Protein–RNA interactions for Protein: P0CW19

LIMS3, LIM and senescent cell antigen-like-containing domain protein 3, humanhuman

Predictions only

Length 117 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LIMS3P0CW19 MFSD10-201ENST00000329687 2173 ntAPPRIS P1 TSL 1 (best) BASIC17.76■□□□□ 0.43
LIMS3P0CW19 BID-205ENST00000399774 2167 ntAPPRIS P1 TSL 1 (best) BASIC17.76■□□□□ 0.43
LIMS3P0CW19 ARNTL-203ENST00000403290 2746 ntAPPRIS ALT1 TSL 1 (best) BASIC17.76■□□□□ 0.43
LIMS3P0CW19 PHLDA3-201ENST00000367309 896 ntAPPRIS P1 TSL 5 BASIC17.76■□□□□ 0.43
LIMS3P0CW19 LIN7B-202ENST00000391864 582 ntTSL 3 BASIC17.76■□□□□ 0.43
LIMS3P0CW19 SAPCD2P1-201ENST00000395413 1184 ntBASIC17.76■□□□□ 0.43
LIMS3P0CW19 FAXDC2-211ENST00000520968 558 ntTSL 4 BASIC17.76■□□□□ 0.43
LIMS3P0CW19 AC145207.2-202ENST00000576554 565 ntTSL 5 BASIC17.76■□□□□ 0.43
LIMS3P0CW19 AP001160.3-201ENST00000601484 763 ntBASIC17.76■□□□□ 0.43
LIMS3P0CW19 AL031432.3-201ENST00000607698 485 ntBASIC17.76■□□□□ 0.43
LIMS3P0CW19 EDN3-204ENST00000371028 2397 ntAPPRIS P4 TSL 5 BASIC17.76■□□□□ 0.43
LIMS3P0CW19 MORC4-201ENST00000255495 2940 ntAPPRIS ALT2 TSL 1 (best) BASIC17.76■□□□□ 0.43
LIMS3P0CW19 PLLP-201ENST00000219207 1512 ntAPPRIS P1 TSL 1 (best) BASIC17.76■□□□□ 0.43
LIMS3P0CW19 IRF7-203ENST00000397566 2051 ntAPPRIS P4 TSL 1 (best) BASIC17.76■□□□□ 0.43
LIMS3P0CW19 NEFHP1-201ENST00000412845 2629 ntBASIC17.76■□□□□ 0.43
LIMS3P0CW19 LRRC75A-203ENST00000470794 1390 ntAPPRIS ALT2 TSL 1 (best) BASIC17.76■□□□□ 0.43
LIMS3P0CW19 ST8SIA2-201ENST00000268164 5708 ntAPPRIS P1 TSL 1 (best) BASIC17.76■□□□□ 0.43
LIMS3P0CW19 AL032819.2-201ENST00000624543 2162 ntBASIC17.76■□□□□ 0.43
LIMS3P0CW19 MIB2-231ENST00000518681 3116 ntTSL 1 (best) BASIC17.76■□□□□ 0.43
LIMS3P0CW19 SUDS3-204ENST00000543473 4897 ntAPPRIS P1 TSL 1 (best) BASIC17.76■□□□□ 0.43
LIMS3P0CW19 TMEM250-201ENST00000418388 2823 ntAPPRIS P1 TSL 1 (best) BASIC17.76■□□□□ 0.43
LIMS3P0CW19 RASSF1-202ENST00000357043 1864 ntAPPRIS P3 TSL 1 (best) BASIC17.75■□□□□ 0.43
LIMS3P0CW19 GCGR-202ENST00000570996 1872 ntAPPRIS ALT2 TSL 2 BASIC17.75■□□□□ 0.43
