Protein–RNA interactions for Protein: O95197

RTN3, Reticulon-3, humanhuman

Predicted RBP Predictions only

Length 1,032 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RTN3O95197 WDR25-201ENST00000335290 2123 ntAPPRIS P1 TSL 1 (best) BASIC21.06■□□□□ 0.96
RTN3O95197 LINC00708-201ENST00000428165 916 ntTSL 1 (best) BASIC21.06■□□□□ 0.96
RTN3O95197 LINC00969-218ENST00000452844 583 ntTSL 3 BASIC21.06■□□□□ 0.96
RTN3O95197 LINC00969-221ENST00000457233 1279 ntTSL 1 (best) BASIC21.06■□□□□ 0.96
RTN3O95197 THEM4-205ENST00000489410 643 ntTSL 2 BASIC21.06■□□□□ 0.96
RTN3O95197 RPPH1-201ENST00000516869 333 ntBASIC21.06■□□□□ 0.96
RTN3O95197 RNF121-214ENST00000533380 870 ntTSL 3 BASIC21.06■□□□□ 0.96
RTN3O95197 RPH3AL-203ENST00000536489 1235 ntTSL 2 BASIC21.06■□□□□ 0.96
RTN3O95197 ICAM2-207ENST00000579687 1154 ntAPPRIS P1 TSL 3 BASIC21.06■□□□□ 0.96
RTN3O95197 AL359736.2-201ENST00000621992 437 ntBASIC21.06■□□□□ 0.96
RTN3O95197 SLC35A2-213ENST00000635015 1008 ntTSL 2 BASIC21.06■□□□□ 0.96
RTN3O95197 CXXC5-201ENST00000302517 2658 ntAPPRIS P1 TSL 1 (best) BASIC21.06■□□□□ 0.96
RTN3O95197 DBNDD1-201ENST00000002501 2079 ntAPPRIS P1 TSL 2 BASIC21.06■□□□□ 0.96
RTN3O95197 SLC35E4-202ENST00000406566 2081 ntTSL 1 (best) BASIC21.06■□□□□ 0.96
RTN3O95197 CPNE7-202ENST00000319518 2409 ntAPPRIS P1 TSL 1 (best) BASIC21.06■□□□□ 0.96
RTN3O95197 CERKL-205ENST00000409440 2425 ntTSL 2 BASIC21.06■□□□□ 0.96
RTN3O95197 SMTNL2-202ENST00000389313 2280 ntAPPRIS P1 TSL 1 (best) BASIC21.06■□□□□ 0.96
RTN3O95197 FBXO17-201ENST00000292852 2386 ntAPPRIS P1 TSL 1 (best) BASIC21.05■□□□□ 0.96
RTN3O95197 EEF1D-225ENST00000529272 1311 ntAPPRIS ALT2 TSL 2 BASIC21.05■□□□□ 0.96
RTN3O95197 SGTA-201ENST00000221566 2330 ntAPPRIS P1 TSL 1 (best) BASIC21.05■□□□□ 0.96
RTN3O95197 FA2H-201ENST00000219368 2424 ntAPPRIS P1 TSL 1 (best) BASIC21.05■□□□□ 0.96
RTN3O95197 TEAD2-201ENST00000311227 2164 ntAPPRIS P3 TSL 1 (best) BASIC21.05■□□□□ 0.96
RTN3O95197 BAALC-201ENST00000297574 801 ntTSL 3 BASIC21.05■□□□□ 0.96
RTN3O95197 H3F3A-204ENST00000366816 799 ntAPPRIS P1 TSL 3 BASIC21.05■□□□□ 0.96
RTN3O95197 POLR2J-202ENST00000393794 784 ntTSL 1 (best) BASIC21.05■□□□□ 0.96
RTN3O95197 AC007040.1-201ENST00000416229 477 ntTSL 3 BASIC21.05■□□□□ 0.96
RTN3O95197 TSPAN14-209ENST00000481124 808 ntTSL 2 BASIC21.05■□□□□ 0.96
RTN3O95197 MAX-217ENST00000557277 728 ntTSL 3 BASIC21.05■□□□□ 0.96
RTN3O95197 AC007493.2-201ENST00000568427 478 ntTSL 3 BASIC21.05■□□□□ 0.96
RTN3O95197 LINC00654-202ENST00000589201 579 ntTSL 3 BASIC21.05■□□□□ 0.96
RTN3O95197 MTDHP1-201ENST00000605323 784 ntBASIC21.05■□□□□ 0.96
RTN3O95197 HSD17B12-213ENST00000637401 866 ntTSL 4 BASIC21.05■□□□□ 0.96
RTN3O95197 AP006294.2-201ENST00000641667 209 ntBASIC21.05■□□□□ 0.96
