Protein–RNA interactions for Protein: P0DP91

CSB-PGBD3, Chimeric ERCC6-PGBD3 protein, humanhuman

Predictions only

Length 1,061 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CSB-PGBD3P0DP91 AC087388.1-201ENST00000571370 1112 ntBASIC26.58■■□□□ 1.85
CSB-PGBD3P0DP91 PRR29-205ENST00000579184 1052 ntAPPRIS ALT2 TSL 2 BASIC26.58■■□□□ 1.85
CSB-PGBD3P0DP91 AC011445.1-201ENST00000601911 877 ntTSL 1 (best) BASIC26.58■■□□□ 1.85
CSB-PGBD3P0DP91 CLN6-221ENST00000637494 765 ntTSL 5 BASIC26.58■■□□□ 1.85
CSB-PGBD3P0DP91 Z83844.2-201ENST00000456099 1945 ntTSL 2 BASIC26.58■■□□□ 1.85
CSB-PGBD3P0DP91 TPTEP1-205ENST00000558085 1738 ntTSL 2 BASIC26.58■■□□□ 1.85
CSB-PGBD3P0DP91 FDFT1-201ENST00000220584 2176 ntAPPRIS P1 TSL 1 (best) BASIC26.58■■□□□ 1.85
CSB-PGBD3P0DP91 Z98882.1-201ENST00000622160 2253 ntBASIC26.58■■□□□ 1.84
CSB-PGBD3P0DP91 GPRC5C-204ENST00000392629 1419 ntAPPRIS ALT2 TSL 1 (best) BASIC26.57■■□□□ 1.84
CSB-PGBD3P0DP91 FAM212A-201ENST00000333323 1040 ntAPPRIS P1 TSL 1 (best) BASIC26.57■■□□□ 1.84
CSB-PGBD3P0DP91 AC010203.1-204ENST00000548782 407 ntBASIC26.57■■□□□ 1.84
CSB-PGBD3P0DP91 GCHFR-205ENST00000559932 695 ntTSL 2 BASIC26.57■■□□□ 1.84
CSB-PGBD3P0DP91 MMP25-AS1-204ENST00000572574 794 ntTSL 5 BASIC26.57■■□□□ 1.84
CSB-PGBD3P0DP91 CALM3-208ENST00000596362 1203 ntAPPRIS P1 TSL 2 BASIC26.57■■□□□ 1.84
CSB-PGBD3P0DP91 AL031985.4-201ENST00000642138 673 ntBASIC26.57■■□□□ 1.84
CSB-PGBD3P0DP91 ACSF2-207ENST00000504392 1881 ntTSL 2 BASIC26.57■■□□□ 1.84
CSB-PGBD3P0DP91 TIGD5-201ENST00000504548 5390 ntAPPRIS P1 BASIC26.57■■□□□ 1.84
CSB-PGBD3P0DP91 TRIM67-203ENST00000449018 2166 ntTSL 1 (best) BASIC26.57■■□□□ 1.84
CSB-PGBD3P0DP91 TRMU-202ENST00000381019 1381 ntTSL 1 (best) BASIC26.57■■□□□ 1.84
CSB-PGBD3P0DP91 GTF3A-201ENST00000381140 1383 ntAPPRIS ALT2 TSL 1 (best) BASIC26.57■■□□□ 1.84
CSB-PGBD3P0DP91 HNRNPLL-204ENST00000409328 1908 ntTSL 1 (best) BASIC26.57■■□□□ 1.84
CSB-PGBD3P0DP91 CEMP1-202ENST00000567119 1374 ntAPPRIS P2 BASIC26.57■■□□□ 1.84
CSB-PGBD3P0DP91 MAF1-201ENST00000322428 1677 ntAPPRIS P1 TSL 1 (best) BASIC26.57■■□□□ 1.84
CSB-PGBD3P0DP91 HOXD1-201ENST00000331462 1975 ntAPPRIS P1 TSL 1 (best) BASIC26.57■■□□□ 1.84
