Protein–RNA interactions for Protein: O75131

CPNE3, Copine-3, humanhuman

Known RBP Predictions only

Length 537 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CPNE3O75131 SMG1P1-207ENST00000446662 852 ntTSL 5 BASIC19.16■□□□□ 0.66
CPNE3O75131 LINC00969-218ENST00000452844 583 ntTSL 3 BASIC19.16■□□□□ 0.66
CPNE3O75131 LINC00969-221ENST00000457233 1279 ntTSL 1 (best) BASIC19.16■□□□□ 0.66
CPNE3O75131 THAP6-213ENST00000514480 1161 ntAPPRIS P3 TSL 1 (best) BASIC19.16■□□□□ 0.66
CPNE3O75131 CD7-207ENST00000584284 2021 ntAPPRIS ALT2 TSL 1 (best) BASIC19.16■□□□□ 0.66
CPNE3O75131 MAML1-201ENST00000292599 5723 ntAPPRIS P1 TSL 1 (best) BASIC19.16■□□□□ 0.66
CPNE3O75131 SUMF2-204ENST00000395436 1683 ntAPPRIS ALT2 TSL 1 (best) BASIC19.16■□□□□ 0.66
CPNE3O75131 GORASP1-220ENST00000479927 1345 ntTSL 2 BASIC19.16■□□□□ 0.66
CPNE3O75131 FNIP1-204ENST00000511848 1720 ntTSL 1 (best) BASIC19.16■□□□□ 0.66
CPNE3O75131 ZNF302-215ENST00000627982 1723 ntAPPRIS ALT2 TSL 5 BASIC19.16■□□□□ 0.66
CPNE3O75131 WIPF1-205ENST00000409415 1772 ntTSL 1 (best) BASIC19.16■□□□□ 0.66
CPNE3O75131 AF106564.1-201ENST00000607058 2553 ntBASIC19.16■□□□□ 0.66
CPNE3O75131 CHST8-202ENST00000434302 2225 ntAPPRIS P1 TSL 2 BASIC19.16■□□□□ 0.66
CPNE3O75131 UXS1-203ENST00000409501 1839 ntAPPRIS P3 TSL 1 (best) BASIC19.16■□□□□ 0.66
CPNE3O75131 KRT8P36-201ENST00000489121 1440 ntBASIC19.16■□□□□ 0.66
CPNE3O75131 CACTIN-202ENST00000248420 2671 ntAPPRIS P1 TSL 5 BASIC19.16■□□□□ 0.66
CPNE3O75131 DBNDD2-206ENST00000372720 1481 ntTSL 1 (best) BASIC19.16■□□□□ 0.66
CPNE3O75131 TMEM11-201ENST00000317635 2095 ntAPPRIS P1 TSL 1 (best) BASIC19.15■□□□□ 0.66
CPNE3O75131 GPR162-203ENST00000428545 1610 ntTSL 1 (best) BASIC19.15■□□□□ 0.66
CPNE3O75131 MARK2-202ENST00000361128 3004 ntAPPRIS ALT2 TSL 1 (best) BASIC19.15■□□□□ 0.66
CPNE3O75131 NEURL3-202ENST00000435380 1675 ntTSL 1 (best) BASIC19.15■□□□□ 0.66
CPNE3O75131 AC005229.4-201ENST00000610085 2198 ntBASIC19.15■□□□□ 0.66
CPNE3O75131 TNFRSF14-201ENST00000355716 1707 ntAPPRIS P2 TSL 1 (best) BASIC19.15■□□□□ 0.66
CPNE3O75131 AC121338.2-201ENST00000622535 1744 ntBASIC19.15■□□□□ 0.66
CPNE3O75131 ABHD14A-201ENST00000273596 1062 ntAPPRIS P1 TSL 1 (best) BASIC19.15■□□□□ 0.66
CPNE3O75131 AK2-201ENST00000354858 1021 ntAPPRIS P4 TSL 1 (best) BASIC19.15■□□□□ 0.66
CPNE3O75131 PLPP7-201ENST00000372261 972 ntTSL 2 BASIC19.15■□□□□ 0.66
CPNE3O75131 ISG20-202ENST00000379224 540 ntTSL 3 BASIC19.15■□□□□ 0.66
CPNE3O75131 AL596275.1-201ENST00000423464 877 ntBASIC19.15■□□□□ 0.66
CPNE3O75131 THEM4-205ENST00000489410 643 ntTSL 2 BASIC19.15■□□□□ 0.66
CPNE3O75131 AP001458.2-201ENST00000528405 577 ntAPPRIS P1 TSL 4 BASIC19.15■□□□□ 0.66
CPNE3O75131 MCRIP1-203ENST00000538396 925 ntAPPRIS P1 TSL 1 (best) BASIC19.15■□□□□ 0.66