LIMS3P0CW19 SLC12A4-202ENST00000422611 4670 ntTSL 2 BASIC17.75■□□□□ 0.43
LIMS3P0CW19 ATP11C-203ENST00000370557 6924 ntAPPRIS ALT2 TSL 5 BASIC17.75■□□□□ 0.43
LIMS3P0CW19 OTUD1-201ENST00000376495 2933 ntAPPRIS P1 BASIC17.75■□□□□ 0.43
LIMS3P0CW19 CELF6-202ENST00000395258 1741 ntTSL 5 BASIC17.75■□□□□ 0.43
LIMS3P0CW19 MAPK9-208ENST00000455781 4336 ntAPPRIS ALT1 TSL 2 BASIC17.75■□□□□ 0.43
LIMS3P0CW19 ISOC1-201ENST00000173527 1940 ntAPPRIS P1 TSL 1 (best) BASIC17.75■□□□□ 0.43
LIMS3P0CW19 KLHL21-206ENST00000610898 1945 ntTSL 1 (best) BASIC17.75■□□□□ 0.43
LIMS3P0CW19 PCCA-201ENST00000376279 2418 ntTSL 2 BASIC17.75■□□□□ 0.43
LIMS3P0CW19 ODF3B-201ENST00000329363 970 ntAPPRIS P1 TSL 5 BASIC17.75■□□□□ 0.43
LIMS3P0CW19 LINC01167-201ENST00000423232 604 ntTSL 3 BASIC17.75■□□□□ 0.43
LIMS3P0CW19 AC105265.2-201ENST00000467189 838 ntBASIC17.75■□□□□ 0.43
LIMS3P0CW19 AC021660.2-201ENST00000502999 388 ntTSL 3 BASIC17.75■□□□□ 0.43
LIMS3P0CW19 AC093817.1-201ENST00000507296 812 ntTSL 3 BASIC17.75■□□□□ 0.43
LIMS3P0CW19 HTATIP2-208ENST00000532505 595 ntTSL 2 BASIC17.75■□□□□ 0.43
LIMS3P0CW19 IGFALS-203ENST00000568221 730 ntTSL 4 BASIC17.75■□□□□ 0.43
LIMS3P0CW19 CCDC92B-201ENST00000575506 885 ntBASIC17.75■□□□□ 0.43
LIMS3P0CW19 PLEKHJ1-213ENST00000591099 1092 ntTSL 2 BASIC17.75■□□□□ 0.43
LIMS3P0CW19 ABHD1-207ENST00000621324 1078 ntTSL 5 BASIC17.75■□□□□ 0.43
LIMS3P0CW19 PDE9A-212ENST00000398234 1783 ntTSL 1 (best) BASIC17.75■□□□□ 0.43
LIMS3P0CW19 EPHA10-202ENST00000373048 5425 ntAPPRIS P2 TSL 5 BASIC17.75■□□□□ 0.43
LIMS3P0CW19 MTFP1-201ENST00000266263 1370 ntAPPRIS P1 TSL 1 (best) BASIC17.75■□□□□ 0.43
LIMS3P0CW19 CCDC34-201ENST00000317945 2109 ntAPPRIS P3 TSL 1 (best) BASIC17.75■□□□□ 0.43
LIMS3P0CW19 CERKL-204ENST00000374970 1392 ntTSL 1 (best) BASIC17.75■□□□□ 0.43
LIMS3P0CW19 AMZ1-202ENST00000407112 1862 ntTSL 2 BASIC17.75■□□□□ 0.43
LIMS3P0CW19 ARL6IP4-204ENST00000392435 1339 ntAPPRIS ALT2 TSL 1 (best) BASIC17.74■□□□□ 0.43
LIMS3P0CW19 ACY1-207ENST00000476854 1319 ntTSL 3 BASIC17.74■□□□□ 0.43
LIMS3P0CW19 CDIPT-210ENST00000570016 1346 ntAPPRIS P1 TSL 5 BASIC17.74■□□□□ 0.43
