Protein–RNA interactions for Protein: P41235

HNF4A, Hepatocyte nuclear factor 4-alpha, humanhuman

Predictions only

Length 474 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HNF4AP41235 CXCL16-201ENST00000293778 2222 ntAPPRIS P2 TSL 1 (best) BASIC19.37■□□□□ 0.69
HNF4AP41235 HMOX2-218ENST00000619913 1908 ntAPPRIS P1 TSL 5 BASIC19.37■□□□□ 0.69
HNF4AP41235 C3orf33-201ENST00000340171 1884 ntTSL 1 (best) BASIC19.37■□□□□ 0.69
HNF4AP41235 ZNRF1-202ENST00000335325 4620 ntAPPRIS P1 TSL 1 (best) BASIC19.37■□□□□ 0.69
HNF4AP41235 SIMC1-203ENST00000429602 2694 ntAPPRIS ALT2 TSL 1 (best) BASIC19.37■□□□□ 0.69
HNF4AP41235 FBXW8-201ENST00000309909 2343 ntAPPRIS P1 TSL 1 (best) BASIC19.36■□□□□ 0.69
HNF4AP41235 KCNA2-206ENST00000638477 1524 ntTSL 5 BASIC19.36■□□□□ 0.69
HNF4AP41235 KRTAP5-AS1-201ENST00000424148 2265 ntTSL 2 BASIC19.36■□□□□ 0.69
HNF4AP41235 ZIM2-206ENST00000599935 2226 ntAPPRIS P1 TSL 5 BASIC19.36■□□□□ 0.69
HNF4AP41235 ROR1-201ENST00000371079 5832 ntAPPRIS P2 TSL 1 (best) BASIC19.36■□□□□ 0.69
HNF4AP41235 DLEU7-201ENST00000400393 2092 ntAPPRIS P3 TSL 1 (best) BASIC19.36■□□□□ 0.69
HNF4AP41235 RIMBP3C-202ENST00000433039 5784 ntAPPRIS P2 BASIC19.36■□□□□ 0.69
HNF4AP41235 GCC2-AS1-201ENST00000322353 558 ntTSL 2 BASIC19.36■□□□□ 0.69
HNF4AP41235 CD8B-205ENST00000393761 932 ntTSL 1 (best) BASIC19.36■□□□□ 0.69
HNF4AP41235 MIPEPP3-201ENST00000412105 444 ntBASIC19.36■□□□□ 0.69
HNF4AP41235 GPX1-202ENST00000419783 1146 ntAPPRIS P2 TSL 1 (best) BASIC19.36■□□□□ 0.69
HNF4AP41235 HLA-L-209ENST00000420110 1011 ntBASIC19.36■□□□□ 0.69
HNF4AP41235 CD8B-206ENST00000431506 692 ntAPPRIS ALT2 TSL 5 BASIC19.36■□□□□ 0.69
HNF4AP41235 GUSBP6-202ENST00000438529 1198 ntBASIC19.36■□□□□ 0.69
HNF4AP41235 LARGE2-208ENST00000531526 2528 ntAPPRIS P3 TSL 2 BASIC19.36■□□□□ 0.69
HNF4AP41235 TINAGL1-211ENST00000537531 1841 ntAPPRIS ALT2 TSL 5 BASIC19.36■□□□□ 0.69
HNF4AP41235 HOXC13-201ENST00000243056 2423 ntAPPRIS P1 TSL 1 (best) BASIC19.36■□□□□ 0.69
HNF4AP41235 CD37-204ENST00000535669 1674 ntTSL 2 BASIC19.36■□□□□ 0.69
HNF4AP41235 ST7-OT4-201ENST00000397750 1576 ntTSL 1 (best) BASIC19.36■□□□□ 0.69
HNF4AP41235 AC091729.3-201ENST00000423008 1401 ntTSL 2 BASIC19.35■□□□□ 0.69
HNF4AP41235 MTUS2-202ENST00000380808 1793 ntAPPRIS P3 TSL 1 (best) BASIC19.35■□□□□ 0.69
HNF4AP41235 CBWD3-201ENST00000360171 2165 ntAPPRIS P2 TSL 1 (best) BASIC19.35■□□□□ 0.69
HNF4AP41235 ASB16-201ENST00000293414 2139 ntAPPRIS P1 TSL 1 (best) BASIC19.35■□□□□ 0.69
HNF4AP41235 HES2-205ENST00000487437 968 ntTSL 3 BASIC19.35■□□□□ 0.69
HNF4AP41235 BRWD1-AS2-201ENST00000603064 1028 ntBASIC19.35■□□□□ 0.69
HNF4AP41235 AC104771.1-201ENST00000603335 964 ntBASIC19.35■□□□□ 0.69
HNF4AP41235 PFKL-212ENST00000628044 129 ntTSL 3 BASIC19.35■□□□□ 0.69
