Protein–RNA interactions for Protein: P58418

CLRN1, Clarin-1, humanhuman

Predictions only

Length 232 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CLRN1P58418 YIPF2-201ENST00000253031 2087 ntAPPRIS P1 TSL 1 (best) BASIC17.85■□□□□ 0.45
CLRN1P58418 GCC2-AS1-201ENST00000322353 558 ntTSL 2 BASIC17.85■□□□□ 0.45
CLRN1P58418 SPG7-202ENST00000341316 2288 ntTSL 1 (best) BASIC17.85■□□□□ 0.45
CLRN1P58418 FICD-201ENST00000361549 1816 ntTSL 1 (best) BASIC17.85■□□□□ 0.45
CLRN1P58418 FNDC11-201ENST00000370097 1119 ntAPPRIS P1 TSL 2 BASIC17.85■□□□□ 0.45
CLRN1P58418 DLEU7-201ENST00000400393 2092 ntAPPRIS P3 TSL 1 (best) BASIC17.85■□□□□ 0.45
CLRN1P58418 AL021707.1-201ENST00000416406 500 ntTSL 3 BASIC17.85■□□□□ 0.45
CLRN1P58418 EGFR-204ENST00000420316 1570 ntTSL 1 (best) BASIC17.85■□□□□ 0.45
CLRN1P58418 HAGH-203ENST00000455446 1276 ntTSL 2 BASIC17.85■□□□□ 0.45
CLRN1P58418 SPOCK3-204ENST00000502330 2180 ntAPPRIS ALT2 TSL 1 (best) BASIC17.85■□□□□ 0.45
CLRN1P58418 ZNF302-209ENST00000507959 854 ntTSL 2 BASIC17.85■□□□□ 0.45
CLRN1P58418 TPT1-AS1-210ENST00000520590 873 ntTSL 5 BASIC17.85■□□□□ 0.45
CLRN1P58418 C12orf75-205ENST00000549893 719 ntTSL 3 BASIC17.85■□□□□ 0.45
CLRN1P58418 ANAPC11-208ENST00000572851 686 ntAPPRIS P1 TSL 1 (best) BASIC17.85■□□□□ 0.45
CLRN1P58418 UBAP1-204ENST00000625521 2029 ntTSL 2 BASIC17.85■□□□□ 0.45
CLRN1P58418 ALDH3A2-224ENST00000626500 995 ntTSL 5 BASIC17.85■□□□□ 0.45
CLRN1P58418 KCNA2-206ENST00000638477 1524 ntTSL 5 BASIC17.85■□□□□ 0.45
CLRN1P58418 DAG1-221ENST00000541308 5676 ntAPPRIS P1 TSL 5 BASIC17.85■□□□□ 0.45
CLRN1P58418 SHANK1-202ENST00000359082 6459 ntTSL 5 BASIC17.85■□□□□ 0.45
CLRN1P58418 SIMC1-203ENST00000429602 2694 ntAPPRIS ALT2 TSL 1 (best) BASIC17.85■□□□□ 0.45
CLRN1P58418 NAP1L4-212ENST00000526115 1941 ntTSL 2 BASIC17.84■□□□□ 0.45
CLRN1P58418 PAXIP1-202ENST00000404141 3827 ntAPPRIS P1 TSL 5 BASIC17.84■□□□□ 0.45
CLRN1P58418 TINAGL1-211ENST00000537531 1841 ntAPPRIS ALT2 TSL 5 BASIC17.84■□□□□ 0.45
CLRN1P58418 RANBP10-201ENST00000317506 5341 ntAPPRIS P2 TSL 1 (best) BASIC17.84■□□□□ 0.45
CLRN1P58418 RANBP10-209ENST00000630626 5305 ntAPPRIS ALT2 TSL 5 BASIC17.84■□□□□ 0.45
CLRN1P58418 RTN1-202ENST00000342503 1703 ntAPPRIS ALT1 TSL 1 (best) BASIC17.84■□□□□ 0.45
CLRN1P58418 SETD6-201ENST00000219315 1553 ntAPPRIS ALT2 TSL 1 (best) BASIC17.84■□□□□ 0.45
CLRN1P58418 MYH7B-201ENST00000262873 6293 ntAPPRIS P2 TSL 1 (best) BASIC17.84■□□□□ 0.45
CLRN1P58418 KLHDC9-201ENST00000368011 1314 ntAPPRIS P1 TSL 1 (best) BASIC17.84■□□□□ 0.45
CLRN1P58418 UBE2E3-201ENST00000392415 1347 ntAPPRIS P1 TSL 3 BASIC17.84■□□□□ 0.45
CLRN1P58418 CLDN3-201ENST00000395145 1274 ntAPPRIS P1 BASIC17.84■□□□□ 0.45
CLRN1P58418 FBXL8-203ENST00000518148 1054 ntTSL 2 BASIC17.84■□□□□ 0.45
