Protein–RNA interactions for Protein: O60840

CACNA1F, Voltage-dependent L-type calcium channel subunit alpha-1F, humanhuman

Predictions only

Length 1,977 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CACNA1FO60840 CIZ1-203ENST00000357558 2907 ntAPPRIS ALT2 TSL 5 BASIC25.29■■□□□ 1.64
CACNA1FO60840 EFS-203ENST00000429593 2610 ntTSL 2 BASIC25.29■■□□□ 1.64
CACNA1FO60840 SNAP91-211ENST00000520213 2168 ntTSL 1 (best) BASIC25.29■■□□□ 1.64
CACNA1FO60840 AC092667.1-201ENST00000434301 2586 ntBASIC25.29■■□□□ 1.64
CACNA1FO60840 RHNO1-204ENST00000489288 1870 ntAPPRIS P3 TSL 1 (best) BASIC25.29■■□□□ 1.64
CACNA1FO60840 SPDYE2-201ENST00000341656 1219 ntAPPRIS ALT2 TSL 1 (best) BASIC25.29■■□□□ 1.64
CACNA1FO60840 AL158047.1-201ENST00000445918 881 ntBASIC25.29■■□□□ 1.64
CACNA1FO60840 SPDYE2B-202ENST00000455020 1219 ntAPPRIS ALT2 TSL 1 (best) BASIC25.29■■□□□ 1.64
CACNA1FO60840 TNFRSF18-204ENST00000486728 727 ntAPPRIS ALT2 TSL 1 (best) BASIC25.29■■□□□ 1.64
CACNA1FO60840 AC013268.1-201ENST00000639717 1208 ntTSL 5 BASIC25.29■■□□□ 1.64
CACNA1FO60840 LINC01006-201ENST00000333319 2292 ntBASIC25.29■■□□□ 1.64
CACNA1FO60840 NR1H2-211ENST00000599105 1830 ntAPPRIS ALT2 TSL 5 BASIC25.28■■□□□ 1.64
CACNA1FO60840 AC116351.2-201ENST00000606540 1585 ntBASIC25.28■■□□□ 1.64
CACNA1FO60840 ESPN-202ENST00000416731 1338 ntTSL 5 BASIC25.28■■□□□ 1.64
CACNA1FO60840 COMMD7-202ENST00000446419 1343 ntAPPRIS ALT1 TSL 2 BASIC25.28■■□□□ 1.64
CACNA1FO60840 E2F1-201ENST00000343380 2503 ntAPPRIS P1 TSL 1 (best) BASIC25.28■■□□□ 1.64
CACNA1FO60840 NF2-201ENST00000334961 2020 ntTSL 1 (best) BASIC25.28■■□□□ 1.64
CACNA1FO60840 HSPA8-202ENST00000453788 2004 ntTSL 1 (best) BASIC25.28■■□□□ 1.64
CACNA1FO60840 COX6C-208ENST00000522940 694 ntAPPRIS P1 TSL 3 BASIC25.28■■□□□ 1.64
CACNA1FO60840 MYCN-201ENST00000281043 2602 ntAPPRIS P1 TSL 5 BASIC25.28■■□□□ 1.64
CACNA1FO60840 LETM2-208ENST00000524874 1459 ntTSL 5 BASIC25.28■■□□□ 1.64
CACNA1FO60840 TRIB3-201ENST00000217233 2499 ntAPPRIS P3 TSL 1 (best) BASIC25.28■■□□□ 1.64
CACNA1FO60840 SERBP1-201ENST00000361219 2103 ntAPPRIS ALT1 TSL 1 (best) BASIC25.28■■□□□ 1.64
CACNA1FO60840 TMEM8A-201ENST00000250930 2346 ntAPPRIS ALT2 TSL 2 BASIC25.28■■□□□ 1.64
CACNA1FO60840 NCLN-205ENST00000590671 2070 ntTSL 2 BASIC25.28■■□□□ 1.64
CACNA1FO60840 ZNF497-202ENST00000425453 2261 ntAPPRIS P1 TSL 1 (best) BASIC25.28■■□□□ 1.64
CACNA1FO60840 USP39-204ENST00000409766 2033 ntTSL 2 BASIC25.27■■□□□ 1.64
CACNA1FO60840 COX7A2L-201ENST00000234301 1112 ntAPPRIS P1 TSL 1 (best) BASIC25.27■■□□□ 1.64
CACNA1FO60840 IMMP2L-201ENST00000331762 1205 ntAPPRIS P1 TSL 1 (best) BASIC25.27■■□□□ 1.64
CACNA1FO60840 C6orf48-205ENST00000375640 1053 ntAPPRIS P1 TSL 1 (best) BASIC25.27■■□□□ 1.64
CACNA1FO60840 GLYCTK-205ENST00000473032 935 ntTSL 1 (best) BASIC25.27■■□□□ 1.64
