Protein–RNA interactions for Protein: P20908

COL5A1, Collagen alpha-1(V) chain, humanhuman

Predicted RBP Predictions only

Length 1,838 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL5A1P20908 ARMC10P1-201ENST00000313754 855 ntBASIC19.31■□□□□ 0.68
COL5A1P20908 COX5A-201ENST00000322347 1268 ntAPPRIS P1 TSL 1 (best) BASIC19.31■□□□□ 0.68
COL5A1P20908 FAM212A-201ENST00000333323 1040 ntAPPRIS P1 TSL 1 (best) BASIC19.31■□□□□ 0.68
COL5A1P20908 TMEM64-204ENST00000519519 873 ntTSL 1 (best) BASIC19.31■□□□□ 0.68
COL5A1P20908 AL031600.3-201ENST00000566287 1124 ntTSL 5 BASIC19.31■□□□□ 0.68
COL5A1P20908 AC011445.1-201ENST00000601911 877 ntTSL 1 (best) BASIC19.31■□□□□ 0.68
COL5A1P20908 SCPEP1-216ENST00000631024 444 ntTSL 5 BASIC19.31■□□□□ 0.68
COL5A1P20908 GSX2-201ENST00000326902 1812 ntAPPRIS P1 TSL 1 (best) BASIC19.31■□□□□ 0.68
COL5A1P20908 TMEM218-213ENST00000531909 1828 ntAPPRIS P1 TSL 1 (best) BASIC19.31■□□□□ 0.68
COL5A1P20908 AGER-207ENST00000375076 1492 ntAPPRIS P1 TSL 1 (best) BASIC19.31■□□□□ 0.68
COL5A1P20908 SLC18A3-201ENST00000374115 2420 ntAPPRIS P1 BASIC19.31■□□□□ 0.68
COL5A1P20908 CSF1-203ENST00000369801 1364 ntTSL 1 (best) BASIC19.31■□□□□ 0.68
COL5A1P20908 APIP-201ENST00000395787 1366 ntAPPRIS P1 TSL 1 (best) BASIC19.31■□□□□ 0.68
COL5A1P20908 PUF60-203ENST00000453551 1842 ntTSL 1 (best) BASIC19.3■□□□□ 0.68
COL5A1P20908 NDUFB10-201ENST00000268668 705 ntAPPRIS P1 TSL 1 (best) BASIC19.3■□□□□ 0.68
COL5A1P20908 DYM-203ENST00000442713 2147 ntTSL 2 BASIC19.3■□□□□ 0.68
COL5A1P20908 DUX4L26-201ENST00000489078 1255 ntBASIC19.3■□□□□ 0.68
COL5A1P20908 LY6E-214ENST00000522971 857 ntAPPRIS P2 TSL 2 BASIC19.3■□□□□ 0.68
COL5A1P20908 GNB5-211ENST00000560116 918 ntTSL 1 (best) BASIC19.3■□□□□ 0.68
COL5A1P20908 AL031985.4-201ENST00000642138 673 ntBASIC19.3■□□□□ 0.68
COL5A1P20908 WRNIP1-203ENST00000380771 2595 ntTSL 1 (best) BASIC19.3■□□□□ 0.68
COL5A1P20908 SARDH-203ENST00000371868 2266 ntTSL 2 BASIC19.3■□□□□ 0.68
COL5A1P20908 VGLL3-201ENST00000383698 2475 ntAPPRIS ALT2 TSL 1 (best) BASIC19.3■□□□□ 0.68
COL5A1P20908 AC026310.3-201ENST00000625186 2373 ntBASIC19.3■□□□□ 0.68
COL5A1P20908 PEX11G-201ENST00000221480 1062 ntAPPRIS P1 TSL 1 (best) BASIC19.3■□□□□ 0.68
COL5A1P20908 ABCD4-228ENST00000557588 763 ntTSL 3 BASIC19.3■□□□□ 0.68
COL5A1P20908 AC002310.4-201ENST00000568114 377 ntAPPRIS P1 TSL 5 BASIC19.3■□□□□ 0.68
COL5A1P20908 WDR25-201ENST00000335290 2123 ntAPPRIS P1 TSL 1 (best) BASIC19.29■□□□□ 0.68
COL5A1P20908 FBXO27-202ENST00000509137 2130 ntAPPRIS P2 TSL 1 (best) BASIC19.29■□□□□ 0.68
COL5A1P20908 SLC1A6-203ENST00000544886 2420 ntTSL 1 (best) BASIC19.29■□□□□ 0.68
COL5A1P20908 UBL5-201ENST00000358666 513 ntAPPRIS P1 TSL 1 (best) BASIC19.29■□□□□ 0.68
COL5A1P20908 RTL8A-201ENST00000370775 1244 ntAPPRIS P1 BASIC19.29■□□□□ 0.68