CLRN1P58418 SNAP23-210ENST00000564153 775 ntTSL 2 BASIC17.84■□□□□ 0.45
CLRN1P58418 BEAN1-AS1-201ENST00000564618 533 ntTSL 4 BASIC17.84■□□□□ 0.45
CLRN1P58418 Z97986.1-201ENST00000565879 476 ntTSL 5 BASIC17.84■□□□□ 0.45
CLRN1P58418 AL121832.2-201ENST00000610979 668 ntBASIC17.84■□□□□ 0.45
CLRN1P58418 MAP3K14-AS1-203ENST00000585780 2475 ntTSL 2 BASIC17.84■□□□□ 0.45
CLRN1P58418 TMEM8A-204ENST00000431232 3691 ntAPPRIS P2 TSL 1 (best) BASIC17.84■□□□□ 0.45
CLRN1P58418 ACVR1B-201ENST00000257963 4563 ntAPPRIS P1 TSL 1 (best) BASIC17.84■□□□□ 0.45
CLRN1P58418 DYNLT3-201ENST00000378578 2217 ntAPPRIS P1 TSL 1 (best) BASIC17.84■□□□□ 0.45
CLRN1P58418 MFHAS1-201ENST00000276282 6414 ntAPPRIS P1 TSL 1 (best) BASIC17.84■□□□□ 0.45
CLRN1P58418 UBXN6-201ENST00000301281 1943 ntAPPRIS P1 TSL 1 (best) BASIC17.84■□□□□ 0.45
CLRN1P58418 SUMF2-201ENST00000275607 1894 ntTSL 1 (best) BASIC17.84■□□□□ 0.45
CLRN1P58418 EYA2-202ENST00000327619 2702 ntAPPRIS P1 TSL 2 BASIC17.84■□□□□ 0.45
CLRN1P58418 SNX3-201ENST00000230085 1755 ntAPPRIS P1 TSL 1 (best) BASIC17.84■□□□□ 0.45
CLRN1P58418 PRSS33-204ENST00000576886 1755 ntTSL 1 (best) BASIC17.84■□□□□ 0.45
CLRN1P58418 PBX1-222ENST00000627490 1769 ntTSL 2 BASIC17.84■□□□□ 0.45
CLRN1P58418 LINC01558-202ENST00000495520 1652 ntTSL 2 BASIC17.83■□□□□ 0.45
CLRN1P58418 TLE3-226ENST00000627388 5742 ntAPPRIS ALT1 TSL 5 BASIC17.83■□□□□ 0.45
CLRN1P58418 OBSL1-203ENST00000373876 5503 ntTSL 5 BASIC17.83■□□□□ 0.45
CLRN1P58418 SCRN2-201ENST00000290216 1548 ntAPPRIS P1 TSL 1 (best) BASIC17.83■□□□□ 0.45
CLRN1P58418 KRTAP5-AS1-201ENST00000424148 2265 ntTSL 2 BASIC17.83■□□□□ 0.45
CLRN1P58418 LHX6-201ENST00000340587 3457 ntTSL 1 (best) BASIC17.83■□□□□ 0.45
CLRN1P58418 CADPS2-201ENST00000313070 6065 ntTSL 5 BASIC17.83■□□□□ 0.45
CLRN1P58418 LINC00482-201ENST00000332012 2023 ntTSL 1 (best) BASIC17.83■□□□□ 0.45
CLRN1P58418 GPR35-202ENST00000403859 2032 ntAPPRIS P3 TSL 2 BASIC17.83■□□□□ 0.45
CLRN1P58418 C7orf43-206ENST00000456769 2046 ntTSL 2 BASIC17.83■□□□□ 0.45
CLRN1P58418 PCBP4-212ENST00000484633 2009 ntTSL 5 BASIC17.83■□□□□ 0.45
CLRN1P58418 MCTP1-218ENST00000515393 5396 ntAPPRIS P3 TSL 1 (best) BASIC17.83■□□□□ 0.45
CLRN1P58418 NXN-202ENST00000537628 1340 ntTSL 3 BASIC17.83■□□□□ 0.44
CLRN1P58418 TCF3P1-201ENST00000423021 1937 ntBASIC17.83■□□□□ 0.44
CLRN1P58418 TAF9-201ENST00000217893 1283 ntAPPRIS P2 TSL 1 (best) BASIC17.83■□□□□ 0.44
CLRN1P58418 GAR1-201ENST00000226796 1224 ntAPPRIS P1 TSL 1 (best) BASIC17.83■□□□□ 0.44
CLRN1P58418 FAM72A-203ENST00000367129 676 ntTSL 3 BASIC17.83■□□□□ 0.44
CLRN1P58418 BX276092.2-201ENST00000417668 665 ntBASIC17.83■□□□□ 0.44
CLRN1P58418 SERPINH1P1-201ENST00000419794 1249 ntBASIC17.83■□□□□ 0.44
CLRN1P58418 FAM229A-204ENST00000432622 699 ntAPPRIS P2 TSL 2 BASIC17.83■□□□□ 0.44