CACNA1FO60840 AC093827.2-201ENST00000512654 315 ntBASIC25.27■■□□□ 1.64
CACNA1FO60840 METTL23-208ENST00000588822 1049 ntTSL 3 BASIC25.27■■□□□ 1.64
CACNA1FO60840 DTWD1-202ENST00000403028 1584 ntAPPRIS P1 TSL 1 (best) BASIC25.27■■□□□ 1.64
CACNA1FO60840 IRF7-205ENST00000397574 1968 ntAPPRIS ALT2 TSL 1 (best) BASIC25.27■■□□□ 1.64
CACNA1FO60840 PDCD2-204ENST00000453163 2657 ntTSL 1 (best) BASIC25.27■■□□□ 1.64
CACNA1FO60840 GLT8D1-206ENST00000478968 1826 ntAPPRIS P1 TSL 1 (best) BASIC25.27■■□□□ 1.64
CACNA1FO60840 OLIG2-202ENST00000382357 2578 ntAPPRIS P1 TSL 1 (best) BASIC25.27■■□□□ 1.64
CACNA1FO60840 SLC39A5-209ENST00000454355 1968 ntAPPRIS P1 TSL 1 (best) BASIC25.27■■□□□ 1.64
CACNA1FO60840 CD37-204ENST00000535669 1674 ntTSL 2 BASIC25.27■■□□□ 1.64
CACNA1FO60840 TMEM91-203ENST00000392002 1389 ntAPPRIS P1 TSL 2 BASIC25.27■■□□□ 1.64
CACNA1FO60840 CCT7-202ENST00000398422 1234 ntTSL 2 BASIC25.27■■□□□ 1.64
CACNA1FO60840 BCL2L10-202ENST00000561198 825 ntAPPRIS ALT2 TSL 1 (best) BASIC25.27■■□□□ 1.64
CACNA1FO60840 CDK5R2-201ENST00000302625 2508 ntAPPRIS P1 BASIC25.27■■□□□ 1.64
CACNA1FO60840 FENDRR-203ENST00000595886 3095 ntTSL 2 BASIC25.27■■□□□ 1.64
CACNA1FO60840 HDHD5-201ENST00000155674 1735 ntAPPRIS P3 TSL 1 (best) BASIC25.27■■□□□ 1.64
CACNA1FO60840 MED26-207ENST00000611692 1444 ntTSL 1 (best) BASIC25.26■■□□□ 1.64
CACNA1FO60840 UNKL-205ENST00000397464 2180 ntTSL 2 BASIC25.26■■□□□ 1.63
CACNA1FO60840 MAP7-206ENST00000611373 2317 ntAPPRIS ALT2 TSL 5 BASIC25.26■■□□□ 1.63
CACNA1FO60840 ZNF331-202ENST00000411977 2248 ntAPPRIS P1 TSL 1 (best) BASIC25.26■■□□□ 1.63
CACNA1FO60840 TFP1-202ENST00000475455 1573 ntBASIC25.26■■□□□ 1.63
CACNA1FO60840 NBPF21P-201ENST00000425093 1451 ntBASIC25.26■■□□□ 1.63
CACNA1FO60840 UBE2SP1-201ENST00000450587 669 ntBASIC25.26■■□□□ 1.63
CACNA1FO60840 KRT16P5-201ENST00000455284 522 ntBASIC25.26■■□□□ 1.63
CACNA1FO60840 MRPL2-207ENST00000487429 905 ntTSL 1 (best) BASIC25.26■■□□□ 1.63
CACNA1FO60840 LEF1-AS1-203ENST00000507799 459 ntTSL 3 BASIC25.26■■□□□ 1.63
CACNA1FO60840 ZNF852-201ENST00000436261 1968 ntAPPRIS P1 TSL 2 BASIC25.26■■□□□ 1.63
CACNA1FO60840 PPM1D-204ENST00000629650 1525 ntTSL 5 BASIC25.26■■□□□ 1.63
CACNA1FO60840 CRACR2B-207ENST00000528542 1792 ntTSL 1 (best) BASIC25.26■■□□□ 1.63
CACNA1FO60840 FAM189B-201ENST00000350210 2379 ntTSL 1 (best) BASIC25.26■■□□□ 1.63
CACNA1FO60840 MALT1-201ENST00000345724 2866 ntAPPRIS ALT2 TSL 1 (best) BASIC25.26■■□□□ 1.63
CACNA1FO60840 TCP11-202ENST00000311875 2166 ntAPPRIS ALT2 TSL 1 (best) BASIC25.26■■□□□ 1.63
CACNA1FO60840 GALNT16-204ENST00000553669 1629 ntTSL 1 (best) BASIC25.26■■□□□ 1.63
CACNA1FO60840 TMEM259-202ENST00000356663 2748 ntAPPRIS ALT2 TSL 1 (best) BASIC25.25■■□□□ 1.63
CACNA1FO60840 NDUFS6-202ENST00000469176 550 ntTSL 2 BASIC25.25■■□□□ 1.63
CACNA1FO60840 RBCK1-213ENST00000475269 1200 ntTSL 1 (best) BASIC25.25■■□□□ 1.63