LIMS3P0CW19 BIRC2-206ENST00000530675 1927 ntTSL 2 BASIC17.74■□□□□ 0.43
LIMS3P0CW19 PRDM1-202ENST00000369091 2612 ntTSL 1 (best) BASIC17.74■□□□□ 0.43
LIMS3P0CW19 GGT2-201ENST00000401924 2366 ntAPPRIS P1 TSL 5 BASIC17.74■□□□□ 0.43
LIMS3P0CW19 CTBP2-202ENST00000334808 2130 ntTSL 1 (best) BASIC17.74■□□□□ 0.43
LIMS3P0CW19 DIAPH1-203ENST00000389057 5762 ntAPPRIS ALT2 TSL 5 BASIC17.74■□□□□ 0.43
LIMS3P0CW19 TNFRSF1A-201ENST00000162749 2223 ntAPPRIS P1 TSL 1 (best) BASIC17.74■□□□□ 0.43
LIMS3P0CW19 LRWD1-201ENST00000292616 2215 ntAPPRIS P1 TSL 1 (best) BASIC17.74■□□□□ 0.43
LIMS3P0CW19 FNDC3B-204ENST00000421757 946 ntTSL 1 (best) BASIC17.74■□□□□ 0.43
LIMS3P0CW19 ATPIF1-204ENST00000497986 599 ntTSL 2 BASIC17.74■□□□□ 0.43
LIMS3P0CW19 AL137779.2-201ENST00000554859 448 ntTSL 2 BASIC17.74■□□□□ 0.43
LIMS3P0CW19 GLS-201ENST00000320717 4834 ntAPPRIS P3 TSL 1 (best) BASIC17.74■□□□□ 0.43
LIMS3P0CW19 CASP16P-202ENST00000575497 2161 ntTSL 2 BASIC17.74■□□□□ 0.43
LIMS3P0CW19 SKOR2-202ENST00000425639 3899 ntAPPRIS ALT2 TSL 5 BASIC17.74■□□□□ 0.43
LIMS3P0CW19 KRT6C-201ENST00000252250 2289 ntAPPRIS P1 TSL 1 (best) BASIC17.74■□□□□ 0.43
LIMS3P0CW19 KRT6B-201ENST00000252252 2282 ntAPPRIS P1 TSL 1 (best) BASIC17.74■□□□□ 0.43
LIMS3P0CW19 PLCB2-204ENST00000557821 4517 ntAPPRIS ALT1 TSL 1 (best) BASIC17.74■□□□□ 0.43
LIMS3P0CW19 BLACE-201ENST00000378120 2456 ntAPPRIS P1 TSL 1 (best) BASIC17.74■□□□□ 0.43
LIMS3P0CW19 MAPT-210ENST00000535772 5718 ntTSL 5 BASIC17.74■□□□□ 0.43
LIMS3P0CW19 HOXB9-201ENST00000311177 2581 ntAPPRIS P1 TSL 1 (best) BASIC17.74■□□□□ 0.43
LIMS3P0CW19 SMYD2-201ENST00000366957 1671 ntAPPRIS P1 TSL 1 (best) BASIC17.74■□□□□ 0.43
LIMS3P0CW19 FSCN2-202ENST00000417245 1665 ntAPPRIS P1 TSL 1 (best) BASIC17.74■□□□□ 0.43
LIMS3P0CW19 PTAR1-205ENST00000472967 1689 ntTSL 2 BASIC17.74■□□□□ 0.43
LIMS3P0CW19 CENPS-CORT-204ENST00000602296 1326 ntTSL 3 BASIC17.73■□□□□ 0.43
LIMS3P0CW19 RNF146-213ENST00000610153 2070 ntAPPRIS ALT1 TSL 2 BASIC17.73■□□□□ 0.43
LIMS3P0CW19 ADA-201ENST00000372874 1539 ntAPPRIS P1 TSL 1 (best) BASIC17.73■□□□□ 0.43
