Protein–RNA interactions for Protein: O00560

SDCBP, Syntenin-1, humanhuman

Predicted RBP Predictions only

Length 298 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SDCBPO00560 NHLH2-201ENST00000320238 2512 ntAPPRIS P1 TSL 1 (best) BASIC16.95■□□□□ 0.3
SDCBPO00560 IRGQ-205ENST00000602269 2210 ntAPPRIS P1 TSL 1 (best) BASIC16.95■□□□□ 0.3
SDCBPO00560 CBR1-201ENST00000290349 1293 ntAPPRIS P1 TSL 1 (best) BASIC16.95■□□□□ 0.3
SDCBPO00560 MRPL37-201ENST00000336230 1179 ntTSL 1 (best) BASIC16.95■□□□□ 0.3
SDCBPO00560 MAP1LC3A-202ENST00000374837 961 ntTSL 3 BASIC16.95■□□□□ 0.3
SDCBPO00560 SPOCK2-203ENST00000412663 1284 ntTSL 5 BASIC16.95■□□□□ 0.3
SDCBPO00560 LINC01942-201ENST00000521373 513 ntTSL 4 BASIC16.95■□□□□ 0.3
SDCBPO00560 SLC7A5P1-201ENST00000568957 537 ntBASIC16.95■□□□□ 0.3
SDCBPO00560 KRT18P61-201ENST00000585825 1298 ntBASIC16.95■□□□□ 0.3
SDCBPO00560 DM1-AS-203ENST00000590076 730 ntTSL 4 BASIC16.95■□□□□ 0.3
SDCBPO00560 AC087623.3-201ENST00000607047 1098 ntBASIC16.95■□□□□ 0.3
SDCBPO00560 DISC1-224ENST00000639374 1071 ntAPPRIS ALT2 TSL 1 (best) BASIC16.95■□□□□ 0.3
SDCBPO00560 AL691432.2-201ENST00000607222 2038 ntBASIC16.95■□□□□ 0.3
SDCBPO00560 P3H4-201ENST00000355468 2791 ntAPPRIS P2 TSL 2 BASIC16.95■□□□□ 0.3
SDCBPO00560 TMEM51-201ENST00000376008 1931 ntAPPRIS P1 TSL 2 BASIC16.95■□□□□ 0.3
SDCBPO00560 NECAB1-201ENST00000417640 5289 ntAPPRIS P1 TSL 1 (best) BASIC16.95■□□□□ 0.3
SDCBPO00560 MATK-215ENST00000619596 1740 ntAPPRIS P4 TSL 2 BASIC16.95■□□□□ 0.3
SDCBPO00560 EPS8L1-203ENST00000540810 2360 ntTSL 2 BASIC16.95■□□□□ 0.3
SDCBPO00560 FAM239A-202ENST00000438107 2155 ntTSL 5 BASIC16.95■□□□□ 0.3
SDCBPO00560 GLB1-201ENST00000307363 2616 ntAPPRIS P4 TSL 1 (best) BASIC16.95■□□□□ 0.3
SDCBPO00560 ZSWIM5-201ENST00000359600 5819 ntAPPRIS P1 TSL 1 (best) BASIC16.95■□□□□ 0.3
SDCBPO00560 ZKSCAN7-205ENST00000426540 2791 ntAPPRIS P1 TSL 2 BASIC16.94■□□□□ 0.3
SDCBPO00560 SLC27A1-204ENST00000598424 2681 ntTSL 2 BASIC16.94■□□□□ 0.3
SDCBPO00560 OSTM1-201ENST00000193322 4467 ntAPPRIS P1 TSL 1 (best) BASIC16.94■□□□□ 0.3
SDCBPO00560 PAX1-205ENST00000613128 5352 ntAPPRIS ALT2 TSL 1 (best) BASIC16.94■□□□□ 0.3
SDCBPO00560 FOXL2-201ENST00000330315 2917 ntAPPRIS P1 BASIC16.94■□□□□ 0.3
SDCBPO00560 DCPS-201ENST00000263579 1479 ntAPPRIS P1 TSL 1 (best) BASIC16.94■□□□□ 0.3
SDCBPO00560 EMC7-201ENST00000256545 1155 ntAPPRIS P1 TSL 1 (best) BASIC16.94■□□□□ 0.3
SDCBPO00560 HIST2H2AC-201ENST00000331380 390 ntAPPRIS P1 BASIC16.94■□□□□ 0.3
SDCBPO00560 PARP1-202ENST00000366792 553 ntTSL 3 BASIC16.94■□□□□ 0.3
SDCBPO00560 CENPVL3-201ENST00000417339 864 ntAPPRIS P1 BASIC16.94■□□□□ 0.3
SDCBPO00560 ATPIF1-203ENST00000468425 539 ntTSL 2 BASIC16.94■□□□□ 0.3
SDCBPO00560 LINC02199-202ENST00000510067 1008 ntTSL 2 BASIC16.94■□□□□ 0.3
