Protein–RNA interactions for Protein: O00479

HMGN4, High mobility group nucleosome-binding domain-containing protein 4, humanhuman

Predictions only

Length 90 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HMGN4O00479 GNAI1-201ENST00000351004 3347 ntAPPRIS P1 TSL 1 (best) BASIC18.6■□□□□ 0.57
HMGN4O00479 TRAPPC5-204ENST00000596148 5498 ntAPPRIS P1 TSL 1 (best) BASIC18.6■□□□□ 0.57
HMGN4O00479 CRTC1-204ENST00000601916 1834 ntTSL 5 BASIC18.6■□□□□ 0.57
HMGN4O00479 KRT1-201ENST00000252244 2451 ntAPPRIS P1 TSL 1 (best) BASIC18.6■□□□□ 0.57
HMGN4O00479 PCID2-203ENST00000375457 2372 ntTSL 1 (best) BASIC18.6■□□□□ 0.57
HMGN4O00479 LIMS2-207ENST00000409808 2315 ntAPPRIS ALT1 TSL 5 BASIC18.6■□□□□ 0.57
HMGN4O00479 ZNF579-201ENST00000325421 2899 ntAPPRIS P1 TSL 2 BASIC18.6■□□□□ 0.57
HMGN4O00479 NPDC1-202ENST00000371601 1494 ntAPPRIS P2 TSL 1 (best) BASIC18.59■□□□□ 0.57
HMGN4O00479 MARK2-204ENST00000402010 4728 ntAPPRIS ALT2 TSL 1 (best) BASIC18.59■□□□□ 0.57
HMGN4O00479 FOXC2-201ENST00000320354 2478 ntAPPRIS P1 BASIC18.59■□□□□ 0.57
HMGN4O00479 THOP1-202ENST00000395212 1877 ntTSL 2 BASIC18.59■□□□□ 0.57
HMGN4O00479 SDHA-201ENST00000264932 2390 ntAPPRIS P1 TSL 1 (best) BASIC18.59■□□□□ 0.57
HMGN4O00479 NETO1-207ENST00000583169 2357 ntAPPRIS P1 TSL 1 (best) BASIC18.59■□□□□ 0.57
HMGN4O00479 RNF8-204ENST00000469731 1800 ntTSL 5 BASIC18.59■□□□□ 0.57
HMGN4O00479 NEDD8-201ENST00000250495 708 ntAPPRIS P1 TSL 1 (best) BASIC18.59■□□□□ 0.57
HMGN4O00479 AL512625.2-201ENST00000417533 625 ntBASIC18.59■□□□□ 0.57
HMGN4O00479 LINC01117-201ENST00000443670 699 ntTSL 5 BASIC18.59■□□□□ 0.57
HMGN4O00479 SUZ12P1-202ENST00000578070 929 ntTSL 5 BASIC18.59■□□□□ 0.57
HMGN4O00479 AC005181.1-201ENST00000604782 1256 ntBASIC18.59■□□□□ 0.57
HMGN4O00479 AL589743.5-201ENST00000616611 1050 ntBASIC18.59■□□□□ 0.57
HMGN4O00479 AC092437.1-201ENST00000624794 1048 ntBASIC18.59■□□□□ 0.57
HMGN4O00479 FNDC5-207ENST00000640867 639 ntAPPRIS P2 TSL 2 BASIC18.59■□□□□ 0.57
HMGN4O00479 NEU4-201ENST00000325935 2288 ntTSL 1 (best) BASIC18.59■□□□□ 0.57
HMGN4O00479 TINAGL1-201ENST00000271064 2187 ntAPPRIS P3 TSL 1 (best) BASIC18.59■□□□□ 0.57
HMGN4O00479 AKAP8L-201ENST00000397410 2146 ntAPPRIS P1 TSL 1 (best) BASIC18.59■□□□□ 0.57
HMGN4O00479 NEURL4-203ENST00000570460 4890 ntAPPRIS ALT2 TSL 5 BASIC18.59■□□□□ 0.57
