Protein–RNA interactions for Protein: P39060

COL18A1, Collagen alpha-1(XVIII) chain, humanhuman

Predictions only

Length 1,754 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL18A1P39060 HRAS-201ENST00000311189 894 ntAPPRIS P1 TSL 1 (best) BASIC26.59■■□□□ 1.85
COL18A1P39060 GLRX2-201ENST00000367439 701 ntAPPRIS ALT2 TSL 1 (best) BASIC26.59■■□□□ 1.85
COL18A1P39060 WT1-204ENST00000448076 2114 ntAPPRIS ALT2 TSL 2 BASIC26.59■■□□□ 1.85
COL18A1P39060 ABHD11-207ENST00000458339 890 ntTSL 3 BASIC26.59■■□□□ 1.85
COL18A1P39060 AC106791.1-202ENST00000508281 1148 ntTSL 2 BASIC26.59■■□□□ 1.85
COL18A1P39060 BNIP3L-206ENST00000523515 915 ntTSL 2 BASIC26.59■■□□□ 1.85
COL18A1P39060 RAP1B-229ENST00000543393 874 ntTSL 3 BASIC26.59■■□□□ 1.85
COL18A1P39060 AP005263.1-201ENST00000579126 914 ntTSL 2 BASIC26.59■■□□□ 1.85
COL18A1P39060 PDE10A-205ENST00000616273 2118 ntTSL 2 BASIC26.59■■□□□ 1.85
COL18A1P39060 EGR4-202ENST00000545030 2372 ntAPPRIS P2 TSL 1 (best) BASIC26.59■■□□□ 1.85
COL18A1P39060 PHF20L1-214ENST00000485595 1810 ntTSL 2 BASIC26.59■■□□□ 1.85
COL18A1P39060 DMAP1-202ENST00000361745 1545 ntAPPRIS P1 TSL 1 (best) BASIC26.59■■□□□ 1.85
COL18A1P39060 NEK6-214ENST00000545174 2573 ntAPPRIS P1 TSL 1 (best) BASIC26.59■■□□□ 1.85
COL18A1P39060 FAM107B-211ENST00000468747 2633 ntAPPRIS P1 TSL 1 (best) BASIC26.59■■□□□ 1.85
COL18A1P39060 INGX-201ENST00000359239 846 ntBASIC26.58■■□□□ 1.85
COL18A1P39060 AC004980.1-204ENST00000429707 299 ntBASIC26.58■■□□□ 1.85
COL18A1P39060 AC012213.1-202ENST00000523422 449 ntTSL 3 BASIC26.58■■□□□ 1.85
COL18A1P39060 ALKAL1-202ENST00000523939 536 ntAPPRIS ALT2 TSL 1 (best) BASIC26.58■■□□□ 1.85
COL18A1P39060 GNB5-211ENST00000560116 918 ntTSL 1 (best) BASIC26.58■■□□□ 1.85
COL18A1P39060 ESRRA-203ENST00000406310 2218 ntAPPRIS ALT1 TSL 1 (best) BASIC26.58■■□□□ 1.85
COL18A1P39060 EPHX3-201ENST00000221730 1822 ntAPPRIS P1 TSL 1 (best) BASIC26.58■■□□□ 1.85
COL18A1P39060 FICD-201ENST00000361549 1816 ntTSL 1 (best) BASIC26.58■■□□□ 1.85
COL18A1P39060 HCK-203ENST00000375862 1806 ntAPPRIS ALT2 TSL 1 (best) BASIC26.58■■□□□ 1.85
COL18A1P39060 AL445686.2-201ENST00000577528 1445 ntTSL 3 BASIC26.58■■□□□ 1.85
COL18A1P39060 RTN4-207ENST00000402434 1456 ntTSL 5 BASIC26.58■■□□□ 1.85
COL18A1P39060 EPS8L1-202ENST00000245618 2198 ntTSL 1 (best) BASIC26.58■■□□□ 1.85
COL18A1P39060 TSPO2-202ENST00000373161 958 ntAPPRIS P1 TSL 1 (best) BASIC26.58■■□□□ 1.85
COL18A1P39060 HLA-G-202ENST00000376815 851 ntBASIC26.58■■□□□ 1.85
COL18A1P39060 HLA-G-203ENST00000376818 1127 ntBASIC26.58■■□□□ 1.85
COL18A1P39060 SNCB-202ENST00000393693 1234 ntAPPRIS P1 TSL 1 (best) BASIC26.58■■□□□ 1.85
COL18A1P39060 CYB561D2-204ENST00000424512 1212 ntAPPRIS P1 TSL 5 BASIC26.58■■□□□ 1.85
COL18A1P39060 TSPO2-203ENST00000470917 699 ntAPPRIS P1 TSL 1 (best) BASIC26.58■■□□□ 1.85
