Protein–RNA interactions for Protein: P53973

HDA1, Histone deacetylase HDA1, yeastyeast

Predictions only

Length 706 aa.

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Protein RNA Prediction (catRAPID) Interaction (RIP-Chip)
Gene UniProt Accession Gene Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score Detected Interaction
HDA1P53973 snR190snR190 190 nt1.55□□□□□ -2.16
HDA1P53973 AZF1YOR113W 2745 nt1.54□□□□□ -2.16
HDA1P53973 QCR9YGR183C 201 nt1.54□□□□□ -2.16
HDA1P53973 MSH3YCR092C 3057 nt1.54□□□□□ -2.16
HDA1P53973 FYV10YIL097W 1551 nt1.54□□□□□ -2.16
HDA1P53973 CDC25YLR310C 4770 nt1.54□□□□□ -2.16
HDA1P53973 PIK1YNL267W 3201 nt1.54□□□□□ -2.16
HDA1P53973 SOM1YEL059C-A 225 nt1.53□□□□□ -2.16
HDA1P53973 STB6YKL072W 2301 nt1.52□□□□□ -2.17
HDA1P53973 HKR1YDR420W 5409 nt1.52□□□□□ -2.17
HDA1P53973 tM(CAU)Q2tM(CAU)Q2 78 nt1.51□□□□□ -2.17
HDA1P53973 NUP188YML103C 4968 nt1.5□□□□□ -2.17
HDA1P53973 ROM2YLR371W 4071 nt1.5□□□□□ -2.17
HDA1P53973 EST2YLR318W 2655 nt1.5□□□□□ -2.17
HDA1P53973 YLR041WYLR041W 321 nt1.5□□□□□ -2.17
HDA1P53973 YLR232WYLR232W 348 nt1.5□□□□□ -2.17
HDA1P53973 YDR524C-AYDR524C-A 120 nt1.49□□□□□ -2.17
HDA1P53973 PMP2YEL017C-A 132 nt1.49□□□□□ -2.17
HDA1P53973 YIL071W-AYIL071W-A 477 nt1.49□□□□□ -2.17
HDA1P53973 NUP157YER105C 4176 nt1.49□□□□□ -2.17
HDA1P53973 tH(GUG)E1tH(GUG)E1 72 nt1.48□□□□□ -2.17
HDA1P53973 tH(GUG)E2tH(GUG)E2 72 nt1.48□□□□□ -2.17
HDA1P53973 tH(GUG)G1tH(GUG)G1 72 nt1.48□□□□□ -2.17
HDA1P53973 tH(GUG)G2tH(GUG)G2 72 nt1.48□□□□□ -2.17
HDA1P53973 tH(GUG)HtH(GUG)H 72 nt1.48□□□□□ -2.17
HDA1P53973 tH(GUG)KtH(GUG)K 72 nt1.48□□□□□ -2.17
HDA1P53973 tH(GUG)MtH(GUG)M 72 nt1.48□□□□□ -2.17
HDA1P53973 PAU12YGR294W 363 nt1.48□□□□□ -2.17
HDA1P53973 PAU24YBR301W 363 nt1.48□□□□□ -2.17
HDA1P53973 SEC3YER008C 4011 nt1.48□□□□□ -2.17
HDA1P53973 TRM732YMR259C 4263 nt1.46□□□□□ -2.18
HDA1P53973 PET127YOR017W 2403 nt1.46□□□□□ -2.18
HDA1P53973 CCH1YGR217W 6120 nt1.45□□□□□ -2.18
HDA1P53973 YBR178WYBR178W 375 nt1.45□□□□□ -2.18
HDA1P53973 ASE1YOR058C 2658 nt1.44□□□□□ -2.18
HDA1P53973 snR39BsnR39B 96 nt1.44□□□□□ -2.18
HDA1P53973 CLU1YMR012W 3834 nt1.44□□□□□ -2.18
HDA1P53973 SEC8YPR055W 3198 nt1.43□□□□□ -2.18
HDA1P53973 RAD9YDR217C 3930 nt1.43□□□□□ -2.18
HDA1P53973 TFB5YDR079C-A 219 nt1.42□□□□□ -2.18
HDA1P53973 YDR544CYDR544C 429 nt1.42□□□□□ -2.18
HDA1P53973 YHR131W-AYHR131W-A 246 nt1.42□□□□□ -2.18
HDA1P53973 YBL109WYBL109W 336 nt1.42□□□□□ -2.18
HDA1P53973 LAA1YJL207C 6045 nt1.42□□□□□ -2.18
HDA1P53973 PRP16YKR086W 3216 nt1.41□□□□□ -2.18
HDA1P53973 YNL103W-AYNL103W-A 90 nt1.41□□□□□ -2.18
HDA1P53973 MSN5YDR335W 3675 nt1.41□□□□□ -2.18
