Protein–RNA interactions for Protein: P18887

XRCC1, DNA repair protein XRCC1, humanhuman

Predicted RBP Predictions only

Length 633 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
XRCC1P18887 PRKCD-202ENST00000394729 2810 ntAPPRIS P1 TSL 1 (best) BASIC19.9■□□□□ 0.78
XRCC1P18887 ZFP69-202ENST00000372706 2871 ntAPPRIS P1 TSL 1 (best) BASIC19.9■□□□□ 0.78
XRCC1P18887 ARHGAP8-204ENST00000389774 1725 ntAPPRIS ALT2 TSL 2 BASIC19.9■□□□□ 0.78
XRCC1P18887 ARRB2-202ENST00000346341 1769 ntTSL 2 BASIC19.9■□□□□ 0.78
XRCC1P18887 PRKRA-201ENST00000325748 1826 ntAPPRIS P1 TSL 1 (best) BASIC19.9■□□□□ 0.78
XRCC1P18887 GPT-205ENST00000528431 1822 ntAPPRIS P1 TSL 1 (best) BASIC19.9■□□□□ 0.78
XRCC1P18887 KLHDC2-201ENST00000298307 5514 ntAPPRIS P1 TSL 1 (best) BASIC19.9■□□□□ 0.78
XRCC1P18887 DTX4-201ENST00000227451 5642 ntAPPRIS P1 TSL 1 (best) BASIC19.9■□□□□ 0.78
XRCC1P18887 TMCO6-203ENST00000394671 1887 ntAPPRIS P1 TSL 2 BASIC19.9■□□□□ 0.78
XRCC1P18887 ZNF664-207ENST00000539644 5108 ntAPPRIS P1 TSL 1 (best) BASIC19.89■□□□□ 0.78
XRCC1P18887 AQP11-201ENST00000313578 2152 ntAPPRIS P1 TSL 1 (best) BASIC19.89■□□□□ 0.77
XRCC1P18887 SOX12-201ENST00000342665 4630 ntAPPRIS P1 BASIC19.89■□□□□ 0.77
XRCC1P18887 MARC2-201ENST00000359316 1335 ntTSL 1 (best) BASIC19.89■□□□□ 0.77
XRCC1P18887 ITPKB-202ENST00000366784 3146 ntTSL 1 (best) BASIC19.89■□□□□ 0.77
XRCC1P18887 ISCA1-203ENST00000375991 1958 ntAPPRIS P1 TSL 1 (best) BASIC19.89■□□□□ 0.77
XRCC1P18887 PKIB-206ENST00000392490 1811 ntAPPRIS P1 TSL 1 (best) BASIC19.89■□□□□ 0.77
XRCC1P18887 ANKRD39-201ENST00000393537 976 ntAPPRIS P1 TSL 1 (best) BASIC19.89■□□□□ 0.77
XRCC1P18887 RBAK-202ENST00000396912 6551 ntAPPRIS P1 TSL 1 (best) BASIC19.89■□□□□ 0.77
XRCC1P18887 COL13A1-205ENST00000398978 3093 ntAPPRIS P4 TSL 5 BASIC19.89■□□□□ 0.77
XRCC1P18887 USP39-204ENST00000409766 2033 ntTSL 2 BASIC19.89■□□□□ 0.77
XRCC1P18887 AC091729.3-201ENST00000423008 1401 ntTSL 2 BASIC19.89■□□□□ 0.77
XRCC1P18887 STPG4-207ENST00000445927 891 ntAPPRIS P1 TSL 5 BASIC19.89■□□□□ 0.77
XRCC1P18887 FAM201B-201ENST00000458407 597 ntBASIC19.89■□□□□ 0.77
XRCC1P18887 GRIK4-205ENST00000527524 5861 ntAPPRIS P1 TSL 2 BASIC19.89■□□□□ 0.77
XRCC1P18887 AC073896.1-201ENST00000549318 937 ntAPPRIS P1 TSL 5 BASIC19.89■□□□□ 0.77
XRCC1P18887 PRAF2-202ENST00000553851 1334 ntAPPRIS P1 TSL 1 (best) BASIC19.89■□□□□ 0.77
XRCC1P18887 TSPAN3-207ENST00000559494 1326 ntTSL 5 BASIC19.89■□□□□ 0.77
XRCC1P18887 DNASE1L2-203ENST00000564065 2194 ntTSL 1 (best) BASIC19.89■□□□□ 0.77
XRCC1P18887 DET1-207ENST00000564406 2315 ntTSL 2 BASIC19.89■□□□□ 0.77
XRCC1P18887 SEMA6B-202ENST00000586965 2034 ntAPPRIS ALT2 TSL 1 (best) BASIC19.89■□□□□ 0.77
XRCC1P18887 EML2-220ENST00000589876 2364 ntAPPRIS ALT2 TSL 1 (best) BASIC19.89■□□□□ 0.77
