Protein–RNA interactions for Protein: P61011

SRP54, Signal recognition particle 54 kDa protein, humanhuman

Known RBP Predictions only

Length 504 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SRP54P61011 RHOC-203ENST00000369632 1026 ntAPPRIS P1 TSL 3 BASIC19.72■□□□□ 0.75
SRP54P61011 DYNLRB1-203ENST00000374846 1044 ntTSL 5 BASIC19.72■□□□□ 0.75
SRP54P61011 KCNK17-202ENST00000453413 1706 ntAPPRIS ALT2 TSL 5 BASIC19.72■□□□□ 0.75
SRP54P61011 TNFRSF18-204ENST00000486728 727 ntAPPRIS ALT2 TSL 1 (best) BASIC19.72■□□□□ 0.75
SRP54P61011 RUNDC3B-207ENST00000493037 2020 ntAPPRIS ALT2 TSL 1 (best) BASIC19.72■□□□□ 0.75
SRP54P61011 TK2-204ENST00000525974 1178 ntTSL 2 BASIC19.72■□□□□ 0.75
SRP54P61011 SOCS2-210ENST00000551556 1716 ntAPPRIS P1 TSL 1 (best) BASIC19.72■□□□□ 0.75
SRP54P61011 AL354712.1-201ENST00000563570 477 ntTSL 3 BASIC19.72■□□□□ 0.75
SRP54P61011 MMP25-AS1-204ENST00000572574 794 ntTSL 5 BASIC19.72■□□□□ 0.75
SRP54P61011 AC007375.3-201ENST00000600936 2314 ntBASIC19.72■□□□□ 0.75
SRP54P61011 AL121829.2-201ENST00000620908 328 ntBASIC19.72■□□□□ 0.75
SRP54P61011 BACE1-209ENST00000513780 1465 ntTSL 1 (best) BASIC19.72■□□□□ 0.75
SRP54P61011 FAM58A-204ENST00000576892 1306 ntAPPRIS ALT2 TSL 1 (best) BASIC19.72■□□□□ 0.75
SRP54P61011 UGP2-201ENST00000337130 2338 ntAPPRIS P2 TSL 1 (best) BASIC19.71■□□□□ 0.75
SRP54P61011 POMGNT2-202ENST00000441964 2531 ntAPPRIS P1 TSL 4 BASIC19.71■□□□□ 0.75
SRP54P61011 HDDC3-202ENST00000394272 1880 ntAPPRIS P1 TSL 2 BASIC19.71■□□□□ 0.75
SRP54P61011 EEF1A2-202ENST00000298049 1748 ntAPPRIS P1 TSL 1 (best) BASIC19.71■□□□□ 0.75
SRP54P61011 LYPD1-201ENST00000345008 1033 ntTSL 1 (best) BASIC19.71■□□□□ 0.75
SRP54P61011 WDR45-207ENST00000376372 1639 ntAPPRIS P1 TSL 1 (best) BASIC19.71■□□□□ 0.75
SRP54P61011 MON1A-203ENST00000455683 1617 ntAPPRIS ALT2 TSL 1 (best) BASIC19.71■□□□□ 0.75
SRP54P61011 DMRT2-203ENST00000358146 1965 ntAPPRIS P1 TSL 1 (best) BASIC19.71■□□□□ 0.75
SRP54P61011 AC007225.1-201ENST00000566331 1836 ntBASIC19.71■□□□□ 0.75
SRP54P61011 DNAAF3-201ENST00000391720 2169 ntAPPRIS P3 TSL 2 BASIC19.71■□□□□ 0.75
SRP54P61011 UPF3A-202ENST00000375299 2387 ntAPPRIS P1 TSL 1 (best) BASIC19.71■□□□□ 0.75
SRP54P61011 PHF7-201ENST00000327906 2130 ntAPPRIS P1 TSL 1 (best) BASIC19.7■□□□□ 0.74
SRP54P61011 SLAIN1-206ENST00000418532 2855 ntAPPRIS ALT2 TSL 5 BASIC19.7■□□□□ 0.74
SRP54P61011 ANKRD13D-202ENST00000447274 2881 ntTSL 1 (best) BASIC19.7■□□□□ 0.74
SRP54P61011 MAML1-201ENST00000292599 5723 ntAPPRIS P1 TSL 1 (best) BASIC19.7■□□□□ 0.74
SRP54P61011 KRT8P20-201ENST00000423953 1409 ntBASIC19.7■□□□□ 0.74
SRP54P61011 AC007383.3-201ENST00000453039 1411 ntTSL 3 BASIC19.7■□□□□ 0.74
SRP54P61011 HOXC13-AS-201ENST00000512916 1408 ntTSL 3 BASIC19.7■□□□□ 0.74