SDCBPO00560 FRMD8-208ENST00000531296 366 ntTSL 1 (best) BASIC16.94■□□□□ 0.3
SDCBPO00560 ABCC6P2-202ENST00000542005 706 ntTSL 1 (best) BASIC16.94■□□□□ 0.3
SDCBPO00560 SNAP23-214ENST00000567094 834 ntTSL 3 BASIC16.94■□□□□ 0.3
SDCBPO00560 ABCC6-204ENST00000575728 714 ntTSL 1 (best) BASIC16.94■□□□□ 0.3
SDCBPO00560 AP005205.2-201ENST00000577327 491 ntTSL 2 BASIC16.94■□□□□ 0.3
SDCBPO00560 SLC35A3-222ENST00000640715 1989 ntTSL 5 BASIC16.94■□□□□ 0.3
SDCBPO00560 TBX21-201ENST00000177694 2572 ntAPPRIS P1 TSL 1 (best) BASIC16.94■□□□□ 0.3
SDCBPO00560 DDAH1-205ENST00000539042 1519 ntAPPRIS P1 TSL 5 BASIC16.94■□□□□ 0.3
SDCBPO00560 RILPL2-201ENST00000280571 6141 ntAPPRIS P1 TSL 1 (best) BASIC16.94■□□□□ 0.3
SDCBPO00560 SIX5-201ENST00000317578 3318 ntAPPRIS P2 TSL 1 (best) BASIC16.94■□□□□ 0.3
SDCBPO00560 RBM17P2-201ENST00000616397 1405 ntBASIC16.94■□□□□ 0.3
SDCBPO00560 BEST4-201ENST00000372207 2047 ntAPPRIS P1 TSL 1 (best) BASIC16.94■□□□□ 0.3
SDCBPO00560 CTBP2-205ENST00000411419 2036 ntAPPRIS P1 TSL 1 (best) BASIC16.94■□□□□ 0.3
SDCBPO00560 RHOA-202ENST00000418115 2031 ntAPPRIS P1 TSL 1 (best) BASIC16.94■□□□□ 0.3
SDCBPO00560 BTBD9-205ENST00000419706 2034 ntTSL 1 (best) BASIC16.94■□□□□ 0.3
SDCBPO00560 SCARF2-202ENST00000622235 3232 ntAPPRIS ALT2 TSL 1 (best) BASIC16.94■□□□□ 0.3
SDCBPO00560 ZMYND11-210ENST00000403354 1664 ntTSL 5 BASIC16.94■□□□□ 0.3
SDCBPO00560 DPP3P2-201ENST00000416030 1696 ntBASIC16.94■□□□□ 0.3
SDCBPO00560 UBE2QL1-201ENST00000399816 4317 ntAPPRIS P1 TSL 1 (best) BASIC16.94■□□□□ 0.3
SDCBPO00560 DOK2-201ENST00000276420 1936 ntAPPRIS P1 TSL 1 (best) BASIC16.94■□□□□ 0.3
SDCBPO00560 NAP1L4-212ENST00000526115 1941 ntTSL 2 BASIC16.94■□□□□ 0.3
SDCBPO00560 AC019069.1-201ENST00000610008 1333 ntBASIC16.94■□□□□ 0.3
SDCBPO00560 BAG5-201ENST00000299204 4848 ntAPPRIS P1 TSL 1 (best) BASIC16.94■□□□□ 0.3
SDCBPO00560 IRAK3-203ENST00000545837 1579 ntTSL 1 (best) BASIC16.94■□□□□ 0.3
SDCBPO00560 PCDHGB3-202ENST00000618934 2445 ntAPPRIS P1 BASIC16.94■□□□□ 0.3
SDCBPO00560 KCNH2-202ENST00000330883 3267 ntTSL 1 (best) BASIC16.94■□□□□ 0.3
SDCBPO00560 GSDMD-212ENST00000533063 1800 ntAPPRIS ALT2 TSL 1 (best) BASIC16.93■□□□□ 0.3
SDCBPO00560 HTR1E-201ENST00000305344 2052 ntAPPRIS P1 TSL 1 (best) BASIC16.93■□□□□ 0.3
SDCBPO00560 TOR1A-201ENST00000351698 2076 ntAPPRIS P1 TSL 1 (best) BASIC16.93■□□□□ 0.3
SDCBPO00560 LSM12-201ENST00000293406 2308 ntAPPRIS P1 TSL 1 (best) BASIC16.93■□□□□ 0.3
SDCBPO00560 SPIRE2-201ENST00000378247 3235 ntAPPRIS P2 TSL 1 (best) BASIC16.93■□□□□ 0.3
SDCBPO00560 SCARF2-203ENST00000623402 3248 ntAPPRIS P3 TSL 1 (best) BASIC16.93■□□□□ 0.3
SDCBPO00560 UBE2F-205ENST00000414443 2100 ntTSL 2 BASIC16.93■□□□□ 0.3
SDCBPO00560 STX18-205ENST00000505286 1380 ntTSL 1 (best) BASIC16.93■□□□□ 0.3
