Protein–RNA interactions for Protein: O15379

HDAC3, Histone deacetylase 3, humanhuman

Predictions only

Length 428 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HDAC3O15379 HOXC4-201ENST00000303406 1524 ntAPPRIS P1 TSL 1 (best) BASIC19.44■□□□□ 0.7
HDAC3O15379 CERS5-203ENST00000422340 2855 ntAPPRIS ALT2 TSL 2 BASIC19.44■□□□□ 0.7
HDAC3O15379 CACNA1I-204ENST00000407673 5952 ntAPPRIS ALT2 TSL 1 (best) BASIC19.44■□□□□ 0.7
HDAC3O15379 ROR1-201ENST00000371079 5832 ntAPPRIS P2 TSL 1 (best) BASIC19.44■□□□□ 0.7
HDAC3O15379 SEPT1-201ENST00000321367 1592 ntAPPRIS P1 TSL 5 BASIC19.44■□□□□ 0.7
HDAC3O15379 FBXO31-201ENST00000311635 5934 ntAPPRIS P1 TSL 1 (best) BASIC19.44■□□□□ 0.7
HDAC3O15379 PCDHB14-202ENST00000624896 2367 ntTSL 2 BASIC19.43■□□□□ 0.7
HDAC3O15379 ADGRA2-201ENST00000315215 6270 ntTSL 1 (best) BASIC19.43■□□□□ 0.7
HDAC3O15379 USP21-201ENST00000289865 2195 ntAPPRIS P1 TSL 1 (best) BASIC19.43■□□□□ 0.7
HDAC3O15379 KDM2A-202ENST00000398645 6511 ntTSL 1 (best) BASIC19.43■□□□□ 0.7
HDAC3O15379 KMT5B-201ENST00000304363 5837 ntAPPRIS P1 TSL 5 BASIC19.43■□□□□ 0.7
HDAC3O15379 CREB3L3-202ENST00000595923 1491 ntAPPRIS ALT2 TSL 1 (best) BASIC19.43■□□□□ 0.7
HDAC3O15379 FAM160A2-201ENST00000265978 3481 ntAPPRIS P3 TSL 1 (best) BASIC19.43■□□□□ 0.7
HDAC3O15379 NUTM2D-201ENST00000381697 3290 ntAPPRIS P5 TSL 1 (best) BASIC19.43■□□□□ 0.7
HDAC3O15379 EIF6-203ENST00000374450 1289 ntAPPRIS P1 TSL 1 (best) BASIC19.43■□□□□ 0.7
HDAC3O15379 AC093817.1-201ENST00000507296 812 ntTSL 3 BASIC19.43■□□□□ 0.7
HDAC3O15379 STOX2-205ENST00000513034 807 ntTSL 3 BASIC19.43■□□□□ 0.7
HDAC3O15379 TESC-206ENST00000541210 936 ntTSL 3 BASIC19.43■□□□□ 0.7
HDAC3O15379 AP005205.2-201ENST00000577327 491 ntTSL 2 BASIC19.43■□□□□ 0.7
HDAC3O15379 AL356652.1-201ENST00000615962 565 ntBASIC19.43■□□□□ 0.7
HDAC3O15379 SBNO2-201ENST00000361757 4923 ntAPPRIS P4 TSL 1 (best) BASIC19.43■□□□□ 0.7
HDAC3O15379 GSTM3-202ENST00000361066 1565 ntAPPRIS P1 TSL 1 (best) BASIC19.43■□□□□ 0.7
HDAC3O15379 AC019069.1-201ENST00000610008 1333 ntBASIC19.43■□□□□ 0.7
HDAC3O15379 NDRG2-215ENST00000553503 2162 ntAPPRIS ALT1 TSL 1 (best) BASIC19.43■□□□□ 0.7
HDAC3O15379 GJB3-202ENST00000373366 2217 ntAPPRIS P1 TSL 1 (best) BASIC19.43■□□□□ 0.7
HDAC3O15379 TUSC2-201ENST00000232496 1691 ntAPPRIS P1 TSL 1 (best) BASIC19.43■□□□□ 0.7
HDAC3O15379 AC233280.1-201ENST00000423600 1684 ntTSL 2 BASIC19.43■□□□□ 0.7
HDAC3O15379 KIAA1456-201ENST00000400069 1982 ntTSL 2 BASIC19.43■□□□□ 0.7
HDAC3O15379 GALK1-201ENST00000225614 1445 ntAPPRIS P1 TSL 2 BASIC19.42■□□□□ 0.7
HDAC3O15379 CXorf40A-204ENST00000423421 1403 ntAPPRIS P3 TSL 1 (best) BASIC19.42■□□□□ 0.7
HDAC3O15379 WDR88-201ENST00000355868 1718 ntAPPRIS P2 TSL 2 BASIC19.42■□□□□ 0.7