RTN3O95197 HCN2-201ENST00000251287 3408 ntAPPRIS P1 TSL 1 (best) BASIC21.05■□□□□ 0.96
RTN3O95197 ASPHD1-201ENST00000308748 1584 ntAPPRIS P2 TSL 1 (best) BASIC21.05■□□□□ 0.96
RTN3O95197 NDUFAF6-203ENST00000396124 1798 ntAPPRIS P1 TSL 2 BASIC21.05■□□□□ 0.96
RTN3O95197 KDM3B-201ENST00000314358 6813 ntAPPRIS P1 TSL 1 (best) BASIC21.04■□□□□ 0.96
RTN3O95197 SNCA-203ENST00000394986 1420 ntAPPRIS P1 TSL 1 (best) BASIC21.04■□□□□ 0.96
RTN3O95197 EEF1D-204ENST00000423316 2378 ntAPPRIS P4 TSL 5 BASIC21.04■□□□□ 0.96
RTN3O95197 KRT8P17-201ENST00000453110 1448 ntBASIC21.04■□□□□ 0.96
RTN3O95197 FNIP1-204ENST00000511848 1720 ntTSL 1 (best) BASIC21.04■□□□□ 0.96
RTN3O95197 PHF20L1-214ENST00000485595 1810 ntTSL 2 BASIC21.04■□□□□ 0.96
RTN3O95197 HFE2-202ENST00000357836 2123 ntTSL 1 (best) BASIC21.04■□□□□ 0.96
RTN3O95197 ARSB-201ENST00000264914 5327 ntAPPRIS P1 TSL 1 (best) BASIC21.04■□□□□ 0.96
RTN3O95197 FAM193B-217ENST00000514747 2913 ntAPPRIS P1 TSL 5 BASIC21.04■□□□□ 0.96
RTN3O95197 MCAT-202ENST00000327555 1134 ntTSL 1 (best) BASIC21.04■□□□□ 0.96
RTN3O95197 MTFP1-202ENST00000355143 891 ntTSL 2 BASIC21.04■□□□□ 0.96
RTN3O95197 MTHFD1L-201ENST00000367307 1049 ntTSL 1 (best) BASIC21.04■□□□□ 0.96
RTN3O95197 F8A2-201ENST00000369505 1116 ntAPPRIS P1 BASIC21.04■□□□□ 0.96
RTN3O95197 NT5C3B-203ENST00000435506 975 ntAPPRIS P1 TSL 5 BASIC21.04■□□□□ 0.96
RTN3O95197 AL162258.1-201ENST00000497086 753 ntTSL 2 BASIC21.04■□□□□ 0.96
RTN3O95197 EPHA5-AS1-202ENST00000509473 1177 ntTSL 1 (best) BASIC21.04■□□□□ 0.96
RTN3O95197 FAM197Y4-202ENST00000622692 608 ntBASIC21.04■□□□□ 0.96
RTN3O95197 VEGFB-201ENST00000309422 1380 ntAPPRIS P3 TSL 1 (best) BASIC21.04■□□□□ 0.96
RTN3O95197 HIGD1A-201ENST00000321331 1373 ntAPPRIS P1 TSL 1 (best) BASIC21.04■□□□□ 0.96
RTN3O95197 ING1-201ENST00000333219 5119 ntAPPRIS P1 TSL 1 (best) BASIC21.04■□□□□ 0.96
RTN3O95197 H19-201ENST00000411754 1788 ntTSL 5 BASIC21.04■□□□□ 0.96
RTN3O95197 RTP5-201ENST00000343216 2296 ntAPPRIS P1 TSL 1 (best) BASIC21.04■□□□□ 0.96
RTN3O95197 MAG-201ENST00000361922 2426 ntAPPRIS ALT2 TSL 1 (best) BASIC21.04■□□□□ 0.96
RTN3O95197 WDR4-202ENST00000398208 2122 ntAPPRIS P1 TSL 1 (best) BASIC21.04■□□□□ 0.96
RTN3O95197 ZNF821-202ENST00000425432 2000 ntAPPRIS P1 TSL 5 BASIC21.04■□□□□ 0.96
RTN3O95197 DBNDD2-203ENST00000372710 1417 ntTSL 1 (best) BASIC21.04■□□□□ 0.96
RTN3O95197 ZDHHC24-203ENST00000526986 1424 ntTSL 1 (best) BASIC21.04■□□□□ 0.96
RTN3O95197 CDKN2B-AS1-217ENST00000585267 1337 ntTSL 1 (best) BASIC21.04■□□□□ 0.96
RTN3O95197 ZNF579-201ENST00000325421 2899 ntAPPRIS P1 TSL 2 BASIC21.03■□□□□ 0.96
RTN3O95197 DPP3P2-201ENST00000416030 1696 ntBASIC21.03■□□□□ 0.96
RTN3O95197 ABHD14A-201ENST00000273596 1062 ntAPPRIS P1 TSL 1 (best) BASIC21.03■□□□□ 0.96
