ntAPPRIS ALT2 TSL 1 (best) BASIC20.88■□□□□ 0.93
RNF43Q68DV7 KRT8P36-201ENST00000489121 1440 ntBASIC20.88■□□□□ 0.93
RNF43Q68DV7 EPS8L1-209ENST00000588359 1407 ntTSL 5 BASIC20.88■□□□□ 0.93
RNF43Q68DV7 AC121338.2-201ENST00000622535 1744 ntBASIC20.88■□□□□ 0.93
RNF43Q68DV7 TRMT2A-201ENST00000252136 2964 ntAPPRIS P3 TSL 1 (best) BASIC20.88■□□□□ 0.93
RNF43Q68DV7 PPP1R14A-202ENST00000347262 637 ntTSL 1 (best) BASIC20.88■□□□□ 0.93
RNF43Q68DV7 N4BP2L1-203ENST00000380133 903 ntAPPRIS P1 TSL 1 (best) BASIC20.88■□□□□ 0.93
Retrieved 100 of 98,524 protein–RNA pairs in 38.9 ms