HDAC3O15379 NFIX-202ENST00000360105 5459 ntTSL 5 BASIC19.42■□□□□ 0.7
HDAC3O15379 GPR137-201ENST00000313074 1485 ntTSL 5 BASIC19.42■□□□□ 0.7
HDAC3O15379 GPR137-203ENST00000411458 1495 ntTSL 2 BASIC19.42■□□□□ 0.7
HDAC3O15379 CAPZB-205ENST00000433834 1462 ntTSL 2 BASIC19.42■□□□□ 0.7
HDAC3O15379 STX17-212ENST00000534052 2424 ntAPPRIS P1 TSL 1 (best) BASIC19.42■□□□□ 0.7
HDAC3O15379 RFT1-202ENST00000394738 1800 ntTSL 5 BASIC19.42■□□□□ 0.7
HDAC3O15379 MADCAM1-201ENST00000215637 1572 ntAPPRIS P4 TSL 1 (best) BASIC19.42■□□□□ 0.7
HDAC3O15379 SEPT6-202ENST00000354228 1576 ntAPPRIS P4 TSL 1 (best) BASIC19.42■□□□□ 0.7
HDAC3O15379 TMEM54-202ENST00000373463 999 ntAPPRIS P1 TSL 1 (best) BASIC19.42■□□□□ 0.7
HDAC3O15379 TSPY4-201ENST00000383008 1143 ntAPPRIS ALT2 TSL 5 BASIC19.42■□□□□ 0.7
HDAC3O15379 ATPIF1-203ENST00000468425 539 ntTSL 2 BASIC19.42■□□□□ 0.7
HDAC3O15379 AL731577.2-201ENST00000508096 555 ntTSL 2 BASIC19.42■□□□□ 0.7
HDAC3O15379 FBXO33-202ENST00000554190 534 ntTSL 3 BASIC19.42■□□□□ 0.7
HDAC3O15379 AC142381.2-201ENST00000566120 298 ntBASIC19.42■□□□□ 0.7
HDAC3O15379 HERC2P4-206ENST00000568097 1062 ntTSL 5 BASIC19.42■□□□□ 0.7
HDAC3O15379 MARK1-205ENST00000611084 5321 ntAPPRIS ALT1 TSL 1 (best) BASIC19.42■□□□□ 0.7
HDAC3O15379 SMYD2-201ENST00000366957 1671 ntAPPRIS P1 TSL 1 (best) BASIC19.42■□□□□ 0.7
HDAC3O15379 SMARCB1-202ENST00000344921 1728 ntTSL 2 BASIC19.42■□□□□ 0.7
HDAC3O15379 P2RY6-212ENST00000618468 2431 ntAPPRIS P1 TSL 3 BASIC19.42■□□□□ 0.7
HDAC3O15379 KCNQ5-201ENST00000342056 6688 ntAPPRIS ALT1 TSL 5 BASIC19.42■□□□□ 0.7
HDAC3O15379 RIIAD1-201ENST00000326413 1772 ntTSL 2 BASIC19.42■□□□□ 0.7
HDAC3O15379 AC087633.2-202ENST00000565166 1439 ntBASIC19.42■□□□□ 0.7
HDAC3O15379 CD2AP-201ENST00000359314 5412 ntAPPRIS P1 TSL 1 (best) BASIC19.42■□□□□ 0.7
HDAC3O15379 STX6-204ENST00000542060 4809 ntTSL 2 BASIC19.41■□□□□ 0.7
HDAC3O15379 RGMA-208ENST00000556658 1889 ntTSL 1 (best) BASIC19.41■□□□□ 0.7
HDAC3O15379 NAGPA-AS1-202ENST00000632058 2265 ntTSL 2 BASIC19.41■□□□□ 0.7
HDAC3O15379 GRB10-201ENST00000335866 5032 ntTSL 1 (best) BASIC19.41■□□□□ 0.7
HDAC3O15379 CDAN1-201ENST00000356231 4637 ntAPPRIS P1 TSL 1 (best) BASIC19.41■□□□□ 0.7
HDAC3O15379 AOC3-204ENST00000591562 2522 ntTSL 2 BASIC19.41■□□□□ 0.7
HDAC3O15379 RPL8-201ENST00000262584 1041 ntAPPRIS P1 TSL 1 (best) BASIC19.41■□□□□ 0.7
HDAC3O15379 RNF208-202ENST00000392827 1135 ntAPPRIS P1 TSL 5 BASIC19.41■□□□□ 0.7
HDAC3O15379 AL136982.7-201ENST00000609363 465 ntTSL 4 BASIC19.41■□□□□ 0.7
HDAC3O15379 AC093762.3-201ENST00000641918 318 ntAPPRIS P1 BASIC19.41■□□□□ 0.7
HDAC3O15379 INSR-201ENST00000302850 4721 ntAPPRIS P3 TSL 1 (best) BASIC19.41■□□□□ 0.7
HDAC3O15379 CELF6-202ENST00000395258 1741 ntTSL 5 BASIC19.41■□□□□ 0.7
HDAC3O15379 SLC1A6-210ENST00000600144 1735 ntTSL 1 (best) BASIC19.41■□□□□ 0.7