HMGN4O00479 STARD10-201ENST00000334805 1963 ntAPPRIS P1 TSL 1 (best) BASIC18.59■□□□□ 0.57
HMGN4O00479 DMAP1-202ENST00000361745 1545 ntAPPRIS P1 TSL 1 (best) BASIC18.59■□□□□ 0.57
HMGN4O00479 MOB3C-202ENST00000319928 2822 ntAPPRIS P1 TSL 2 BASIC18.59■□□□□ 0.57
HMGN4O00479 CSPG5-201ENST00000264723 4080 ntAPPRIS P3 TSL 1 (best) BASIC18.59■□□□□ 0.57
HMGN4O00479 MAP3K15-201ENST00000338883 4012 ntAPPRIS P1 TSL 5 BASIC18.58■□□□□ 0.57
HMGN4O00479 AC116562.4-201ENST00000641316 2276 ntBASIC18.58■□□□□ 0.57
HMGN4O00479 KRT16P6-202ENST00000425692 1426 ntBASIC18.58■□□□□ 0.57
HMGN4O00479 RHBDD3-201ENST00000216085 1794 ntAPPRIS P1 TSL 1 (best) BASIC18.58■□□□□ 0.57
HMGN4O00479 RWDD4-206ENST00000512740 1393 ntTSL 5 BASIC18.58■□□□□ 0.57
HMGN4O00479 CD58-203ENST00000457047 1328 ntAPPRIS ALT2 TSL 1 (best) BASIC18.58■□□□□ 0.57
HMGN4O00479 PIGQ-206ENST00000422307 2052 ntTSL 3 BASIC18.58■□□□□ 0.57
HMGN4O00479 PRTN3-201ENST00000234347 1026 ntAPPRIS P1 TSL 1 (best) BASIC18.58■□□□□ 0.56
HMGN4O00479 OLFM1-206ENST00000371799 961 ntTSL 1 (best) BASIC18.58■□□□□ 0.56
HMGN4O00479 PLAC9-202ENST00000372267 472 ntAPPRIS ALT2 TSL 3 BASIC18.58■□□□□ 0.56
HMGN4O00479 GPX1-202ENST00000419783 1146 ntAPPRIS P2 TSL 1 (best) BASIC18.58■□□□□ 0.56
HMGN4O00479 C19orf81-201ENST00000425202 765 ntAPPRIS P2 TSL 5 BASIC18.58■□□□□ 0.56
HMGN4O00479 ANAPC11-212ENST00000577425 603 ntTSL 3 BASIC18.58■□□□□ 0.56
HMGN4O00479 CAPNS1-205ENST00000588780 1035 ntAPPRIS ALT2 TSL 5 BASIC18.58■□□□□ 0.56
HMGN4O00479 PTGIR-205ENST00000597185 775 ntTSL 3 BASIC18.58■□□□□ 0.56
HMGN4O00479 TRIM2-212ENST00000632856 656 ntTSL 3 BASIC18.58■□□□□ 0.56
HMGN4O00479 ACOT2-205ENST00000622407 1604 ntAPPRIS ALT1 TSL 1 (best) BASIC18.58■□□□□ 0.56
HMGN4O00479 NAPSA-201ENST00000253719 1548 ntAPPRIS P1 TSL 1 (best) BASIC18.58■□□□□ 0.56
HMGN4O00479 KRT17P1-201ENST00000399211 1546 ntBASIC18.58■□□□□ 0.56
HMGN4O00479 ADAMTS10-205ENST00000595838 2458 ntTSL 2 BASIC18.58■□□□□ 0.56
HMGN4O00479 TREX1-205ENST00000625293 1783 ntBASIC18.58■□□□□ 0.56
HMGN4O00479 SNX18-203ENST00000381410 5218 ntAPPRIS P1 TSL 1 (best) BASIC18.57■□□□□ 0.56
HMGN4O00479 DVL1-204ENST00000610709 2268 ntTSL 2 BASIC18.57■□□□□ 0.56
HMGN4O00479 DLG3-201ENST00000194900 6112 ntAPPRIS ALT2 TSL 5 BASIC18.57■□□□□ 0.56
HMGN4O00479 FAM76B-204ENST00000536839 2546 ntAPPRIS ALT1 TSL 5 BASIC18.57■□□□□ 0.56