SRP54P61011 SCLY-201ENST00000254663 2562 ntAPPRIS P1 TSL 1 (best) BASIC19.7■□□□□ 0.74
SRP54P61011 EVC-201ENST00000264956 6431 ntAPPRIS P1 TSL 1 (best) BASIC19.7■□□□□ 0.74
SRP54P61011 FOXD4L3-201ENST00000342833 2039 ntAPPRIS P1 BASIC19.7■□□□□ 0.74
SRP54P61011 KCNK6-201ENST00000263372 5722 ntAPPRIS P1 TSL 1 (best) BASIC19.7■□□□□ 0.74
SRP54P61011 CPNE2-201ENST00000290776 2645 ntAPPRIS P1 TSL 1 (best) BASIC19.7■□□□□ 0.74
SRP54P61011 IFI6-203ENST00000362020 828 ntAPPRIS ALT2 TSL 1 (best) BASIC19.7■□□□□ 0.74
SRP54P61011 NKAIN4-201ENST00000370307 793 ntTSL 5 BASIC19.7■□□□□ 0.74
SRP54P61011 C5orf56-203ENST00000378953 942 ntAPPRIS ALT2 TSL 2 BASIC19.7■□□□□ 0.74
SRP54P61011 FKBP2-202ENST00000394540 1002 ntAPPRIS P1 TSL 1 (best) BASIC19.7■□□□□ 0.74
SRP54P61011 HAGLROS-201ENST00000426615 1121 ntTSL 2 BASIC19.7■□□□□ 0.74
SRP54P61011 STK24-AS1-201ENST00000434547 1278 ntTSL 1 (best) BASIC19.7■□□□□ 0.74
SRP54P61011 ELAVL3-202ENST00000438662 1223 ntAPPRIS ALT1 TSL 5 BASIC19.7■□□□□ 0.74
SRP54P61011 MAX-217ENST00000557277 728 ntTSL 3 BASIC19.7■□□□□ 0.74
SRP54P61011 AC090877.2-202ENST00000560363 574 ntTSL 2 BASIC19.7■□□□□ 0.74
SRP54P61011 AL031963.3-201ENST00000606441 850 ntBASIC19.7■□□□□ 0.74
SRP54P61011 TACC3-213ENST00000617535 1693 ntTSL 5 BASIC19.7■□□□□ 0.74
SRP54P61011 FDFT1-210ENST00000525954 1890 ntTSL 2 BASIC19.7■□□□□ 0.74
SRP54P61011 DAPK3-202ENST00000545797 2257 ntAPPRIS P1 TSL 2 BASIC19.7■□□□□ 0.74
SRP54P61011 RNF165-205ENST00000588679 2904 ntBASIC19.7■□□□□ 0.74
SRP54P61011 SOX3-201ENST00000370536 2132 ntAPPRIS P1 BASIC19.7■□□□□ 0.74
SRP54P61011 PPP3CC-201ENST00000240139 2189 ntAPPRIS P3 TSL 1 (best) BASIC19.7■□□□□ 0.74
SRP54P61011 AC005229.4-201ENST00000610085 2198 ntBASIC19.7■□□□□ 0.74
SRP54P61011 ZNF669-201ENST00000343381 1951 ntAPPRIS P3 TSL 1 (best) BASIC19.7■□□□□ 0.74
SRP54P61011 EBF4-202ENST00000380648 2910 ntAPPRIS P2 TSL 5 BASIC19.69■□□□□ 0.74
SRP54P61011 PIGH-201ENST00000216452 1420 ntAPPRIS P2 TSL 1 (best) BASIC19.69■□□□□ 0.74
SRP54P61011 ENOSF1-201ENST00000251101 1867 ntAPPRIS P1 TSL 1 (best) BASIC19.69■□□□□ 0.74
SRP54P61011 NEUROG1-201ENST00000314744 1668 ntAPPRIS P1 BASIC19.69■□□□□ 0.74
SRP54P61011 GORAB-201ENST00000367762 1699 ntTSL 1 (best) BASIC19.69■□□□□ 0.74
SRP54P61011 LINC01140-202ENST00000467438 2375 ntTSL 2 BASIC19.69■□□□□ 0.74
SRP54P61011 KDELR3-201ENST00000216014 1728 ntAPPRIS P1 TSL 1 (best) BASIC19.69■□□□□ 0.74
SRP54P61011 TSTD1-201ENST00000318289 626 ntAPPRIS P3 TSL 1 (best) BASIC19.69■□□□□ 0.74
SRP54P61011 CENPS-CORT-202ENST00000465026 494 ntTSL 3 BASIC19.69■□□□□ 0.74
SRP54P61011 CENPS-CORT-203ENST00000470413 626 ntTSL 2 BASIC19.69■□□□□ 0.74
SRP54P61011 EXOSC4-202ENST00000525936 606 ntTSL 3 BASIC19.69■□□□□ 0.74
SRP54P61011 TMEM72-203ENST00000544540 1018 ntTSL 1 (best) BASIC19.69■□□□□ 0.74