LIMS3P0CW19 MORN1-202ENST00000378529 1500 ntAPPRIS ALT2 TSL 1 (best) BASIC17.73■□□□□ 0.43
LIMS3P0CW19 ABCB9-202ENST00000344275 2394 ntTSL 1 (best) BASIC17.73■□□□□ 0.43
LIMS3P0CW19 CITED2-201ENST00000367651 2354 ntAPPRIS P1 TSL 1 (best) BASIC17.73■□□□□ 0.43
LIMS3P0CW19 STK25-205ENST00000405883 1904 ntTSL 2 BASIC17.73■□□□□ 0.43
LIMS3P0CW19 COX5B-201ENST00000258424 712 ntAPPRIS P1 TSL 1 (best) BASIC17.73■□□□□ 0.43
LIMS3P0CW19 IFRD2-202ENST00000417626 2109 ntTSL 1 (best) BASIC17.73■□□□□ 0.43
LIMS3P0CW19 AC092468.1-201ENST00000491321 562 ntTSL 4 BASIC17.73■□□□□ 0.43
LIMS3P0CW19 KRT18P20-201ENST00000548986 1279 ntBASIC17.73■□□□□ 0.43
LIMS3P0CW19 ST3GAL4-205ENST00000449406 1669 ntTSL 5 BASIC17.73■□□□□ 0.43
LIMS3P0CW19 CAMKV-205ENST00000467248 1688 ntTSL 2 BASIC17.73■□□□□ 0.43
LIMS3P0CW19 SLC1A6-202ENST00000430939 1794 ntTSL 2 BASIC17.73■□□□□ 0.43
LIMS3P0CW19 ADGRD2-201ENST00000334810 3244 ntAPPRIS P1 TSL 5 BASIC17.73■□□□□ 0.43
LIMS3P0CW19 GJB6-204ENST00000400066 1927 ntAPPRIS P1 TSL 1 (best) BASIC17.72■□□□□ 0.43
LIMS3P0CW19 PITX2-203ENST00000355080 2100 ntTSL 1 (best) BASIC17.72■□□□□ 0.43
LIMS3P0CW19 AKNA-205ENST00000374079 2138 ntTSL 1 (best) BASIC17.72■□□□□ 0.43
LIMS3P0CW19 RAB7A-201ENST00000265062 2244 ntAPPRIS P1 TSL 1 (best) BASIC17.72■□□□□ 0.43
LIMS3P0CW19 CBX1-202ENST00000393408 2422 ntAPPRIS P1 TSL 1 (best) BASIC17.72■□□□□ 0.43
LIMS3P0CW19 MEN1-206ENST00000377321 2614 ntTSL 1 (best) BASIC17.72■□□□□ 0.43
LIMS3P0CW19 FENDRR-203ENST00000595886 3095 ntTSL 2 BASIC17.72■□□□□ 0.43
LIMS3P0CW19 TBC1D10A-204ENST00000403477 1950 ntAPPRIS ALT2 TSL 2 BASIC17.72■□□□□ 0.43
LIMS3P0CW19 KCNK6-201ENST00000263372 5722 ntAPPRIS P1 TSL 1 (best) BASIC17.72■□□□□ 0.43
LIMS3P0CW19 RGMA-208ENST00000556658 1889 ntTSL 1 (best) BASIC17.72■□□□□ 0.43
LIMS3P0CW19 YBX3-201ENST00000228251 1796 ntAPPRIS P3 TSL 1 (best) BASIC17.72■□□□□ 0.43
LIMS3P0CW19 MEF2B-201ENST00000409224 1683 ntTSL 2 BASIC17.72■□□□□ 0.43
LIMS3P0CW19 PHF10-202ENST00000366780 1589 ntAPPRIS ALT2 TSL 5 BASIC17.72■□□□□ 0.43
Retrieved 100 of 98,524 protein–RNA pairs in 444.4 ms