COL18A1P39060 WDR45-218ENST00000473974 1077 ntTSL 5 BASIC26.58■■□□□ 1.85
COL18A1P39060 ZNF706-204ENST00000518336 501 ntAPPRIS P1 TSL 4 BASIC26.58■■□□□ 1.85
COL18A1P39060 HRASLS5-205ENST00000539221 1167 ntTSL 1 (best) BASIC26.58■■□□□ 1.85
COL18A1P39060 SMAD7-207ENST00000589634 1278 ntAPPRIS ALT1 TSL 4 BASIC26.58■■□□□ 1.85
COL18A1P39060 PTGES2-202ENST00000338961 2331 ntAPPRIS P1 TSL 1 (best) BASIC26.58■■□□□ 1.85
COL18A1P39060 SMARCD2-201ENST00000225742 1800 ntTSL 1 (best) BASIC26.58■■□□□ 1.85
COL18A1P39060 TRABD2A-201ENST00000335459 1844 ntTSL 1 (best) BASIC26.58■■□□□ 1.85
COL18A1P39060 GRTP1-202ENST00000375430 1834 ntAPPRIS ALT2 TSL 1 (best) BASIC26.58■■□□□ 1.85
COL18A1P39060 NFYC-204ENST00000372653 1862 ntTSL 2 BASIC26.58■■□□□ 1.85
COL18A1P39060 NIPSNAP1-201ENST00000216121 2237 ntAPPRIS P1 TSL 1 (best) BASIC26.57■■□□□ 1.84
COL18A1P39060 ZNF584-201ENST00000306910 2332 ntAPPRIS P1 TSL 1 (best) BASIC26.57■■□□□ 1.84
COL18A1P39060 KRAS-203ENST00000556131 1696 ntTSL 1 (best) BASIC26.57■■□□□ 1.84
COL18A1P39060 KHDC1-201ENST00000257765 1134 ntAPPRIS P3 TSL 1 (best) BASIC26.57■■□□□ 1.84
COL18A1P39060 DNAJC4-201ENST00000321460 1015 ntAPPRIS ALT2 TSL 1 (best) BASIC26.57■■□□□ 1.84
COL18A1P39060 DNTTIP1-201ENST00000372622 1290 ntAPPRIS P1 TSL 1 (best) BASIC26.57■■□□□ 1.84
COL18A1P39060 HDAC11-AS1-201ENST00000424112 515 ntTSL 2 BASIC26.57■■□□□ 1.84
COL18A1P39060 ATP6V0E1-204ENST00000519911 718 ntTSL 2 BASIC26.57■■□□□ 1.84
COL18A1P39060 KHDC1-207ENST00000610435 1101 ntAPPRIS P3 TSL 5 BASIC26.57■■□□□ 1.84
COL18A1P39060 MRPL23-AS1-201ENST00000419080 1876 ntTSL 3 BASIC26.57■■□□□ 1.84
COL18A1P39060 EDARADD-201ENST00000334232 858 ntTSL 1 (best) BASIC26.56■■□□□ 1.84
COL18A1P39060 LINC01786-202ENST00000453732 389 ntTSL 2 BASIC26.56■■□□□ 1.84
COL18A1P39060 CHAC1-203ENST00000487220 853 ntTSL 3 BASIC26.56■■□□□ 1.84
COL18A1P39060 FFAR4-203ENST00000604414 1142 ntTSL 3 BASIC26.56■■□□□ 1.84
COL18A1P39060 CEMP1-202ENST00000567119 1374 ntAPPRIS P2 BASIC26.56■■□□□ 1.84
COL18A1P39060 LGALS8-AS1-201ENST00000487567 1457 ntBASIC26.56■■□□□ 1.84
COL18A1P39060 CENPU-201ENST00000281453 1998 ntAPPRIS P2 TSL 1 (best) BASIC26.56■■□□□ 1.84
COL18A1P39060 CNTNAP3B-212ENST00000617422 2170 ntTSL 2 BASIC26.56■■□□□ 1.84
COL18A1P39060 CEBPB-AS1-201ENST00000613921 2648 ntTSL 3 BASIC26.56■■□□□ 1.84
COL18A1P39060 NCF1-201ENST00000289473 1396 ntAPPRIS P1 TSL 1 (best) BASIC26.56■■□□□ 1.84
COL18A1P39060 SGO1-208ENST00000437051 1187 ntAPPRIS ALT2 TSL 1 (best) BASIC26.56■■□□□ 1.84
COL18A1P39060 CLN6-221ENST00000637494 765 ntTSL 5 BASIC26.56■■□□□ 1.84
COL18A1P39060 ECE2-202ENST00000357474 2667 ntTSL 1 (best) BASIC26.55■■□□□ 1.84
COL18A1P39060 ACAA1-209ENST00000450296 1570 ntTSL 5 BASIC26.55■■□□□ 1.84
COL18A1P39060 KRT8P17-201ENST00000453110 1448 ntBASIC26.55■■□□□ 1.84