COL5A1P20908 HMGB3P22-201ENST00000442010 597 ntTSL 2 BASIC19.29■□□□□ 0.68
COL5A1P20908 CFL2-205ENST00000555765 632 ntTSL 2 BASIC19.29■□□□□ 0.68
COL5A1P20908 CR392000.1-201ENST00000624770 1228 ntBASIC19.29■□□□□ 0.68
COL5A1P20908 CD7-207ENST00000584284 2021 ntAPPRIS ALT2 TSL 1 (best) BASIC19.29■□□□□ 0.68
COL5A1P20908 BACE1-209ENST00000513780 1465 ntTSL 1 (best) BASIC19.29■□□□□ 0.68
COL5A1P20908 ILDR2-204ENST00000525740 2242 ntTSL 5 BASIC19.29■□□□□ 0.68
COL5A1P20908 LMAN1L-201ENST00000309664 1873 ntAPPRIS P1 TSL 1 (best) BASIC19.29■□□□□ 0.68
COL5A1P20908 TTYH1-202ENST00000376530 1885 ntAPPRIS P3 TSL 1 (best) BASIC19.29■□□□□ 0.68
COL5A1P20908 CPNE9-205ENST00000613455 1742 ntTSL 5 BASIC19.29■□□□□ 0.68
COL5A1P20908 CBLC-201ENST00000270279 1579 ntAPPRIS P1 TSL 1 (best) BASIC19.29■□□□□ 0.68
COL5A1P20908 SETD7-202ENST00000404104 1590 ntTSL 2 BASIC19.29■□□□□ 0.68
COL5A1P20908 SPSB3-208ENST00000566339 1784 ntAPPRIS P1 TSL 1 (best) BASIC19.29■□□□□ 0.68
COL5A1P20908 RUNDC3B-207ENST00000493037 2020 ntAPPRIS ALT2 TSL 1 (best) BASIC19.28■□□□□ 0.68
COL5A1P20908 E4F1-206ENST00000565090 2028 ntTSL 1 (best) BASIC19.28■□□□□ 0.68
COL5A1P20908 DND1-201ENST00000542735 1605 ntAPPRIS P1 TSL 1 (best) BASIC19.28■□□□□ 0.68
COL5A1P20908 KCNAB3-201ENST00000303790 2458 ntAPPRIS P1 TSL 1 (best) BASIC19.28■□□□□ 0.68
COL5A1P20908 SLC29A1-207ENST00000393841 2485 ntAPPRIS P1 TSL 2 BASIC19.28■□□□□ 0.68
COL5A1P20908 PRICKLE4-202ENST00000394260 1035 ntAPPRIS ALT2 TSL 2 BASIC19.28■□□□□ 0.68
COL5A1P20908 PRICKLE4-203ENST00000394263 1155 ntAPPRIS P2 TSL 5 BASIC19.28■□□□□ 0.68
COL5A1P20908 LRRC75A-AS1-205ENST00000475953 1201 ntTSL 1 (best) BASIC19.28■□□□□ 0.68
COL5A1P20908 AC103855.2-201ENST00000533315 573 ntTSL 4 BASIC19.28■□□□□ 0.68
COL5A1P20908 CIRBP-217ENST00000588230 1013 ntTSL 5 BASIC19.28■□□□□ 0.68
COL5A1P20908 C14orf79-207ENST00000550614 1912 ntAPPRIS ALT2 TSL 1 (best) BASIC19.28■□□□□ 0.68
COL5A1P20908 RNASEH2C-203ENST00000528220 1337 ntTSL 2 BASIC19.28■□□□□ 0.68
COL5A1P20908 KRT78-201ENST00000304620 1778 ntAPPRIS P3 TSL 1 (best) BASIC19.28■□□□□ 0.68
COL5A1P20908 ERLEC1-203ENST00000405123 1756 ntTSL 5 BASIC19.28■□□□□ 0.68
COL5A1P20908 GSDMD-212ENST00000533063 1800 ntAPPRIS ALT2 TSL 1 (best) BASIC19.28■□□□□ 0.68
COL5A1P20908 KRT8P20-201ENST00000423953 1409 ntBASIC19.28■□□□□ 0.68
COL5A1P20908 C19orf12-201ENST00000323670 2464 ntAPPRIS P1 TSL 2 BASIC19.28■□□□□ 0.68
COL5A1P20908 NUP160-203ENST00000526870 1537 ntTSL 1 (best) BASIC19.28■□□□□ 0.68
COL5A1P20908 MRPL52-201ENST00000311892 1042 ntTSL 3 BASIC19.28■□□□□ 0.68
COL5A1P20908 VMO1-201ENST00000328739 766 ntAPPRIS P1 TSL 1 (best) BASIC19.28■□□□□ 0.68
COL5A1P20908 GDAP1L1-202ENST00000372952 722 ntTSL 5 BASIC19.28■□□□□ 0.68
COL5A1P20908 YBX1P10-201ENST00000444752 975 ntBASIC19.28■□□□□ 0.68