CACNA1FO60840 AC110285.5-201ENST00000611501 352 ntBASIC25.25■■□□□ 1.63
CACNA1FO60840 CORO1B-210ENST00000627576 960 ntTSL 5 BASIC25.25■■□□□ 1.63
CACNA1FO60840 REST-211ENST00000640168 1268 ntTSL 1 (best) BASIC25.25■■□□□ 1.63
CACNA1FO60840 BRD4-202ENST00000360016 3240 ntAPPRIS ALT2 TSL 1 (best) BASIC25.25■■□□□ 1.63
CACNA1FO60840 CIRBP-215ENST00000588030 1509 ntAPPRIS P3 TSL 5 BASIC25.25■■□□□ 1.63
CACNA1FO60840 CCDC71-201ENST00000321895 1781 ntAPPRIS P1 TSL 1 (best) BASIC25.25■■□□□ 1.63
CACNA1FO60840 SPINK2-202ENST00000504762 659 ntAPPRIS ALT2 TSL 2 BASIC25.25■■□□□ 1.63
CACNA1FO60840 B3GAT3-205ENST00000534026 1120 ntTSL 2 BASIC25.25■■□□□ 1.63
CACNA1FO60840 C1QL1P1-201ENST00000568105 661 ntBASIC25.25■■□□□ 1.63
CACNA1FO60840 MAG-201ENST00000361922 2426 ntAPPRIS ALT2 TSL 1 (best) BASIC25.25■■□□□ 1.63
CACNA1FO60840 MME-217ENST00000616757 1315 ntTSL 5 BASIC25.25■■□□□ 1.63
CACNA1FO60840 WIPF1-203ENST00000392546 2180 ntAPPRIS P2 TSL 5 BASIC25.25■■□□□ 1.63
CACNA1FO60840 PELI3-201ENST00000320740 2740 ntTSL 1 (best) BASIC25.24■■□□□ 1.63
CACNA1FO60840 HOXC13-AS-201ENST00000512916 1408 ntTSL 3 BASIC25.24■■□□□ 1.63
CACNA1FO60840 DNM2-205ENST00000585892 2774 ntTSL 1 (best) BASIC25.24■■□□□ 1.63
CACNA1FO60840 AL023875.1-201ENST00000640777 796 ntBASIC25.24■■□□□ 1.63
CACNA1FO60840 PGAP1-204ENST00000409475 2443 ntTSL 2 BASIC25.24■■□□□ 1.63
CACNA1FO60840 NTRK3-206ENST00000540489 2145 ntTSL 5 BASIC25.24■■□□□ 1.63
CACNA1FO60840 ABHD5-205ENST00000458276 1690 ntAPPRIS P1 TSL 1 (best) BASIC25.24■■□□□ 1.63
CACNA1FO60840 RAD23A-203ENST00000586534 1746 ntAPPRIS P3 TSL 1 (best) BASIC25.24■■□□□ 1.63
CACNA1FO60840 MCAT-202ENST00000327555 1134 ntTSL 1 (best) BASIC25.24■■□□□ 1.63
CACNA1FO60840 TCEAL6-202ENST00000372774 1106 ntAPPRIS P1 TSL 1 (best) BASIC25.24■■□□□ 1.63
CACNA1FO60840 DNPH1-202ENST00000393987 796 ntTSL 2 BASIC25.24■■□□□ 1.63
CACNA1FO60840 RAB29-203ENST00000414729 1157 ntAPPRIS P1 TSL 1 (best) BASIC25.24■■□□□ 1.63
CACNA1FO60840 NELFE-206ENST00000444811 1202 ntAPPRIS ALT2 TSL 2 BASIC25.24■■□□□ 1.63
CACNA1FO60840 MCRIP1-201ENST00000455127 1209 ntAPPRIS P1 TSL 1 (best) BASIC25.24■■□□□ 1.63
CACNA1FO60840 MYL5-206ENST00000506838 2956 ntTSL 2 BASIC25.24■■□□□ 1.63
CACNA1FO60840 MOK-228ENST00000523231 1114 ntTSL 1 (best) BASIC25.24■■□□□ 1.63
CACNA1FO60840 ARMC4P1-202ENST00000576034 643 ntTSL 2 BASIC25.24■■□□□ 1.63
CACNA1FO60840 TUBGCP3-204ENST00000464139 2461 ntTSL 1 (best) BASIC25.24■■□□□ 1.63
CACNA1FO60840 U2AF2-202ENST00000450554 3022 ntAPPRIS ALT1 TSL 1 (best) BASIC25.23■■□□□ 1.63
CACNA1FO60840 LRRC29-209ENST00000629962 1303 ntAPPRIS P1 TSL 5 BASIC25.23■■□□□ 1.63
CACNA1FO60840 ARFRP1-214ENST00000622789 2559 ntAPPRIS P1 TSL 1 (best) BASIC25.23■■□□□ 1.63
CACNA1FO60840 ENTPD8-201ENST00000344119 2111 ntTSL 1 (best) BASIC25.23■■□□□ 1.63
Retrieved 100 of 98,524 protein–RNA pairs in 20.4 ms