SDCBPO00560 AC005224.2-201ENST00000571192 1885 ntTSL 2 BASIC16.93■□□□□ 0.3
SDCBPO00560 GABRD-213ENST00000640067 1632 ntAPPRIS ALT2 TSL 5 BASIC16.93■□□□□ 0.3
SDCBPO00560 WFIKKN1-201ENST00000319070 2028 ntAPPRIS P1 TSL 1 (best) BASIC16.93■□□□□ 0.3
SDCBPO00560 HCFC1R1-201ENST00000248089 965 ntTSL 1 (best) BASIC16.93■□□□□ 0.3
SDCBPO00560 TNFRSF18-202ENST00000379265 705 ntAPPRIS ALT2 TSL 1 (best) BASIC16.93■□□□□ 0.3
SDCBPO00560 AL121761.1-202ENST00000412571 415 ntTSL 2 BASIC16.93■□□□□ 0.3
SDCBPO00560 INTS11-205ENST00000429572 1104 ntTSL 2 BASIC16.93■□□□□ 0.3
SDCBPO00560 AC009086.2-201ENST00000449759 610 ntAPPRIS P1 TSL 3 BASIC16.93■□□□□ 0.3
SDCBPO00560 ABHD14A-204ENST00000491470 674 ntTSL 3 BASIC16.93■□□□□ 0.3
SDCBPO00560 HCFC1R1-207ENST00000574980 845 ntTSL 5 BASIC16.93■□□□□ 0.3
SDCBPO00560 CIRBP-222ENST00000589235 1073 ntAPPRIS ALT1 TSL 2 BASIC16.93■□□□□ 0.3
SDCBPO00560 AC243732.1-201ENST00000612648 864 ntBASIC16.93■□□□□ 0.3
SDCBPO00560 H2AFB3-201ENST00000615853 591 ntAPPRIS P1 BASIC16.93■□□□□ 0.3
SDCBPO00560 ZNF213-201ENST00000396878 3313 ntAPPRIS P1 TSL 1 (best) BASIC16.93■□□□□ 0.3
SDCBPO00560 AC107959.1-202ENST00000502083 1945 ntTSL 1 (best) BASIC16.93■□□□□ 0.3
SDCBPO00560 VRK2-207ENST00000440705 1676 ntAPPRIS ALT2 TSL 1 (best) BASIC16.93■□□□□ 0.3
SDCBPO00560 SLMAP-201ENST00000295951 5433 ntAPPRIS P1 TSL 5 BASIC16.93■□□□□ 0.3
SDCBPO00560 CPLX3-201ENST00000395018 2082 ntAPPRIS P1 TSL 1 (best) BASIC16.93■□□□□ 0.3
SDCBPO00560 ADAMTS8-201ENST00000257359 4010 ntAPPRIS P1 TSL 1 (best) BASIC16.93■□□□□ 0.3
SDCBPO00560 LYSMD4-202ENST00000344791 2885 ntTSL 1 (best) BASIC16.93■□□□□ 0.3
SDCBPO00560 FAM110D-201ENST00000374268 2858 ntAPPRIS P1 TSL 1 (best) BASIC16.93■□□□□ 0.3
SDCBPO00560 DYNLT3-201ENST00000378578 2217 ntAPPRIS P1 TSL 1 (best) BASIC16.93■□□□□ 0.3
SDCBPO00560 FDFT1-226ENST00000623368 2368 ntTSL 2 BASIC16.93■□□□□ 0.3
SDCBPO00560 PAGR1-201ENST00000320330 1702 ntAPPRIS P1 TSL 1 (best) BASIC16.93■□□□□ 0.3
SDCBPO00560 CPXM2-204ENST00000615851 2512 ntTSL 5 BASIC16.93■□□□□ 0.3
SDCBPO00560 BX322557.1-202ENST00000400362 1460 ntTSL 1 (best) BASIC16.93■□□□□ 0.3
SDCBPO00560 KIF16B-206ENST00000636835 5109 ntAPPRIS ALT2 TSL 1 (best) BASIC16.92■□□□□ 0.3
SDCBPO00560 MTFR1L-203ENST00000374303 2004 ntAPPRIS P1 TSL 1 (best) BASIC16.92■□□□□ 0.3
SDCBPO00560 AC093627.4-201ENST00000484550 5008 ntTSL 2 BASIC16.92■□□□□ 0.3
SDCBPO00560 RBM45-201ENST00000286070 1785 ntAPPRIS P2 TSL 1 (best) BASIC16.92■□□□□ 0.3
SDCBPO00560 KDF1-201ENST00000320567 1793 ntAPPRIS P1 TSL 2 BASIC16.92■□□□□ 0.3
SDCBPO00560 H19-201ENST00000411754 1788 ntTSL 5 BASIC16.92■□□□□ 0.3
SDCBPO00560 COL9A3-201ENST00000343916 2485 ntAPPRIS P1 TSL 1 (best) BASIC16.92■□□□□ 0.3
Retrieved 100 of 98,524 protein–RNA pairs in 29.4 ms