HNF4AP41235 FAM76A-205ENST00000419687 1661 ntTSL 2 BASIC19.35■□□□□ 0.69
HNF4AP41235 SOX11-201ENST00000322002 8719 ntAPPRIS P1 BASIC19.35■□□□□ 0.69
HNF4AP41235 PHKA1-204ENST00000373545 6173 ntTSL 5 BASIC19.35■□□□□ 0.69
HNF4AP41235 PTBP1P-201ENST00000554374 1601 ntBASIC19.35■□□□□ 0.69
HNF4AP41235 BCAM-201ENST00000270233 2402 ntAPPRIS P1 TSL 1 (best) BASIC19.35■□□□□ 0.69
HNF4AP41235 UAP1-201ENST00000271469 2377 ntAPPRIS ALT1 TSL 5 BASIC19.35■□□□□ 0.69
HNF4AP41235 PFKFB3-202ENST00000360521 1964 ntAPPRIS P2 TSL 5 BASIC19.35■□□□□ 0.69
HNF4AP41235 GALNT13-201ENST00000392825 5536 ntAPPRIS P1 TSL 2 BASIC19.35■□□□□ 0.69
HNF4AP41235 PYCR3-207ENST00000495276 2332 ntAPPRIS ALT2 TSL 1 (best) BASIC19.35■□□□□ 0.69
HNF4AP41235 WISP2-202ENST00000372865 1518 ntTSL 1 (best) BASIC19.35■□□□□ 0.69
HNF4AP41235 MYH14-206ENST00000596571 5988 ntAPPRIS ALT2 TSL 5 BASIC19.35■□□□□ 0.69
HNF4AP41235 SNAP91-211ENST00000520213 2168 ntTSL 1 (best) BASIC19.34■□□□□ 0.69
HNF4AP41235 RHBDD3-201ENST00000216085 1794 ntAPPRIS P1 TSL 1 (best) BASIC19.34■□□□□ 0.69
HNF4AP41235 GRB14-201ENST00000263915 2382 ntAPPRIS P1 TSL 1 (best) BASIC19.34■□□□□ 0.69
HNF4AP41235 SRSF4-201ENST00000373795 2387 ntAPPRIS P2 TSL 1 (best) BASIC19.34■□□□□ 0.69
HNF4AP41235 PCDHAC2-203ENST00000615316 3011 ntBASIC19.34■□□□□ 0.69
HNF4AP41235 ST3GAL3-239ENST00000545417 1667 ntTSL 5 BASIC19.34■□□□□ 0.69
HNF4AP41235 SUN1-220ENST00000457378 1309 ntTSL 1 (best) BASIC19.34■□□□□ 0.69
HNF4AP41235 PHLDA3-202ENST00000367311 2640 ntAPPRIS P1 TSL 1 (best) BASIC19.34■□□□□ 0.69
HNF4AP41235 FYN-204ENST00000368678 2573 ntAPPRIS ALT1 TSL 5 BASIC19.34■□□□□ 0.69
HNF4AP41235 GAR1-201ENST00000226796 1224 ntAPPRIS P1 TSL 1 (best) BASIC19.34■□□□□ 0.69
HNF4AP41235 COA6-202ENST00000366613 641 ntTSL 1 (best) BASIC19.34■□□□□ 0.69
HNF4AP41235 CLDN3-201ENST00000395145 1274 ntAPPRIS P1 BASIC19.34■□□□□ 0.69
HNF4AP41235 ELOVL2-AS1-201ENST00000456190 737 ntTSL 3 BASIC19.34■□□□□ 0.69
HNF4AP41235 FBXL8-203ENST00000518148 1054 ntTSL 2 BASIC19.34■□□□□ 0.69
HNF4AP41235 AP000785.1-201ENST00000527314 613 ntTSL 4 BASIC19.34■□□□□ 0.69
HNF4AP41235 LINC01956-201ENST00000557729 695 ntTSL 5 BASIC19.34■□□□□ 0.69
HNF4AP41235 AL138781.1-201ENST00000566567 1274 ntBASIC19.34■□□□□ 0.69
HNF4AP41235 CD24-202ENST00000610952 802 ntAPPRIS P3 TSL 2 BASIC19.34■□□□□ 0.69
HNF4AP41235 AL772284.2-201ENST00000620151 1147 ntAPPRIS P1 TSL 5 BASIC19.34■□□□□ 0.69
HNF4AP41235 AC000035.1-201ENST00000634116 343 ntTSL 5 BASIC19.34■□□□□ 0.69
HNF4AP41235 EGFR-204ENST00000420316 1570 ntTSL 1 (best) BASIC19.34■□□□□ 0.69
HNF4AP41235 CRHR1-203ENST00000339069 2490 ntTSL 2 BASIC19.34■□□□□ 0.69
HNF4AP41235 MAP3K14-AS1-203ENST00000585780 2475 ntTSL 2 BASIC19.34■□□□□ 0.69
HNF4AP41235 ATOH8-201ENST00000306279 2438 ntAPPRIS P1 TSL 1 (best) BASIC19.34■□□□□ 0.69