CLRN1P58418 FAM72A-205ENST00000468509 629 ntTSL 5 BASIC17.83■□□□□ 0.44
CLRN1P58418 TMEM41B-205ENST00000533723 723 ntTSL 2 BASIC17.83■□□□□ 0.44
CLRN1P58418 OAS3-207ENST00000551007 998 ntTSL 2 BASIC17.83■□□□□ 0.44
CLRN1P58418 C2orf69P4-201ENST00000565394 541 ntBASIC17.83■□□□□ 0.44
CLRN1P58418 ULK4P1-204ENST00000565949 721 ntTSL 4 BASIC17.83■□□□□ 0.44
CLRN1P58418 ME2-218ENST00000640965 2476 ntTSL 5 BASIC17.83■□□□□ 0.44
CLRN1P58418 TPCN2-209ENST00000637504 2736 ntTSL 5 BASIC17.83■□□□□ 0.44
CLRN1P58418 POLD2-201ENST00000223361 1597 ntTSL 5 BASIC17.83■□□□□ 0.44
CLRN1P58418 BX119927.1-201ENST00000636596 1552 ntBASIC17.83■□□□□ 0.44
CLRN1P58418 ANKRD40-201ENST00000285243 4184 ntAPPRIS P1 TSL 1 (best) BASIC17.83■□□□□ 0.44
CLRN1P58418 SEMA6B-202ENST00000586965 2034 ntAPPRIS ALT2 TSL 1 (best) BASIC17.82■□□□□ 0.44
CLRN1P58418 PFKFB3-202ENST00000360521 1964 ntAPPRIS P2 TSL 5 BASIC17.82■□□□□ 0.44
CLRN1P58418 HAUS4-202ENST00000342454 1474 ntTSL 1 (best) BASIC17.82■□□□□ 0.44
CLRN1P58418 SRSF4-201ENST00000373795 2387 ntAPPRIS P2 TSL 1 (best) BASIC17.82■□□□□ 0.44
CLRN1P58418 SPAST-203ENST00000615843 5212 ntAPPRIS P4 TSL 1 (best) BASIC17.82■□□□□ 0.44
CLRN1P58418 WWC3-201ENST00000380861 6647 ntAPPRIS P1 TSL 1 (best) BASIC17.82■□□□□ 0.44
CLRN1P58418 RUSC2-202ENST00000455600 5636 ntAPPRIS P1 TSL 1 (best) BASIC17.82■□□□□ 0.44
CLRN1P58418 UBXN2A-201ENST00000309033 6066 ntAPPRIS P1 TSL 1 (best) BASIC17.82■□□□□ 0.44
CLRN1P58418 ZNF282-204ENST00000610704 3722 ntAPPRIS P1 TSL 1 (best) BASIC17.82■□□□□ 0.44
CLRN1P58418 TAF7-201ENST00000313368 2334 ntAPPRIS P1 BASIC17.82■□□□□ 0.44
CLRN1P58418 ANKS1A-201ENST00000360359 6347 ntAPPRIS P1 TSL 1 (best) BASIC17.82■□□□□ 0.44
CLRN1P58418 SUN1-220ENST00000457378 1309 ntTSL 1 (best) BASIC17.82■□□□□ 0.44
CLRN1P58418 SNAP91-211ENST00000520213 2168 ntTSL 1 (best) BASIC17.82■□□□□ 0.44
CLRN1P58418 PRTN3-201ENST00000234347 1026 ntAPPRIS P1 TSL 1 (best) BASIC17.82■□□□□ 0.44
CLRN1P58418 TRNT1-207ENST00000420393 854 ntTSL 3 BASIC17.82■□□□□ 0.44
CLRN1P58418 PITPNB-205ENST00000455418 2963 ntAPPRIS ALT1 TSL 5 BASIC17.82■□□□□ 0.44
CLRN1P58418 ATP6V0E2-211ENST00000606024 893 ntTSL 1 (best) BASIC17.82■□□□□ 0.44
CLRN1P58418 AC000035.1-201ENST00000634116 343 ntTSL 5 BASIC17.82■□□□□ 0.44
CLRN1P58418 ADRA1A-203ENST00000380572 1697 ntTSL 1 (best) BASIC17.82■□□□□ 0.44
CLRN1P58418 GRB14-201ENST00000263915 2382 ntAPPRIS P1 TSL 1 (best) BASIC17.82■□□□□ 0.44
CLRN1P58418 WT1-212ENST00000640146 1554 ntAPPRIS P3 TSL 1 (best) BASIC17.82■□□□□ 0.44
CLRN1P58418 KCNMA1-252ENST00000639120 2308 ntTSL 5 BASIC17.82■□□□□ 0.44
CLRN1P58418 NAPSA-201ENST00000253719 1548 ntAPPRIS P1 TSL 1 (best) BASIC17.82■□□□□ 0.44
Retrieved 100 of 98,524 protein–RNA pairs in 26.7 ms