HDA1P53973 IML1YJR138W 4755 nt1.39□□□□□ -2.19
HDA1P53973 BEM3YPL115C 3387 nt1.38□□□□□ -2.19
HDA1P53973 YJL127W-AYJL127W-A 117 nt1.38□□□□□ -2.19
HDA1P53973 YLR399W-AYLR399W-A 105 nt1.38□□□□□ -2.19
HDA1P53973 YMR326CYMR326C 309 nt1.38□□□□□ -2.19
HDA1P53973 FYV8YGR196C 2454 nt1.38□□□□□ -2.19
HDA1P53973 snR61snR61 90 nt1.37□□□□□ -2.19
HDA1P53973 BUD3YCL014W 4911 nt1.37□□□□□ -2.19
HDA1P53973 BEM2YER155C 6504 nt1.36□□□□□ -2.19
HDA1P53973 COG6YNL041C 2520 nt1.34□□□□□ -2.19
HDA1P53973 YDR210WYDR210W 228 nt1.34□□□□□ -2.19
HDA1P53973 YPR160W-AYPR160W-A 81 nt1.34□□□□□ -2.19
HDA1P53973 YDL073WYDL073W 2955 nt1.32□□□□□ -2.2
HDA1P53973 RPM2YML091C 3609 nt1.32□□□□□ -2.2
HDA1P53973 CDC39YCR093W 6327 nt1.32□□□□□ -2.2
HDA1P53973 KAP120YPL125W 3099 nt1.31□□□□□ -2.2
HDA1P53973 tV(UAC)BtV(UAC)B 74 nt1.31□□□□□ -2.2
HDA1P53973 tV(UAC)DtV(UAC)D 74 nt1.31□□□□□ -2.2
HDA1P53973 YGR146C-AYGR146C-A 162 nt1.3□□□□□ -2.2
HDA1P53973 SIP4YJL089W 2490 nt1.3□□□□□ -2.2
HDA1P53973 YSP1YHR155W 3687 nt1.29□□□□□ -2.2
HDA1P53973 tN(GUU)QtN(GUU)Q 71 nt1.29□□□□□ -2.2
HDA1P53973 YHR217CYHR217C 462 nt1.28□□□□□ -2.2
HDA1P53973 UBP3YER151C 2739 nt1.27□□□□□ -2.21
HDA1P53973 YGL041C-BYGL041C-B 183 nt1.25□□□□□ -2.21
HDA1P53973 SEC1YDR164C 2175 nt1.25□□□□□ -2.21
HDA1P53973 BIR1YJR089W 2865 nt1.23□□□□□ -2.21
HDA1P53973 SBH1YER087C-B 249 nt1.22□□□□□ -2.21
HDA1P53973 YNL266WYNL266W 420 nt1.22□□□□□ -2.21
HDA1P53973 YBR072C-AYBR072C-A 162 nt1.22□□□□□ -2.21
HDA1P53973 SPT7YBR081C 3999 nt1.21□□□□□ -2.22
HDA1P53973 NST1YNL091W 3723 nt1.2□□□□□ -2.22
HDA1P53973 tF(GAA)BtF(GAA)B 73 nt1.19□□□□□ -2.22
HDA1P53973 tF(GAA)FtF(GAA)F 73 nt1.19□□□□□ -2.22
HDA1P53973 tF(GAA)GtF(GAA)G 73 nt1.19□□□□□ -2.22
HDA1P53973 tF(GAA)H1tF(GAA)H1 73 nt1.19□□□□□ -2.22
HDA1P53973 tF(GAA)H2tF(GAA)H2 73 nt1.19□□□□□ -2.22
HDA1P53973 tF(GAA)MtF(GAA)M 73 nt1.19□□□□□ -2.22
HDA1P53973 tF(GAA)P1tF(GAA)P1 73 nt1.19□□□□□ -2.22
HDA1P53973 tF(GAA)P2tF(GAA)P2 73 nt1.19□□□□□ -2.22
HDA1P53973 GLG1YKR058W 1851 nt1.19□□□□□ -2.22
HDA1P53973 RCO1YMR075W 2055 nt1.19□□□□□ -2.22
HDA1P53973 ULP2YIL031W 3105 nt1.18□□□□□ -2.22
HDA1P53973 YDL247W-AYDL247W-A 75 nt1.16□□□□□ -2.22
HDA1P53973 DOP1YDR141C 5097 nt1.16□□□□□ -2.22
HDA1P53973 VAM6YDL077C 3150 nt1.1□□□□□ -2.23
HDA1P53973 NNF2YGR089W 2811 nt1.1□□□□□ -2.23
HDA1P53973 EMT1tM(CAU)D 73 nt1.09□□□□□ -2.23
HDA1P53973 EMT5tM(CAU)J1 73 nt1.09□□□□□ -2.23
HDA1P53973 EMT3tM(CAU)J2 73 nt1.09□□□□□ -2.23
HDA1P53973 EMT4tM(CAU)M 73 nt1.09□□□□□ -2.23
HDA1P53973 EMT2tM(CAU)O2 73 nt1.09□□□□□ -2.23
HDA1P53973 YLL006W-AYLL006W-A 177 nt1.09□□□□□ -2.23
Retrieved 100 of 7,029 protein–RNA pairs in 53.5 ms