COL18A1P39060 FEZF1-202ENST00000427185 1368 ntTSL 1 (best) BASIC26.55■■□□□ 1.84
COL18A1P39060 EXOC3L2-201ENST00000252482 1230 ntTSL 1 (best) BASIC26.55■■□□□ 1.84
COL18A1P39060 SSSCA1-206ENST00000531405 879 ntTSL 2 BASIC26.55■■□□□ 1.84
COL18A1P39060 STAC3-202ENST00000546246 1014 ntTSL 2 BASIC26.55■■□□□ 1.84
COL18A1P39060 SHD-201ENST00000543264 2577 ntAPPRIS P1 TSL 1 (best) BASIC26.55■■□□□ 1.84
COL18A1P39060 SLC25A46-202ENST00000447245 1575 ntTSL 2 BASIC26.55■■□□□ 1.84
COL18A1P39060 P2RX4-202ENST00000337233 2032 ntAPPRIS P1 TSL 1 (best) BASIC26.54■■□□□ 1.84
COL18A1P39060 GIPR-202ENST00000304207 1432 ntTSL 1 (best) BASIC26.54■■□□□ 1.84
COL18A1P39060 LRRC23-202ENST00000323702 1208 ntAPPRIS ALT2 TSL 1 (best) BASIC26.54■■□□□ 1.84
COL18A1P39060 GUK1-204ENST00000366721 689 ntTSL 3 BASIC26.54■■□□□ 1.84
COL18A1P39060 GPM6B-204ENST00000398361 1033 ntTSL 2 BASIC26.54■■□□□ 1.84
COL18A1P39060 AL136307.1-201ENST00000454882 411 ntTSL 2 BASIC26.54■■□□□ 1.84
COL18A1P39060 FAM131C-201ENST00000375662 1695 ntAPPRIS P1 TSL 1 (best) BASIC26.54■■□□□ 1.84
COL18A1P39060 CNTFR-202ENST00000378980 2052 ntAPPRIS P1 TSL 1 (best) BASIC26.54■■□□□ 1.84
COL18A1P39060 AC004890.2-202ENST00000463462 1494 ntTSL 1 (best) BASIC26.54■■□□□ 1.84
COL18A1P39060 MFSD10-201ENST00000329687 2173 ntAPPRIS P1 TSL 1 (best) BASIC26.54■■□□□ 1.84
COL18A1P39060 ZNF584-202ENST00000322834 1042 ntTSL 2 BASIC26.53■■□□□ 1.84
COL18A1P39060 DUSP23-203ENST00000368109 729 ntAPPRIS P1 TSL 2 BASIC26.53■■□□□ 1.84
COL18A1P39060 TPPP3-202ENST00000393957 1058 ntAPPRIS P1 TSL 1 (best) BASIC26.53■■□□□ 1.84
COL18A1P39060 KRT18P16-201ENST00000510337 1294 ntBASIC26.53■■□□□ 1.84
COL18A1P39060 TMEM114-203ENST00000620492 945 ntAPPRIS P1 TSL 2 BASIC26.53■■□□□ 1.84
COL18A1P39060 C21orf2-202ENST00000339818 2233 ntAPPRIS P3 TSL 1 (best) BASIC26.53■■□□□ 1.84
COL18A1P39060 OSR2-203ENST00000457907 2126 ntTSL 2 BASIC26.53■■□□□ 1.84
COL18A1P39060 CRHR1-201ENST00000293493 2621 ntTSL 5 BASIC26.53■■□□□ 1.84
COL18A1P39060 PMF1-BGLAP-202ENST00000368276 852 ntTSL 3 BASIC26.53■■□□□ 1.84
COL18A1P39060 FDX2-206ENST00000492239 773 ntTSL 2 BASIC26.53■■□□□ 1.84
COL18A1P39060 AC063952.2-201ENST00000498792 1227 ntBASIC26.53■■□□□ 1.84
COL18A1P39060 MIXL1-202ENST00000542034 839 ntTSL 1 (best) BASIC26.53■■□□□ 1.84
COL18A1P39060 FAM87A-204ENST00000613235 858 ntBASIC26.53■■□□□ 1.84
COL18A1P39060 NAPEPLD-208ENST00000427257 1822 ntAPPRIS P1 TSL 2 BASIC26.53■■□□□ 1.84
COL18A1P39060 CRHR1-214ENST00000619154 2370 ntTSL 1 (best) BASIC26.53■■□□□ 1.84
COL18A1P39060 HSPB2-C11orf52-202ENST00000534100 1521 ntAPPRIS ALT2 TSL 2 BASIC26.53■■□□□ 1.84
COL18A1P39060 SEPT8-207ENST00000378719 2889 ntTSL 1 (best) BASIC26.53■■□□□ 1.84
COL18A1P39060 TMEM230-207ENST00000379286 1735 ntAPPRIS P1 TSL 2 BASIC26.53■■□□□ 1.84
Retrieved 100 of 98,524 protein–RNA pairs in 30.5 ms