Protein–RNA interactions for Protein: O75112

LDB3, LIM domain-binding protein 3, humanhuman

Predictions only

Length 727 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LDB3O75112 WT1-212ENST00000640146 1554 ntAPPRIS P3 TSL 1 (best) BASIC18.81■□□□□ 0.6
LDB3O75112 NEK3-208ENST00000618534 2414 ntAPPRIS P2 TSL 5 BASIC18.81■□□□□ 0.6
LDB3O75112 TAF15-215ENST00000605844 2191 ntAPPRIS P3 TSL 1 (best) BASIC18.81■□□□□ 0.6
LDB3O75112 DMRTA2-202ENST00000418121 2840 ntAPPRIS P1 TSL 1 (best) BASIC18.81■□□□□ 0.6
LDB3O75112 HIC1-207ENST00000619757 6711 ntTSL 1 (best) BASIC18.81■□□□□ 0.6
LDB3O75112 SUMO3-204ENST00000411651 1921 ntTSL 2 BASIC18.81■□□□□ 0.6
LDB3O75112 CKLF-201ENST00000264001 669 ntAPPRIS P4 TSL 1 (best) BASIC18.81■□□□□ 0.6
LDB3O75112 MRAP-201ENST00000303645 935 ntAPPRIS P4 TSL 1 (best) BASIC18.81■□□□□ 0.6
LDB3O75112 BID-202ENST00000342111 854 ntTSL 1 (best) BASIC18.81■□□□□ 0.6
LDB3O75112 LCE2A-201ENST00000368779 592 ntAPPRIS P1 TSL 1 (best) BASIC18.81■□□□□ 0.6
LDB3O75112 IPO13-201ENST00000372339 1201 ntTSL 2 BASIC18.81■□□□□ 0.6
LDB3O75112 HLA-G-202ENST00000376815 851 ntBASIC18.81■□□□□ 0.6
LDB3O75112 HLA-G-203ENST00000376818 1127 ntBASIC18.81■□□□□ 0.6
LDB3O75112 GGT1-206ENST00000404223 952 ntTSL 2 BASIC18.81■□□□□ 0.6
LDB3O75112 AL390719.1-204ENST00000412397 1219 ntBASIC18.81■□□□□ 0.6
LDB3O75112 ZNF467-202ENST00000484747 913 ntTSL 2 BASIC18.81■□□□□ 0.6
LDB3O75112 PLEKHB1-216ENST00000543085 632 ntTSL 3 BASIC18.81■□□□□ 0.6
LDB3O75112 NDUFB10-204ENST00000569148 628 ntTSL 2 BASIC18.81■□□□□ 0.6
LDB3O75112 AC005829.2-201ENST00000571422 1056 ntBASIC18.81■□□□□ 0.6
LDB3O75112 GGTLC2-204ENST00000613850 973 ntAPPRIS P1 TSL 1 (best) BASIC18.81■□□□□ 0.6
LDB3O75112 GGTLC2-205ENST00000618722 1047 ntAPPRIS P1 TSL 1 (best) BASIC18.81■□□□□ 0.6
LDB3O75112 CXCR3-201ENST00000373691 1861 ntTSL 1 (best) BASIC18.81■□□□□ 0.6
LDB3O75112 OLFM1-204ENST00000371793 2444 ntAPPRIS P1 TSL 3 BASIC18.81■□□□□ 0.6
LDB3O75112 MTMR12-203ENST00000382142 5187 ntAPPRIS P3 TSL 1 (best) BASIC18.81■□□□□ 0.6
LDB3O75112 SNAP91-211ENST00000520213 2168 ntTSL 1 (best) BASIC18.81■□□□□ 0.6
LDB3O75112 UBE2B-201ENST00000265339 2515 ntAPPRIS P1 TSL 1 (best) BASIC18.8■□□□□ 0.6
LDB3O75112 KDELR3-201ENST00000216014 1728 ntAPPRIS P1 TSL 1 (best) BASIC18.8■□□□□ 0.6
LDB3O75112 AC007249.2-201ENST00000553181 1737 ntTSL 5 BASIC18.8■□□□□ 0.6
LDB3O75112 RBM42-204ENST00000589559 1328 ntTSL 5 BASIC18.8■□□□□ 0.6
LDB3O75112 MATN4-204ENST00000372756 2077 ntAPPRIS P2 TSL 1 (best) BASIC18.8■□□□□ 0.6
LDB3O75112 AFDN-202ENST00000351017 5823 ntTSL 5 BASIC18.8■□□□□ 0.6
LDB3O75112 DXO-202ENST00000375349 1667 ntAPPRIS P1 TSL 5 BASIC18.8■□□□□ 0.6
LDB3O75112 ST3GAL3-239ENST00000545417 1667 ntTSL 5 BASIC18.8■□□□□ 0.6