COL5A1P20908 BNIP3L-206ENST00000523515 915 ntTSL 2 BASIC19.28■□□□□ 0.68
COL5A1P20908 RAPH1-210ENST00000453034 2394 ntAPPRIS ALT2 TSL 1 (best) BASIC19.27■□□□□ 0.68
COL5A1P20908 NSUN5-204ENST00000438747 1663 ntAPPRIS P4 TSL 1 (best) BASIC19.27■□□□□ 0.68
COL5A1P20908 PCDHB12-203ENST00000624949 1963 ntTSL 2 BASIC19.27■□□□□ 0.68
COL5A1P20908 OTUB1-209ENST00000538426 1729 ntAPPRIS P2 TSL 1 (best) BASIC19.27■□□□□ 0.68
COL5A1P20908 C19orf25-206ENST00000588849 1472 ntTSL 5 BASIC19.27■□□□□ 0.68
COL5A1P20908 RITA1-201ENST00000548278 2053 ntAPPRIS P1 TSL 1 (best) BASIC19.27■□□□□ 0.68
COL5A1P20908 CPEB1-AS1-201ENST00000560650 2138 ntTSL 1 (best) BASIC19.27■□□□□ 0.68
COL5A1P20908 TRIM67-203ENST00000449018 2166 ntTSL 1 (best) BASIC19.27■□□□□ 0.68
COL5A1P20908 SLC27A4-202ENST00000372870 1557 ntTSL 1 (best) BASIC19.27■□□□□ 0.68
COL5A1P20908 FAM182B-202ENST00000376404 456 ntAPPRIS ALT2 BASIC19.27■□□□□ 0.68
COL5A1P20908 AL731557.1-201ENST00000425264 744 ntTSL 3 BASIC19.27■□□□□ 0.68
COL5A1P20908 ASPHD1-203ENST00000483405 1115 ntAPPRIS ALT2 TSL 3 BASIC19.27■□□□□ 0.68
COL5A1P20908 LY6L-201ENST00000562505 988 ntAPPRIS P1 TSL 5 BASIC19.27■□□□□ 0.68
COL5A1P20908 NDUFB9-206ENST00000522532 1319 ntTSL 2 BASIC19.27■□□□□ 0.67
COL5A1P20908 CHADL-201ENST00000216241 2533 ntAPPRIS P1 TSL 1 (best) BASIC19.27■□□□□ 0.67
COL5A1P20908 LINC02361-201ENST00000538731 1484 ntTSL 2 BASIC19.26■□□□□ 0.67
COL5A1P20908 KXD1-202ENST00000539106 1496 ntAPPRIS P1 TSL 3 BASIC19.26■□□□□ 0.67
COL5A1P20908 P2RX4-202ENST00000337233 2032 ntAPPRIS P1 TSL 1 (best) BASIC19.26■□□□□ 0.67
COL5A1P20908 ABCG4-204ENST00000615496 2459 ntAPPRIS P1 TSL 2 BASIC19.26■□□□□ 0.67
COL5A1P20908 DHRS4L2-202ENST00000397071 1117 ntTSL 2 BASIC19.26■□□□□ 0.67
COL5A1P20908 TAPBP-236ENST00000456592 817 ntTSL 5 BASIC19.26■□□□□ 0.67
COL5A1P20908 TMA16-209ENST00000513272 803 ntTSL 2 BASIC19.26■□□□□ 0.67
COL5A1P20908 HRASLS5-205ENST00000539221 1167 ntTSL 1 (best) BASIC19.26■□□□□ 0.67
COL5A1P20908 TRIM15-210ENST00000619857 2217 ntTSL 5 BASIC19.26■□□□□ 0.67
COL5A1P20908 SOX15-201ENST00000250055 1396 ntAPPRIS P1 TSL 1 (best) BASIC19.26■□□□□ 0.67
COL5A1P20908 FIP1L1-201ENST00000306932 1878 ntAPPRIS ALT2 TSL 1 (best) BASIC19.26■□□□□ 0.67
COL5A1P20908 NAE1-203ENST00000379463 1909 ntTSL 2 BASIC19.26■□□□□ 0.67
COL5A1P20908 TMCO3-201ENST00000375391 2132 ntTSL 1 (best) BASIC19.26■□□□□ 0.67
COL5A1P20908 LGALS12-203ENST00000394618 1618 ntAPPRIS P3 TSL 1 (best) BASIC19.26■□□□□ 0.67
COL5A1P20908 C7orf26-201ENST00000344417 2182 ntAPPRIS P1 TSL 2 BASIC19.26■□□□□ 0.67
COL5A1P20908 DYNLT3-203ENST00000432389 719 ntTSL 5 BASIC19.25■□□□□ 0.67
COL5A1P20908 AP002807.1-202ENST00000526897 791 ntTSL 2 BASIC19.25■□□□□ 0.67
COL5A1P20908 FBXL22-204ENST00000638704 729 ntAPPRIS ALT2 TSL 2 BASIC19.25■□□□□ 0.67
Retrieved 100 of 98,524 protein–RNA pairs in 39.9 ms