HNF4AP41235 ASPG-201ENST00000546892 1791 ntAPPRIS ALT2 TSL 1 (best) BASIC19.34■□□□□ 0.69
HNF4AP41235 EBF1-202ENST00000380654 2345 ntTSL 1 (best) BASIC19.34■□□□□ 0.69
HNF4AP41235 AC092835.1-201ENST00000425953 1850 ntAPPRIS P1 TSL 5 BASIC19.33■□□□□ 0.69
HNF4AP41235 RUFY3-203ENST00000417478 2143 ntTSL 1 (best) BASIC19.33■□□□□ 0.69
HNF4AP41235 MSLN-205ENST00000563941 2109 ntAPPRIS ALT2 TSL 1 (best) BASIC19.33■□□□□ 0.69
HNF4AP41235 C16orf74-201ENST00000284245 906 ntAPPRIS P2 TSL 1 (best) BASIC19.33■□□□□ 0.68
HNF4AP41235 LINC00471-201ENST00000313064 1282 ntTSL 1 (best) BASIC19.33■□□□□ 0.68
HNF4AP41235 FAM229A-204ENST00000432622 699 ntAPPRIS P2 TSL 2 BASIC19.33■□□□□ 0.68
HNF4AP41235 OR2A1-AS1-201ENST00000462305 773 ntBASIC19.33■□□□□ 0.68
HNF4AP41235 AC004889.1-204ENST00000474656 773 ntTSL 3 BASIC19.33■□□□□ 0.68
HNF4AP41235 PRELID2-204ENST00000505416 738 ntAPPRIS P2 TSL 3 BASIC19.33■□□□□ 0.68
HNF4AP41235 ANAPC11-208ENST00000572851 686 ntAPPRIS P1 TSL 1 (best) BASIC19.33■□□□□ 0.68
HNF4AP41235 PLK5-204ENST00000588430 900 ntAPPRIS ALT2 TSL 5 BASIC19.33■□□□□ 0.68
HNF4AP41235 GAMT-205ENST00000640762 751 ntTSL 5 BASIC19.33■□□□□ 0.68
HNF4AP41235 NAPSA-201ENST00000253719 1548 ntAPPRIS P1 TSL 1 (best) BASIC19.33■□□□□ 0.68
HNF4AP41235 BEAN1-202ENST00000536005 1988 ntTSL 1 (best) BASIC19.33■□□□□ 0.68
HNF4AP41235 IQCJ-SCHIP1-204ENST00000485419 2445 ntAPPRIS ALT2 TSL 2 BASIC19.33■□□□□ 0.68
HNF4AP41235 PPP5C-202ENST00000391919 1929 ntTSL 5 BASIC19.33■□□□□ 0.68
HNF4AP41235 LENG9-203ENST00000611161 1916 ntAPPRIS P1 BASIC19.33■□□□□ 0.68
HNF4AP41235 KRT8P17-201ENST00000453110 1448 ntBASIC19.33■□□□□ 0.68
HNF4AP41235 MTAP-204ENST00000460874 1434 ntTSL 2 BASIC19.33■□□□□ 0.68
HNF4AP41235 SLC4A4-201ENST00000264485 5852 ntAPPRIS P1 TSL 1 (best) BASIC19.33■□□□□ 0.68
HNF4AP41235 TBL1Y-201ENST00000346432 2312 ntAPPRIS P1 TSL 1 (best) BASIC19.33■□□□□ 0.68
HNF4AP41235 GPR50-AS1-201ENST00000454196 1620 ntTSL 2 BASIC19.33■□□□□ 0.68
HNF4AP41235 ARHGAP11A-205ENST00000563864 2279 ntTSL 5 BASIC19.32■□□□□ 0.68
HNF4AP41235 EYA2-202ENST00000327619 2702 ntAPPRIS P1 TSL 2 BASIC19.32■□□□□ 0.68
HNF4AP41235 PLCB2-204ENST00000557821 4517 ntAPPRIS ALT1 TSL 1 (best) BASIC19.32■□□□□ 0.68
HNF4AP41235 SETD6-201ENST00000219315 1553 ntAPPRIS ALT2 TSL 1 (best) BASIC19.32■□□□□ 0.68
HNF4AP41235 ST6GALNAC6-215ENST00000542456 2018 ntTSL 2 BASIC19.32■□□□□ 0.68
HNF4AP41235 NMRAL1-213ENST00000574733 1719 ntAPPRIS P1 TSL 5 BASIC19.32■□□□□ 0.68
HNF4AP41235 NAA20-202ENST00000334982 1260 ntAPPRIS P1 TSL 1 (best) BASIC19.32■□□□□ 0.68
HNF4AP41235 SMNDC1-201ENST00000369592 1110 ntAPPRIS P1 TSL 3 BASIC19.32■□□□□ 0.68
HNF4AP41235 ID1-201ENST00000376105 1233 ntBASIC19.32■□□□□ 0.68
Retrieved 100 of 98,524 protein–RNA pairs in 29.4 ms