CSB-PGBD3P0DP91 LSR-203ENST00000360798 1963 ntTSL 2 BASIC26.57■■□□□ 1.84
CSB-PGBD3P0DP91 WBP2-213ENST00000590221 1745 ntAPPRIS ALT1 TSL 3 BASIC26.56■■□□□ 1.84
CSB-PGBD3P0DP91 CPNE9-205ENST00000613455 1742 ntTSL 5 BASIC26.56■■□□□ 1.84
CSB-PGBD3P0DP91 PARD3-207ENST00000374788 5996 ntAPPRIS ALT1 TSL 1 (best) BASIC26.56■■□□□ 1.84
CSB-PGBD3P0DP91 HRAS-201ENST00000311189 894 ntAPPRIS P1 TSL 1 (best) BASIC26.56■■□□□ 1.84
CSB-PGBD3P0DP91 Z98884.1-201ENST00000451646 830 ntTSL 3 BASIC26.56■■□□□ 1.84
CSB-PGBD3P0DP91 BDKRB1-204ENST00000611804 1085 ntAPPRIS P1 BASIC26.56■■□□□ 1.84
CSB-PGBD3P0DP91 ISOC2-201ENST00000085068 1122 ntTSL 2 BASIC26.56■■□□□ 1.84
CSB-PGBD3P0DP91 OSR2-203ENST00000457907 2126 ntTSL 2 BASIC26.56■■□□□ 1.84
CSB-PGBD3P0DP91 HMOX1-201ENST00000216117 1822 ntAPPRIS P1 TSL 1 (best) BASIC26.55■■□□□ 1.84
CSB-PGBD3P0DP91 BABAM1-208ENST00000598188 1470 ntAPPRIS P3 TSL 1 (best) BASIC26.55■■□□□ 1.84
CSB-PGBD3P0DP91 FAM69B-202ENST00000371692 1668 ntAPPRIS P1 TSL 1 (best) BASIC26.55■■□□□ 1.84
CSB-PGBD3P0DP91 CCM2L-201ENST00000262659 2523 ntAPPRIS P1 TSL 1 (best) BASIC26.55■■□□□ 1.84
CSB-PGBD3P0DP91 THRA-201ENST00000264637 2538 ntTSL 1 (best) BASIC26.55■■□□□ 1.84
CSB-PGBD3P0DP91 PBXIP1-201ENST00000368460 1175 ntAPPRIS ALT2 TSL 3 BASIC26.55■■□□□ 1.84
CSB-PGBD3P0DP91 MCF2L-207ENST00000397024 490 ntTSL 5 BASIC26.55■■□□□ 1.84
CSB-PGBD3P0DP91 LIN28AP1-201ENST00000429574 405 ntBASIC26.55■■□□□ 1.84
CSB-PGBD3P0DP91 ASPHD1-203ENST00000483405 1115 ntAPPRIS ALT2 TSL 3 BASIC26.55■■□□□ 1.84
CSB-PGBD3P0DP91 AC008649.1-201ENST00000589557 516 ntTSL 2 BASIC26.55■■□□□ 1.84
CSB-PGBD3P0DP91 ST8SIA2-201ENST00000268164 5708 ntAPPRIS P1 TSL 1 (best) BASIC26.55■■□□□ 1.84
CSB-PGBD3P0DP91 RBKS-201ENST00000302188 1973 ntAPPRIS P1 TSL 1 (best) BASIC26.55■■□□□ 1.84
CSB-PGBD3P0DP91 NTMT1-209ENST00000611055 1562 ntAPPRIS P1 TSL 3 BASIC26.54■■□□□ 1.84
CSB-PGBD3P0DP91 GSDMD-212ENST00000533063 1800 ntAPPRIS ALT2 TSL 1 (best) BASIC26.54■■□□□ 1.84
CSB-PGBD3P0DP91 NUDT8-201ENST00000301490 809 ntAPPRIS P3 TSL 1 (best) BASIC26.54■■□□□ 1.84
CSB-PGBD3P0DP91 DNTTIP1-201ENST00000372622 1290 ntAPPRIS P1 TSL 1 (best) BASIC26.54■■□□□ 1.84