XRCC1P18887 MAPK14-210ENST00000622903 1003 ntTSL 5 BASIC19.89■□□□□ 0.77
XRCC1P18887 PTCD3-220ENST00000627371 210 ntTSL 5 BASIC19.89■□□□□ 0.77
XRCC1P18887 TMEM191A-211ENST00000637163 1067 ntBASIC19.89■□□□□ 0.77
XRCC1P18887 SH3RF3-201ENST00000309415 5803 ntAPPRIS P1 TSL 5 BASIC19.89■□□□□ 0.77
XRCC1P18887 PDE4DIP-214ENST00000479408 2746 ntTSL 5 BASIC19.89■□□□□ 0.77
XRCC1P18887 DOK1-201ENST00000233668 2555 ntAPPRIS P1 TSL 1 (best) BASIC19.89■□□□□ 0.77
XRCC1P18887 FAM120A-201ENST00000277165 5118 ntAPPRIS P1 TSL 1 (best) BASIC19.89■□□□□ 0.77
XRCC1P18887 NGLY1-202ENST00000280700 2473 ntAPPRIS P1 TSL 1 (best) BASIC19.88■□□□□ 0.77
XRCC1P18887 SPON2-201ENST00000290902 1869 ntAPPRIS P1 TSL 1 (best) BASIC19.88■□□□□ 0.77
XRCC1P18887 RFT1-202ENST00000394738 1800 ntTSL 5 BASIC19.88■□□□□ 0.77
XRCC1P18887 ZNF534-201ENST00000301085 1525 ntTSL 2 BASIC19.88■□□□□ 0.77
XRCC1P18887 NFIX-205ENST00000585575 1485 ntAPPRIS P1 TSL 5 BASIC19.88■□□□□ 0.77
XRCC1P18887 LRIG1-201ENST00000273261 5273 ntAPPRIS P1 TSL 1 (best) BASIC19.88■□□□□ 0.77
XRCC1P18887 GDF15-201ENST00000252809 1200 ntAPPRIS P1 TSL 1 (best) BASIC19.88■□□□□ 0.77
XRCC1P18887 CKLF-201ENST00000264001 669 ntAPPRIS P4 TSL 1 (best) BASIC19.88■□□□□ 0.77
XRCC1P18887 FITM1-201ENST00000267426 1194 ntAPPRIS P1 TSL 1 (best) BASIC19.88■□□□□ 0.77
XRCC1P18887 HCFC1R1-202ENST00000354679 765 ntTSL 2 BASIC19.88■□□□□ 0.77
XRCC1P18887 IFI6-202ENST00000361157 841 ntAPPRIS ALT2 TSL 1 (best) BASIC19.88■□□□□ 0.77
XRCC1P18887 CLN6-207ENST00000566347 981 ntTSL 1 (best) BASIC19.88■□□□□ 0.77
XRCC1P18887 JADE2-211ENST00000612830 1251 ntTSL 1 (best) BASIC19.88■□□□□ 0.77
XRCC1P18887 ADD3-AS1-204ENST00000627565 388 ntTSL 3 BASIC19.88■□□□□ 0.77
XRCC1P18887 HLA-B-256ENST00000639848 1089 ntBASIC19.88■□□□□ 0.77
XRCC1P18887 LMLN-204ENST00000420910 2423 ntAPPRIS P2 TSL 1 (best) BASIC19.88■□□□□ 0.77
XRCC1P18887 AGTR1-209ENST00000497524 2359 ntAPPRIS P1 TSL 1 (best) BASIC19.88■□□□□ 0.77
XRCC1P18887 CASP9-210ENST00000546424 4463 ntAPPRIS ALT2 TSL 5 BASIC19.88■□□□□ 0.77
XRCC1P18887 DTX3-201ENST00000337737 2029 ntAPPRIS P3 TSL 2 BASIC19.88■□□□□ 0.77
XRCC1P18887 PLEKHH3-204ENST00000591022 2983 ntAPPRIS P2 TSL 1 (best) BASIC19.88■□□□□ 0.77
XRCC1P18887 APLP2-204ENST00000345598 1862 ntTSL 1 (best) BASIC19.88■□□□□ 0.77
XRCC1P18887 AC007225.1-201ENST00000566331 1836 ntBASIC19.88■□□□□ 0.77
XRCC1P18887 MAP3K15-201ENST00000338883 4012 ntAPPRIS P1 TSL 5 BASIC19.87■□□□□ 0.77
XRCC1P18887 AL512408.1-201ENST00000569378 2000 ntBASIC19.87■□□□□ 0.77
XRCC1P18887 ST8SIA1-204ENST00000404299 1920 ntTSL 1 (best) BASIC19.87■□□□□ 0.77
XRCC1P18887 THAP7-201ENST00000215742 1213 ntAPPRIS P1 TSL 1 (best) BASIC19.87■□□□□ 0.77
XRCC1P18887 PRTN3-201ENST00000234347 1026 ntAPPRIS P1 TSL 1 (best) BASIC19.87■□□□□ 0.77
XRCC1P18887 CNIH4-203ENST00000366858 702 ntTSL 3 BASIC19.87■□□□□ 0.77