CPNE3O75131 BCL2L10-202ENST00000561198 825 ntAPPRIS ALT2 TSL 1 (best) BASIC19.15■□□□□ 0.66
CPNE3O75131 FBXL12-203ENST00000586073 582 ntTSL 2 BASIC19.15■□□□□ 0.66
CPNE3O75131 CIRBP-213ENST00000587323 1092 ntTSL 5 BASIC19.15■□□□□ 0.66
CPNE3O75131 MTDHP1-201ENST00000605323 784 ntBASIC19.15■□□□□ 0.66
CPNE3O75131 ZNF579-201ENST00000325421 2899 ntAPPRIS P1 TSL 2 BASIC19.15■□□□□ 0.66
CPNE3O75131 MRPL4-202ENST00000307422 1320 ntAPPRIS P2 TSL 5 BASIC19.15■□□□□ 0.66
CPNE3O75131 CDKN2B-AS1-217ENST00000585267 1337 ntTSL 1 (best) BASIC19.15■□□□□ 0.66
CPNE3O75131 TMEM191C-214ENST00000621561 1337 ntAPPRIS P2 TSL 5 BASIC19.15■□□□□ 0.66
CPNE3O75131 CHRDL2-203ENST00000376332 1867 ntAPPRIS ALT2 TSL 1 (best) BASIC19.15■□□□□ 0.66
CPNE3O75131 TTYH1-202ENST00000376530 1885 ntAPPRIS P3 TSL 1 (best) BASIC19.15■□□□□ 0.66
CPNE3O75131 SQLE-206ENST00000523430 1879 ntTSL 2 BASIC19.15■□□□□ 0.66
CPNE3O75131 FAM83H-201ENST00000388913 5654 ntAPPRIS P1 TSL 5 BASIC19.15■□□□□ 0.66
CPNE3O75131 MTFP1-201ENST00000266263 1370 ntAPPRIS P1 TSL 1 (best) BASIC19.15■□□□□ 0.66
CPNE3O75131 RASSF1-203ENST00000359365 1923 ntAPPRIS ALT1 TSL 1 (best) BASIC19.15■□□□□ 0.66
CPNE3O75131 ACADS-202ENST00000411593 1398 ntTSL 2 BASIC19.15■□□□□ 0.66
CPNE3O75131 ZNF668-209ENST00000539836 2469 ntTSL 5 BASIC19.15■□□□□ 0.66
CPNE3O75131 SDHA-220ENST00000617470 1952 ntTSL 5 BASIC19.15■□□□□ 0.66
CPNE3O75131 ZDHHC24-203ENST00000526986 1424 ntTSL 1 (best) BASIC19.15■□□□□ 0.66
CPNE3O75131 CPNE9-203ENST00000383832 2068 ntAPPRIS P1 TSL 5 BASIC19.15■□□□□ 0.66
CPNE3O75131 AC007952.6-201ENST00000573168 2673 ntBASIC19.15■□□□□ 0.66
CPNE3O75131 AC003957.1-201ENST00000625108 2673 ntBASIC19.15■□□□□ 0.66
CPNE3O75131 PLLP-201ENST00000219207 1512 ntAPPRIS P1 TSL 1 (best) BASIC19.15■□□□□ 0.66
CPNE3O75131 CIZ1-203ENST00000357558 2907 ntAPPRIS ALT2 TSL 5 BASIC19.14■□□□□ 0.66
CPNE3O75131 TRABD-204ENST00000395829 1628 ntAPPRIS ALT2 TSL 5 BASIC19.14■□□□□ 0.66
CPNE3O75131 TPTEP1-205ENST00000558085 1738 ntTSL 2 BASIC19.14■□□□□ 0.66
CPNE3O75131 BCAM-201ENST00000270233 2402 ntAPPRIS P1 TSL 1 (best) BASIC19.14■□□□□ 0.66
CPNE3O75131 UBR2-203ENST00000372903 2423 ntTSL 1 (best) BASIC19.14■□□□□ 0.66
CPNE3O75131 ODF3B-201ENST00000329363 970 ntAPPRIS P1 TSL 5 BASIC19.14■□□□□ 0.65
CPNE3O75131 DNPH1-202ENST00000393987 796 ntTSL 2 BASIC19.14■□□□□ 0.65
CPNE3O75131 AC239809.2-201ENST00000415381 517 ntBASIC19.14■□□□□ 0.65
CPNE3O75131 PTTG1-205ENST00000520452 895 ntAPPRIS P1 TSL 3 BASIC19.14■□□□□ 0.65
CPNE3O75131 AL929601.1-201ENST00000551565 573 ntTSL 4 BASIC19.14■□□□□ 0.65
CPNE3O75131 AC009090.2-201ENST00000565829 472 ntTSL 3 BASIC19.14■□□□□ 0.65
CPNE3O75131 METTL23-208ENST00000588822 1049 ntTSL 3 BASIC19.14■□□□□ 0.65
CPNE3O75131 AL024498.1-202ENST00000606652 480 ntTSL 2 BASIC19.14■□□□□ 0.65