HDAC3O15379 PHKA1-204ENST00000373545 6173 ntTSL 5 BASIC19.41■□□□□ 0.7
HDAC3O15379 FOXN3-214ENST00000557258 2692 ntAPPRIS P3 TSL 1 (best) BASIC19.41■□□□□ 0.7
HDAC3O15379 DMRT2-204ENST00000382251 2292 ntAPPRIS P1 TSL 5 BASIC19.41■□□□□ 0.7
HDAC3O15379 ATIC-205ENST00000435675 2275 ntTSL 2 BASIC19.41■□□□□ 0.7
HDAC3O15379 WT1-205ENST00000452863 2768 ntAPPRIS ALT2 TSL 1 (best) BASIC19.41■□□□□ 0.7
HDAC3O15379 CDHR5-201ENST00000349570 2318 ntAPPRIS ALT2 TSL 1 (best) BASIC19.41■□□□□ 0.7
HDAC3O15379 LIPG-203ENST00000577628 2323 ntTSL 2 BASIC19.41■□□□□ 0.7
HDAC3O15379 SLC35B1-201ENST00000240333 1850 ntAPPRIS P1 TSL 1 (best) BASIC19.41■□□□□ 0.7
HDAC3O15379 RIMBP3B-201ENST00000620804 6105 ntAPPRIS P1 BASIC19.41■□□□□ 0.7
HDAC3O15379 KIF22-201ENST00000160827 2113 ntAPPRIS P1 TSL 1 (best) BASIC19.4■□□□□ 0.7
HDAC3O15379 PTGES2-AS1-201ENST00000443493 2100 ntBASIC19.4■□□□□ 0.7
HDAC3O15379 TULP1-201ENST00000229771 2162 ntAPPRIS P2 TSL 1 (best) BASIC19.4■□□□□ 0.7
HDAC3O15379 PTOV1-AS1-201ENST00000596521 2155 ntTSL 1 (best) BASIC19.4■□□□□ 0.7
HDAC3O15379 KSR1-205ENST00000509603 2731 ntAPPRIS ALT2 TSL 5 BASIC19.4■□□□□ 0.7
HDAC3O15379 PCBP3-206ENST00000400314 2202 ntAPPRIS P2 TSL 5 BASIC19.4■□□□□ 0.7
HDAC3O15379 PRR14-203ENST00000542965 2316 ntAPPRIS P1 TSL 1 (best) BASIC19.4■□□□□ 0.7
HDAC3O15379 KLHL29-203ENST00000486442 5287 ntAPPRIS P1 TSL 5 BASIC19.4■□□□□ 0.7
HDAC3O15379 EIF2B4-201ENST00000347454 1792 ntAPPRIS P3 TSL 1 (best) BASIC19.4■□□□□ 0.7
HDAC3O15379 MAPK9-208ENST00000455781 4336 ntAPPRIS ALT1 TSL 2 BASIC19.4■□□□□ 0.7
HDAC3O15379 MEN1-208ENST00000394374 3155 ntAPPRIS P3 TSL 5 BASIC19.4■□□□□ 0.7
HDAC3O15379 C5orf38-201ENST00000334000 890 ntAPPRIS P3 TSL 1 (best) BASIC19.4■□□□□ 0.7
HDAC3O15379 COL19A1-203ENST00000478620 589 ntTSL 1 (best) BASIC19.4■□□□□ 0.7
HDAC3O15379 AC007993.2-201ENST00000592842 521 ntTSL 4 BASIC19.4■□□□□ 0.7
HDAC3O15379 CBR1-205ENST00000530908 1924 ntTSL 1 (best) BASIC19.4■□□□□ 0.7
HDAC3O15379 AC138356.1-201ENST00000330539 2086 ntTSL 2 BASIC19.4■□□□□ 0.7
HDAC3O15379 GPR31-201ENST00000366834 2059 ntAPPRIS P1 BASIC19.4■□□□□ 0.7
HDAC3O15379 FAM129C-208ENST00000599164 2073 ntAPPRIS ALT2 TSL 2 BASIC19.4■□□□□ 0.7
HDAC3O15379 GPR3-201ENST00000374024 2115 ntAPPRIS P1 TSL 1 (best) BASIC19.4■□□□□ 0.7
HDAC3O15379 HMGA1-205ENST00000447654 2159 ntAPPRIS P4 TSL 1 (best) BASIC19.4■□□□□ 0.7
HDAC3O15379 LEMD2-201ENST00000293760 2958 ntAPPRIS P1 TSL 1 (best) BASIC19.4■□□□□ 0.7
HDAC3O15379 ECE1-205ENST00000436918 2328 ntTSL 2 BASIC19.4■□□□□ 0.7
HDAC3O15379 DUT-202ENST00000455976 1935 ntAPPRIS P1 TSL 1 (best) BASIC19.39■□□□□ 0.7
HDAC3O15379 C1orf198-201ENST00000366663 3858 ntAPPRIS P3 TSL 1 (best) BASIC19.39■□□□□ 0.7
Retrieved 100 of 98,524 protein–RNA pairs in 26.3 ms