XRCC1P18887 AC114730.1-201ENST00000400768 472 ntTSL 4 BASIC19.87■□□□□ 0.77
XRCC1P18887 EP300-AS1-201ENST00000420537 457 ntTSL 3 BASIC19.87■□□□□ 0.77
XRCC1P18887 POU5F1P3-201ENST00000428824 1078 ntBASIC19.87■□□□□ 0.77
XRCC1P18887 CFL1-211ENST00000531407 1062 ntTSL 2 BASIC19.87■□□□□ 0.77
XRCC1P18887 IGFBP6-203ENST00000548547 1177 ntAPPRIS ALT2 TSL 5 BASIC19.87■□□□□ 0.77
XRCC1P18887 C14orf28-204ENST00000557112 1097 ntTSL 5 BASIC19.87■□□□□ 0.77
XRCC1P18887 ASGR1-204ENST00000572879 797 ntTSL 5 BASIC19.87■□□□□ 0.77
XRCC1P18887 AL356652.1-201ENST00000615962 565 ntBASIC19.87■□□□□ 0.77
XRCC1P18887 UBE2Z-201ENST00000360943 3122 ntAPPRIS P1 TSL 1 (best) BASIC19.87■□□□□ 0.77
XRCC1P18887 HSPD1-202ENST00000388968 2455 ntAPPRIS P1 TSL 1 (best) BASIC19.87■□□□□ 0.77
XRCC1P18887 MAPK8IP1-201ENST00000241014 3050 ntAPPRIS P1 TSL 1 (best) BASIC19.87■□□□□ 0.77
XRCC1P18887 AL020996.1-203ENST00000536896 2307 ntBASIC19.87■□□□□ 0.77
XRCC1P18887 DPP10-203ENST00000393147 2758 ntAPPRIS ALT2 TSL 1 (best) BASIC19.87■□□□□ 0.77
XRCC1P18887 FAM213B-204ENST00000419916 2749 ntAPPRIS P3 TSL 1 (best) BASIC19.87■□□□□ 0.77
XRCC1P18887 CHKB-201ENST00000406938 1638 ntAPPRIS P1 TSL 1 (best) BASIC19.87■□□□□ 0.77
XRCC1P18887 LHX9-206ENST00000561173 2144 ntTSL 5 BASIC19.87■□□□□ 0.77
XRCC1P18887 NFIL3-201ENST00000297689 2085 ntAPPRIS P1 TSL 1 (best) BASIC19.87■□□□□ 0.77
XRCC1P18887 TREX2-202ENST00000334497 1982 ntTSL 1 (best) BASIC19.86■□□□□ 0.77
XRCC1P18887 PGPEP1L-202ENST00000535714 1483 ntTSL 2 BASIC19.86■□□□□ 0.77
XRCC1P18887 ECEL1-201ENST00000304546 2865 ntAPPRIS P3 TSL 1 (best) BASIC19.86■□□□□ 0.77
XRCC1P18887 ACBD4-201ENST00000321854 1806 ntAPPRIS P1 TSL 1 (best) BASIC19.86■□□□□ 0.77
XRCC1P18887 STMN3-201ENST00000370053 2255 ntAPPRIS P1 TSL 1 (best) BASIC19.86■□□□□ 0.77
XRCC1P18887 ATP6V0E2-203ENST00000456496 2722 ntTSL 1 (best) BASIC19.86■□□□□ 0.77
XRCC1P18887 ATP6V0E2-213ENST00000615196 2727 ntTSL 1 (best) BASIC19.86■□□□□ 0.77
XRCC1P18887 NHLRC1-201ENST00000340650 2248 ntAPPRIS P1 BASIC19.86■□□□□ 0.77
XRCC1P18887 AL162377.1-201ENST00000618844 1793 ntBASIC19.86■□□□□ 0.77
XRCC1P18887 KATNAL2-208ENST00000592005 1348 ntTSL 1 (best) BASIC19.86■□□□□ 0.77
XRCC1P18887 BCAT2-208ENST00000598162 1329 ntTSL 1 (best) BASIC19.86■□□□□ 0.77
XRCC1P18887 GNS-208ENST00000543646 2164 ntAPPRIS ALT2 TSL 2 BASIC19.86■□□□□ 0.77
XRCC1P18887 AC121338.2-201ENST00000622535 1744 ntBASIC19.86■□□□□ 0.77
XRCC1P18887 SYNE2-201ENST00000341472 1132 ntTSL 1 (best) BASIC19.86■□□□□ 0.77
XRCC1P18887 GAS7-202ENST00000396115 929 ntTSL 5 BASIC19.86■□□□□ 0.77
XRCC1P18887 NCBP2-207ENST00000452404 1133 ntTSL 2 BASIC19.86■□□□□ 0.77
XRCC1P18887 DIMT1-202ENST00000506390 1208 ntTSL 1 (best) BASIC19.86■□□□□ 0.77
Retrieved 100 of 98,524 protein–RNA pairs in 17.4 ms