LDB3O75112 NOS3-204ENST00000467517 2377 ntTSL 1 (best) BASIC18.8■□□□□ 0.6
LDB3O75112 MEA1-201ENST00000244711 1089 ntAPPRIS P1 TSL 1 (best) BASIC18.8■□□□□ 0.6
LDB3O75112 AC012146.1-202ENST00000413077 474 ntTSL 2 BASIC18.8■□□□□ 0.6
LDB3O75112 OTUB1-203ENST00000428192 1296 ntAPPRIS P2 TSL 2 BASIC18.8■□□□□ 0.6
LDB3O75112 OCIAD2-205ENST00000508632 1163 ntAPPRIS P1 TSL 1 (best) BASIC18.8■□□□□ 0.6
LDB3O75112 HAGHL-213ENST00000564545 663 ntTSL 3 BASIC18.8■□□□□ 0.6
LDB3O75112 NDUFV2-AS1-201ENST00000582375 770 ntTSL 2 BASIC18.8■□□□□ 0.6
LDB3O75112 PQLC2-201ENST00000375153 2153 ntAPPRIS P1 TSL 2 BASIC18.8■□□□□ 0.6
LDB3O75112 RPUSD1-202ENST00000561734 2159 ntAPPRIS P1 TSL 1 (best) BASIC18.8■□□□□ 0.6
LDB3O75112 BX119927.1-201ENST00000636596 1552 ntBASIC18.8■□□□□ 0.6
LDB3O75112 RAD23A-203ENST00000586534 1746 ntAPPRIS P3 TSL 1 (best) BASIC18.8■□□□□ 0.6
LDB3O75112 KIAA0895L-206ENST00000563902 2233 ntAPPRIS P1 TSL 1 (best) BASIC18.8■□□□□ 0.6
LDB3O75112 OSBPL5-208ENST00000478260 2653 ntTSL 2 BASIC18.79■□□□□ 0.6
LDB3O75112 NR1H2-211ENST00000599105 1830 ntAPPRIS ALT2 TSL 5 BASIC18.79■□□□□ 0.6
LDB3O75112 TXNDC5-201ENST00000379757 2964 ntAPPRIS P1 TSL 1 (best) BASIC18.79■□□□□ 0.6
LDB3O75112 RASL12-201ENST00000220062 2640 ntAPPRIS P1 TSL 1 (best) BASIC18.79■□□□□ 0.6
LDB3O75112 SPEG-203ENST00000396688 1457 ntTSL 3 BASIC18.79■□□□□ 0.6
LDB3O75112 UBXN6-201ENST00000301281 1943 ntAPPRIS P1 TSL 1 (best) BASIC18.79■□□□□ 0.6
LDB3O75112 AC068473.1-201ENST00000317008 1111 ntTSL 2 BASIC18.79■□□□□ 0.6
LDB3O75112 GUK1-209ENST00000366730 937 ntAPPRIS P3 TSL 3 BASIC18.79■□□□□ 0.6
LDB3O75112 AC114730.2-201ENST00000417267 668 ntTSL 3 BASIC18.79■□□□□ 0.6
LDB3O75112 STPG4-207ENST00000445927 891 ntAPPRIS P1 TSL 5 BASIC18.79■□□□□ 0.6
LDB3O75112 SLC29A4P2-201ENST00000504749 1089 ntBASIC18.79■□□□□ 0.6
LDB3O75112 AC034102.6-201ENST00000550947 559 ntTSL 4 BASIC18.79■□□□□ 0.6
LDB3O75112 FFAR3-202ENST00000594310 1182 ntAPPRIS P1 BASIC18.79■□□□□ 0.6
LDB3O75112 PTCRA-204ENST00000616441 1125 ntAPPRIS ALT2 TSL 2 BASIC18.79■□□□□ 0.6
LDB3O75112 TBCB-214ENST00000629269 413 ntTSL 5 BASIC18.79■□□□□ 0.6
LDB3O75112 SCAMP3-201ENST00000302631 1446 ntAPPRIS P1 TSL 1 (best) BASIC18.79■□□□□ 0.6
LDB3O75112 SRSF4-201ENST00000373795 2387 ntAPPRIS P2 TSL 1 (best) BASIC18.79■□□□□ 0.6
LDB3O75112 DMPK-205ENST00000458663 2548 ntTSL 5 BASIC18.79■□□□□ 0.6
LDB3O75112 TRIM46-204ENST00000368385 1864 ntTSL 1 (best) BASIC18.79■□□□□ 0.6
LDB3O75112 MAP7D2-203ENST00000443379 2476 ntAPPRIS ALT2 TSL 2 BASIC18.79■□□□□ 0.6
LDB3O75112 NRXN2-201ENST00000265459 6621 ntAPPRIS P3 TSL 5 BASIC18.79■□□□□ 0.6
LDB3O75112 KCNK17-201ENST00000373231 1658 ntAPPRIS P3 TSL 1 (best) BASIC18.79■□□□□ 0.6