SRP54P61011 UBALD1-209ENST00000591897 1275 ntTSL 2 BASIC19.69■□□□□ 0.74
SRP54P61011 CORO1B-210ENST00000627576 960 ntTSL 5 BASIC19.69■□□□□ 0.74
SRP54P61011 MGAT3-201ENST00000341184 5062 ntAPPRIS P1 TSL 1 (best) BASIC19.69■□□□□ 0.74
SRP54P61011 SLC13A3-204ENST00000413164 2008 ntTSL 2 BASIC19.69■□□□□ 0.74
SRP54P61011 FASTK-201ENST00000297532 1827 ntAPPRIS P1 TSL 1 (best) BASIC19.69■□□□□ 0.74
SRP54P61011 HDAC4-201ENST00000345617 8976 ntAPPRIS P1 TSL 1 (best) BASIC19.69■□□□□ 0.74
SRP54P61011 HDAC4-215ENST00000543185 8990 ntTSL 5 BASIC19.69■□□□□ 0.74
SRP54P61011 DND1-201ENST00000542735 1605 ntAPPRIS P1 TSL 1 (best) BASIC19.69■□□□□ 0.74
SRP54P61011 B4GALT2-204ENST00000434555 1923 ntTSL 1 (best) BASIC19.68■□□□□ 0.74
SRP54P61011 ROR1-201ENST00000371079 5832 ntAPPRIS P2 TSL 1 (best) BASIC19.68■□□□□ 0.74
SRP54P61011 DBNDD2-203ENST00000372710 1417 ntTSL 1 (best) BASIC19.68■□□□□ 0.74
SRP54P61011 H19-201ENST00000411754 1788 ntTSL 5 BASIC19.68■□□□□ 0.74
SRP54P61011 TMEM243-201ENST00000257637 1063 ntAPPRIS P1 TSL 1 (best) BASIC19.68■□□□□ 0.74
SRP54P61011 METTL27-201ENST00000297873 941 ntAPPRIS P1 TSL 1 (best) BASIC19.68■□□□□ 0.74
SRP54P61011 MRPS24-201ENST00000317534 707 ntAPPRIS P1 TSL 1 (best) BASIC19.68■□□□□ 0.74
SRP54P61011 SULT1A1-202ENST00000350842 1282 ntTSL 3 BASIC19.68■□□□□ 0.74
SRP54P61011 S100A14-203ENST00000368701 1080 ntAPPRIS P1 TSL 2 BASIC19.68■□□□□ 0.74
SRP54P61011 PSMG1-202ENST00000380900 907 ntTSL 1 (best) BASIC19.68■□□□□ 0.74
SRP54P61011 ANKRD54-204ENST00000411961 946 ntTSL 5 BASIC19.68■□□□□ 0.74
SRP54P61011 SMIM19-201ENST00000414154 793 ntAPPRIS P1 TSL 1 (best) BASIC19.68■□□□□ 0.74
SRP54P61011 AL590666.2-201ENST00000448869 758 ntTSL 2 BASIC19.68■□□□□ 0.74
SRP54P61011 AC027682.2-201ENST00000563083 336 ntTSL 5 BASIC19.68■□□□□ 0.74
SRP54P61011 AC097641.1-201ENST00000580671 588 ntTSL 4 BASIC19.68■□□□□ 0.74
SRP54P61011 RFC2-202ENST00000352131 1576 ntTSL 1 (best) BASIC19.68■□□□□ 0.74
SRP54P61011 SERPINB5-201ENST00000382771 2783 ntAPPRIS P1 TSL 1 (best) BASIC19.68■□□□□ 0.74
SRP54P61011 FBXO28-202ENST00000424254 1334 ntTSL 1 (best) BASIC19.68■□□□□ 0.74
SRP54P61011 DLG3-201ENST00000194900 6112 ntAPPRIS ALT2 TSL 5 BASIC19.68■□□□□ 0.74
SRP54P61011 TEX45-201ENST00000361664 1679 ntAPPRIS P2 TSL 1 (best) BASIC19.68■□□□□ 0.74
SRP54P61011 CTCF-202ENST00000401394 2978 ntTSL 1 (best) BASIC19.68■□□□□ 0.74
SRP54P61011 FBXL12-205ENST00000586651 1736 ntTSL 1 (best) BASIC19.68■□□□□ 0.74
SRP54P61011 MEIS2-207ENST00000557796 2666 ntTSL 5 BASIC19.68■□□□□ 0.74
SRP54P61011 PHF20L1-214ENST00000485595 1810 ntTSL 2 BASIC19.67■□□□□ 0.74
SRP54P61011 AC009126.1-201ENST00000501338 2245 ntTSL 2 BASIC19.67■□□□□ 0.74
SRP54P61011 SOX12-201ENST00000342665 4630 ntAPPRIS P1 BASIC19.67■□□□□ 0.74
Retrieved 100 of 98,524 protein–RNA pairs in 49.4 ms