CSB-PGBD3P0DP91 TMEM88B-201ENST00000378821 492 ntAPPRIS P1 TSL 2 BASIC26.54■■□□□ 1.84
CSB-PGBD3P0DP91 COQ10B-203ENST00000409398 879 ntTSL 3 BASIC26.54■■□□□ 1.84
CSB-PGBD3P0DP91 ATP5G1P1-201ENST00000448724 379 ntBASIC26.54■■□□□ 1.84
CSB-PGBD3P0DP91 GRAMD4P8-201ENST00000605465 1115 ntBASIC26.54■■□□□ 1.84
CSB-PGBD3P0DP91 TMEM234-203ENST00000373593 1411 ntTSL 1 (best) BASIC26.54■■□□□ 1.84
CSB-PGBD3P0DP91 RABEPK-204ENST00000394125 1466 ntAPPRIS P1 TSL 1 (best) BASIC26.54■■□□□ 1.84
CSB-PGBD3P0DP91 PLCG1-AS1-201ENST00000454626 1462 ntTSL 1 (best) BASIC26.54■■□□□ 1.84
CSB-PGBD3P0DP91 PCGF3-208ENST00000470161 1652 ntAPPRIS P1 TSL 1 (best) BASIC26.54■■□□□ 1.84
CSB-PGBD3P0DP91 ZNF821-211ENST00000564134 1748 ntTSL 5 BASIC26.53■■□□□ 1.84
CSB-PGBD3P0DP91 AC005224.2-201ENST00000571192 1885 ntTSL 2 BASIC26.53■■□□□ 1.84
CSB-PGBD3P0DP91 PCSK6-216ENST00000615296 2921 ntTSL 5 BASIC26.53■■□□□ 1.84
CSB-PGBD3P0DP91 MPST-202ENST00000397225 2116 ntAPPRIS P1 TSL 2 BASIC26.53■■□□□ 1.84
CSB-PGBD3P0DP91 WT1-204ENST00000448076 2114 ntAPPRIS ALT2 TSL 2 BASIC26.53■■□□□ 1.84
CSB-PGBD3P0DP91 PDE10A-205ENST00000616273 2118 ntTSL 2 BASIC26.53■■□□□ 1.84
CSB-PGBD3P0DP91 TBL1Y-202ENST00000355162 2376 ntAPPRIS P1 TSL 1 (best) BASIC26.53■■□□□ 1.84
CSB-PGBD3P0DP91 BRWD1-202ENST00000341322 2495 ntTSL 1 (best) BASIC26.53■■□□□ 1.84
CSB-PGBD3P0DP91 ZNF584-202ENST00000322834 1042 ntTSL 2 BASIC26.53■■□□□ 1.84
CSB-PGBD3P0DP91 UBL5-201ENST00000358666 513 ntAPPRIS P1 TSL 1 (best) BASIC26.53■■□□□ 1.84
CSB-PGBD3P0DP91 AL365259.1-203ENST00000451660 707 ntTSL 3 BASIC26.53■■□□□ 1.84
CSB-PGBD3P0DP91 BAALC-AS1-207ENST00000522856 594 ntTSL 3 BASIC26.53■■□□□ 1.84
CSB-PGBD3P0DP91 ZNF599-203ENST00000588760 948 ntTSL 2 BASIC26.53■■□□□ 1.84
CSB-PGBD3P0DP91 NCF1-201ENST00000289473 1396 ntAPPRIS P1 TSL 1 (best) BASIC26.53■■□□□ 1.84
CSB-PGBD3P0DP91 CSF1-203ENST00000369801 1364 ntTSL 1 (best) BASIC26.53■■□□□ 1.84
CSB-PGBD3P0DP91 GPAA1-202ENST00000361036 1840 ntTSL 1 (best) BASIC26.53■■□□□ 1.84
CSB-PGBD3P0DP91 CFAP46-201ENST00000368585 1825 ntAPPRIS ALT2 TSL 2 BASIC26.53■■□□□ 1.84
CSB-PGBD3P0DP91 OTOP1-201ENST00000296358 1864 ntAPPRIS P1 TSL 1 (best) BASIC26.53■■□□□ 1.84