LDB3O75112 CD247-202ENST00000392122 1678 ntAPPRIS ALT1 TSL 1 (best) BASIC18.79■□□□□ 0.6
LDB3O75112 GLT8D1-206ENST00000478968 1826 ntAPPRIS P1 TSL 1 (best) BASIC18.79■□□□□ 0.6
LDB3O75112 LRRC45-201ENST00000306688 2701 ntAPPRIS P1 TSL 1 (best) BASIC18.79■□□□□ 0.6
LDB3O75112 CHST1-201ENST00000308064 2718 ntAPPRIS P1 TSL 1 (best) BASIC18.79■□□□□ 0.6
LDB3O75112 KCTD13-207ENST00000568000 2528 ntAPPRIS P1 TSL 1 (best) BASIC18.78■□□□□ 0.6
LDB3O75112 PRMT8-202ENST00000382622 2366 ntAPPRIS P1 TSL 1 (best) BASIC18.78■□□□□ 0.6
LDB3O75112 BLCAP-208ENST00000414542 2205 ntAPPRIS P1 TSL 3 BASIC18.78■□□□□ 0.6
LDB3O75112 LENG9-203ENST00000611161 1916 ntAPPRIS P1 BASIC18.78■□□□□ 0.6
LDB3O75112 MAP3K14-AS1-203ENST00000585780 2475 ntTSL 2 BASIC18.78■□□□□ 0.6
LDB3O75112 GPR35-202ENST00000403859 2032 ntAPPRIS P3 TSL 2 BASIC18.78■□□□□ 0.6
LDB3O75112 SEMA6B-202ENST00000586965 2034 ntAPPRIS ALT2 TSL 1 (best) BASIC18.78■□□□□ 0.6
LDB3O75112 TREX2-206ENST00000370232 1864 ntTSL 1 (best) BASIC18.78■□□□□ 0.6
LDB3O75112 SNX7-205ENST00000529992 1589 ntTSL 2 BASIC18.78■□□□□ 0.6
LDB3O75112 PPP1R36-201ENST00000298705 1405 ntAPPRIS P2 TSL 1 (best) BASIC18.78■□□□□ 0.6
LDB3O75112 SHKBP1-225ENST00000600733 2284 ntTSL 5 BASIC18.78■□□□□ 0.6
LDB3O75112 C10orf76-201ENST00000311122 724 ntTSL 1 (best) BASIC18.78■□□□□ 0.6
LDB3O75112 PPP1R14A-202ENST00000347262 637 ntTSL 1 (best) BASIC18.78■□□□□ 0.6
LDB3O75112 AC114730.1-201ENST00000400768 472 ntTSL 4 BASIC18.78■□□□□ 0.6
LDB3O75112 AC004889.1-203ENST00000464929 819 ntTSL 5 BASIC18.78■□□□□ 0.6
LDB3O75112 OR2A1-AS1-207ENST00000486094 819 ntBASIC18.78■□□□□ 0.6
LDB3O75112 AC092849.2-201ENST00000492523 333 ntTSL 3 BASIC18.78■□□□□ 0.6
LDB3O75112 CAMLG-202ENST00000514518 895 ntTSL 1 (best) BASIC18.78■□□□□ 0.6
LDB3O75112 CD99P1-205ENST00000527459 561 ntBASIC18.78■□□□□ 0.6
LDB3O75112 CFL1-211ENST00000531407 1062 ntTSL 2 BASIC18.78■□□□□ 0.6
LDB3O75112 HMOX2-208ENST00000570646 2147 ntAPPRIS P1 TSL 1 (best) BASIC18.78■□□□□ 0.6
LDB3O75112 MAPK15-201ENST00000338033 1961 ntAPPRIS P1 TSL 1 (best) BASIC18.78■□□□□ 0.6
LDB3O75112 CHD1L-201ENST00000361293 2484 ntTSL 2 BASIC18.78■□□□□ 0.6
LDB3O75112 EIF2B1-204ENST00000537073 1768 ntTSL 2 BASIC18.78■□□□□ 0.6
LDB3O75112 NDRG2-215ENST00000553503 2162 ntAPPRIS ALT1 TSL 1 (best) BASIC18.78■□□□□ 0.6
LDB3O75112 MARCH9-201ENST00000266643 2982 ntAPPRIS P1 TSL 1 (best) BASIC18.78■□□□□ 0.6
LDB3O75112 PGAM5-203ENST00000498926 2834 ntAPPRIS P1 TSL 2 BASIC18.78■□□□□ 0.6
LDB3O75112 BZW1-209ENST00000452790 1473 ntTSL 2 BASIC18.77■□□□□ 0.6
LDB3O75112 RTN1-202ENST00000342503 1703 ntAPPRIS ALT1 TSL 1 (best) BASIC18.77■□□□□ 0.6
Retrieved 100 of 98,524 protein–RNA pairs in 21.4 ms