RTN3O95197 CLTA-202ENST00000345519 1073 ntAPPRIS ALT1 TSL 1 (best) BASIC21.03■□□□□ 0.96
RTN3O95197 DNTTIP1-201ENST00000372622 1290 ntAPPRIS P1 TSL 1 (best) BASIC21.03■□□□□ 0.96
RTN3O95197 DDR1-228ENST00000376575 732 ntTSL 1 (best) BASIC21.03■□□□□ 0.96
RTN3O95197 UBE2SP1-201ENST00000450587 669 ntBASIC21.03■□□□□ 0.96
RTN3O95197 THAP6-213ENST00000514480 1161 ntAPPRIS P3 TSL 1 (best) BASIC21.03■□□□□ 0.96
RTN3O95197 ZNF668-209ENST00000539836 2469 ntTSL 5 BASIC21.03■□□□□ 0.96
RTN3O95197 ENOSF1-201ENST00000251101 1867 ntAPPRIS P1 TSL 1 (best) BASIC21.03■□□□□ 0.96
RTN3O95197 MTMR9LP-202ENST00000423995 1878 ntTSL 2 BASIC21.03■□□□□ 0.96
RTN3O95197 CPNE9-202ENST00000383831 1751 ntTSL 5 BASIC21.02■□□□□ 0.96
RTN3O95197 DENND4B-201ENST00000361217 5706 ntAPPRIS P2 TSL 1 (best) BASIC21.02■□□□□ 0.96
RTN3O95197 FOXI1-202ENST00000449804 2011 ntTSL 1 (best) BASIC21.02■□□□□ 0.96
RTN3O95197 P2RY11-201ENST00000321826 1943 ntAPPRIS P1 TSL 1 (best) BASIC21.02■□□□□ 0.96
RTN3O95197 LBX2-203ENST00000460508 1452 ntTSL 1 (best) BASIC21.02■□□□□ 0.96
RTN3O95197 CMTM7-202ENST00000349718 1214 ntTSL 1 (best) BASIC21.02■□□□□ 0.96
RTN3O95197 NDUFS6-202ENST00000469176 550 ntTSL 2 BASIC21.02■□□□□ 0.96
RTN3O95197 DET1-205ENST00000558413 583 ntTSL 4 BASIC21.02■□□□□ 0.96
RTN3O95197 BCL2L10-202ENST00000561198 825 ntAPPRIS ALT2 TSL 1 (best) BASIC21.02■□□□□ 0.96
RTN3O95197 HAGHL-213ENST00000564545 663 ntTSL 3 BASIC21.02■□□□□ 0.96
RTN3O95197 DCAKD-205ENST00000588499 990 ntAPPRIS P1 TSL 2 BASIC21.02■□□□□ 0.96
RTN3O95197 GTF2IRD2B-206ENST00000614064 573 ntTSL 1 (best) BASIC21.02■□□□□ 0.96
RTN3O95197 ARPP19-201ENST00000249822 5301 ntAPPRIS P1 TSL 1 (best) BASIC21.02■□□□□ 0.96
RTN3O95197 MAP2K5-203ENST00000354498 1783 ntTSL 2 BASIC21.02■□□□□ 0.96
RTN3O95197 MZF1-203ENST00000594234 2385 ntTSL 1 (best) BASIC21.02■□□□□ 0.96
RTN3O95197 PAQR6-213ENST00000612424 2037 ntTSL 2 BASIC21.02■□□□□ 0.96
RTN3O95197 MRPL4-202ENST00000307422 1320 ntAPPRIS P2 TSL 5 BASIC21.02■□□□□ 0.95
RTN3O95197 CEACAM3-202ENST00000357396 1316 ntAPPRIS P3 TSL 1 (best) BASIC21.02■□□□□ 0.95
RTN3O95197 TRIM73-202ENST00000430211 1321 ntAPPRIS ALT2 TSL 2 BASIC21.02■□□□□ 0.95
RTN3O95197 BID-215ENST00000622694 2199 ntAPPRIS P1 TSL 1 (best) BASIC21.02■□□□□ 0.95
RTN3O95197 MARK2-202ENST00000361128 3004 ntAPPRIS ALT2 TSL 1 (best) BASIC21.02■□□□□ 0.95
RTN3O95197 WASH6P-203ENST00000460206 1826 ntTSL 5 BASIC21.01■□□□□ 0.95
RTN3O95197 CIRBP-225ENST00000589710 1835 ntTSL 2 BASIC21.01■□□□□ 0.95
RTN3O95197 ST8SIA2-201ENST00000268164 5708 ntAPPRIS P1 TSL 1 (best) BASIC21.01■□□□□ 0.95
RTN3O95197 IKZF1-209ENST00000438033 1748 ntTSL 2 BASIC21.01■□□□□ 0.95
Retrieved 100 of 98,524 protein–RNA pairs in 19.8 ms