CSB-PGBD3P0DP91 CALY-201ENST00000252939 2271 ntAPPRIS P1 TSL 1 (best) BASIC26.53■■□□□ 1.84
CSB-PGBD3P0DP91 EGR4-202ENST00000545030 2372 ntAPPRIS P2 TSL 1 (best) BASIC26.53■■□□□ 1.84
CSB-PGBD3P0DP91 SOX15-201ENST00000250055 1396 ntAPPRIS P1 TSL 1 (best) BASIC26.52■■□□□ 1.84
CSB-PGBD3P0DP91 POMZP3-201ENST00000275569 1259 ntTSL 2 BASIC26.52■■□□□ 1.84
CSB-PGBD3P0DP91 EDARADD-201ENST00000334232 858 ntTSL 1 (best) BASIC26.52■■□□□ 1.84
CSB-PGBD3P0DP91 SLC18A3-201ENST00000374115 2420 ntAPPRIS P1 BASIC26.52■■□□□ 1.84
CSB-PGBD3P0DP91 ZNF771-202ENST00000434417 1454 ntAPPRIS P1 TSL 2 BASIC26.52■■□□□ 1.84
CSB-PGBD3P0DP91 AL513320.1-201ENST00000435049 622 ntTSL 3 BASIC26.52■■□□□ 1.84
CSB-PGBD3P0DP91 LY6E-214ENST00000522971 857 ntAPPRIS P2 TSL 2 BASIC26.52■■□□□ 1.84
CSB-PGBD3P0DP91 C2orf69P3-201ENST00000565542 1120 ntBASIC26.52■■□□□ 1.84
CSB-PGBD3P0DP91 FSCN1P1-201ENST00000568912 1481 ntBASIC26.52■■□□□ 1.84
CSB-PGBD3P0DP91 CIRBP-217ENST00000588230 1013 ntTSL 5 BASIC26.52■■□□□ 1.84
CSB-PGBD3P0DP91 MAL2-204ENST00000614891 2818 ntAPPRIS P1 TSL 1 (best) BASIC26.52■■□□□ 1.84
CSB-PGBD3P0DP91 EXOSC6-201ENST00000435634 5153 ntAPPRIS P1 BASIC26.52■■□□□ 1.84
CSB-PGBD3P0DP91 AL024507.2-201ENST00000606070 2574 ntBASIC26.52■■□□□ 1.84
CSB-PGBD3P0DP91 PPP4R2-201ENST00000356692 4984 ntAPPRIS P1 TSL 1 (best) BASIC26.51■■□□□ 1.84
CSB-PGBD3P0DP91 UBA5-211ENST00000493720 2058 ntTSL 5 BASIC26.51■■□□□ 1.83
CSB-PGBD3P0DP91 ACSF2-203ENST00000502667 2098 ntTSL 2 BASIC26.51■■□□□ 1.83
CSB-PGBD3P0DP91 MATK-215ENST00000619596 1740 ntAPPRIS P4 TSL 2 BASIC26.51■■□□□ 1.83
CSB-PGBD3P0DP91 HIRA-202ENST00000340170 3395 ntTSL 1 (best) BASIC26.51■■□□□ 1.83
CSB-PGBD3P0DP91 AP006587.1-201ENST00000534129 1502 ntBASIC26.51■■□□□ 1.83
CSB-PGBD3P0DP91 BACE1-209ENST00000513780 1465 ntTSL 1 (best) BASIC26.51■■□□□ 1.83
CSB-PGBD3P0DP91 EMC6-201ENST00000248378 653 ntAPPRIS P1 TSL 1 (best) BASIC26.51■■□□□ 1.83
CSB-PGBD3P0DP91 PMF1-BGLAP-202ENST00000368276 852 ntTSL 3 BASIC26.51■■□□□ 1.83
CSB-PGBD3P0DP91 SNCB-202ENST00000393693 1234 ntAPPRIS P1 TSL 1 (best) BASIC26.51■■□□□ 1.83
Retrieved 100 of 98,524 protein–RNA pairs in 21.4 ms