CPNE3O75131 SUN1-220ENST00000457378 1309 ntTSL 1 (best) BASIC19.14■□□□□ 0.65
CPNE3O75131 FAM20B-201ENST00000263733 5984 ntAPPRIS P1 TSL 1 (best) BASIC19.14■□□□□ 0.65
CPNE3O75131 HAUS4-202ENST00000342454 1474 ntTSL 1 (best) BASIC19.14■□□□□ 0.65
CPNE3O75131 MAZ-214ENST00000568544 1464 ntTSL 2 BASIC19.14■□□□□ 0.65
CPNE3O75131 ARHGDIA-202ENST00000400721 1568 ntTSL 2 BASIC19.14■□□□□ 0.65
CPNE3O75131 NSUN5-204ENST00000438747 1663 ntAPPRIS P4 TSL 1 (best) BASIC19.14■□□□□ 0.65
CPNE3O75131 VCPKMT-202ENST00000395860 1761 ntAPPRIS P1 TSL 1 (best) BASIC19.14■□□□□ 0.65
CPNE3O75131 KCNQ5-207ENST00000403813 6539 ntAPPRIS ALT2 TSL 5 BASIC19.14■□□□□ 0.65
CPNE3O75131 FIP1L1-201ENST00000306932 1878 ntAPPRIS ALT2 TSL 1 (best) BASIC19.14■□□□□ 0.65
CPNE3O75131 CENPU-201ENST00000281453 1998 ntAPPRIS P2 TSL 1 (best) BASIC19.13■□□□□ 0.65
CPNE3O75131 SORCS2-203ENST00000507866 6152 ntAPPRIS P2 TSL 1 (best) BASIC19.13■□□□□ 0.65
CPNE3O75131 NR2F2-201ENST00000394166 5275 ntAPPRIS P1 TSL 1 (best) BASIC19.13■□□□□ 0.65
CPNE3O75131 COPS9-201ENST00000307266 759 ntTSL 1 (best) BASIC19.13■□□□□ 0.65
CPNE3O75131 PRSS57-201ENST00000329267 1025 ntAPPRIS ALT2 TSL 1 (best) BASIC19.13■□□□□ 0.65
CPNE3O75131 SPATA2L-202ENST00000335360 1001 ntTSL 1 (best) BASIC19.13■□□□□ 0.65
CPNE3O75131 CLTA-202ENST00000345519 1073 ntAPPRIS ALT1 TSL 1 (best) BASIC19.13■□□□□ 0.65
CPNE3O75131 HP1BP3-202ENST00000375000 928 ntTSL 1 (best) BASIC19.13■□□□□ 0.65
CPNE3O75131 AL049780.2-201ENST00000556236 367 ntTSL 3 BASIC19.13■□□□□ 0.65
CPNE3O75131 RPL17-204ENST00000579248 790 ntAPPRIS P1 TSL 2 BASIC19.13■□□□□ 0.65
CPNE3O75131 LINC00654-202ENST00000589201 579 ntTSL 3 BASIC19.13■□□□□ 0.65
CPNE3O75131 NCBP2-AS2-201ENST00000602845 918 ntAPPRIS P1 BASIC19.13■□□□□ 0.65
CPNE3O75131 PRSS57-202ENST00000613411 1090 ntAPPRIS P3 TSL 1 (best) BASIC19.13■□□□□ 0.65
CPNE3O75131 VEGFB-201ENST00000309422 1380 ntAPPRIS P3 TSL 1 (best) BASIC19.13■□□□□ 0.65
CPNE3O75131 SYT7-209ENST00000542836 1362 ntTSL 5 BASIC19.13■□□□□ 0.65
CPNE3O75131 TSSK6-201ENST00000585580 1467 ntAPPRIS P1 BASIC19.13■□□□□ 0.65
CPNE3O75131 ZDHHC5-201ENST00000287169 4666 ntAPPRIS P1 TSL 1 (best) BASIC19.13■□□□□ 0.65
CPNE3O75131 ADCK2-201ENST00000072869 2377 ntAPPRIS P1 TSL 1 (best) BASIC19.13■□□□□ 0.65
CPNE3O75131 HDAC4-201ENST00000345617 8976 ntAPPRIS P1 TSL 1 (best) BASIC19.13■□□□□ 0.65
CPNE3O75131 HDAC4-215ENST00000543185 8990 ntTSL 5 BASIC19.13■□□□□ 0.65
CPNE3O75131 TRIM58-201ENST00000366481 3225 ntAPPRIS P1 TSL 1 (best) BASIC19.13■□□□□ 0.65
CPNE3O75131 AGAP3-202ENST00000397238 3225 ntAPPRIS P2 TSL 1 (best) BASIC19.13■□□□□ 0.65
CPNE3O75131 CADPS-201ENST00000283269 4591 ntAPPRIS P4 TSL 1 (best) BASIC19.12■□□□□ 0.65
CPNE3O75131 CRTC1-203ENST00000594658 2384 ntTSL 1 (best) BASIC19.12■□□□□ 0.65
Retrieved 100 of 98,524 protein–RNA pairs in 22.6 ms