HMGN4O00479 KLHL31-202ENST00000407079 1905 ntAPPRIS P1 TSL 1 (best) BASIC18.57■□□□□ 0.56
HMGN4O00479 ALKBH7-201ENST00000245812 1332 ntAPPRIS P1 TSL 1 (best) BASIC18.57■□□□□ 0.56
HMGN4O00479 ETV2-202ENST00000379026 1571 ntAPPRIS ALT2 TSL 2 BASIC18.57■□□□□ 0.56
HMGN4O00479 AC009237.14-201ENST00000609975 1594 ntBASIC18.57■□□□□ 0.56
HMGN4O00479 UNC50-201ENST00000357765 1143 ntAPPRIS P1 TSL 1 (best) BASIC18.57■□□□□ 0.56
HMGN4O00479 MELTF-AS1-202ENST00000415244 951 ntTSL 1 (best) BASIC18.57■□□□□ 0.56
HMGN4O00479 LINC01956-201ENST00000557729 695 ntTSL 5 BASIC18.57■□□□□ 0.56
HMGN4O00479 CIRBP-211ENST00000586773 942 ntAPPRIS ALT1 TSL 2 BASIC18.57■□□□□ 0.56
HMGN4O00479 BRWD1-AS2-201ENST00000603064 1028 ntBASIC18.57■□□□□ 0.56
HMGN4O00479 SSH1-209ENST00000551165 2354 ntAPPRIS ALT2 TSL 1 (best) BASIC18.57■□□□□ 0.56
HMGN4O00479 DHRS7-201ENST00000216500 2322 ntAPPRIS P1 TSL 5 BASIC18.57■□□□□ 0.56
HMGN4O00479 MFSD10-211ENST00000514800 1776 ntTSL 5 BASIC18.57■□□□□ 0.56
HMGN4O00479 ETV7-206ENST00000615781 1776 ntTSL 1 (best) BASIC18.57■□□□□ 0.56
HMGN4O00479 ISLR2-204ENST00000453268 2812 ntAPPRIS P1 TSL 1 (best) BASIC18.57■□□□□ 0.56
HMGN4O00479 LPAR2-202ENST00000542587 2546 ntAPPRIS P1 TSL 2 BASIC18.57■□□□□ 0.56
HMGN4O00479 SPNS1-201ENST00000311008 2208 ntAPPRIS P1 TSL 1 (best) BASIC18.57■□□□□ 0.56
HMGN4O00479 NSMF-206ENST00000371475 2987 ntAPPRIS ALT1 TSL 1 (best) BASIC18.57■□□□□ 0.56
HMGN4O00479 ARHGAP27-201ENST00000290470 1376 ntTSL 1 (best) BASIC18.56■□□□□ 0.56
HMGN4O00479 CLN8-208ENST00000635751 1807 ntAPPRIS P1 TSL 5 BASIC18.56■□□□□ 0.56
HMGN4O00479 COL13A1-201ENST00000354547 3027 ntAPPRIS ALT2 TSL 5 BASIC18.56■□□□□ 0.56
HMGN4O00479 SLC6A11-202ENST00000454147 2794 ntTSL 1 (best) BASIC18.56■□□□□ 0.56
HMGN4O00479 ARPP19-201ENST00000249822 5301 ntAPPRIS P1 TSL 1 (best) BASIC18.56■□□□□ 0.56
HMGN4O00479 PGPEP1L-201ENST00000378919 995 ntTSL 1 (best) BASIC18.56■□□□□ 0.56
HMGN4O00479 CLDN3-201ENST00000395145 1274 ntAPPRIS P1 BASIC18.56■□□□□ 0.56
HMGN4O00479 ZCCHC9-204ENST00000438268 1248 ntAPPRIS P1 TSL 1 (best) BASIC18.56■□□□□ 0.56
HMGN4O00479 HAGHL-213ENST00000564545 663 ntTSL 3 BASIC18.56■□□□□ 0.56
HMGN4O00479 C2orf69P4-201ENST00000565394 541 ntBASIC18.56■□□□□ 0.56
HMGN4O00479 ZNF263-205ENST00000574253 1139 ntTSL 2 BASIC18.56■□□□□ 0.56
HMGN4O00479 LIMD2-202ENST00000578061 756 ntAPPRIS P1 TSL 2 BASIC18.56■□□□□ 0.56
HMGN4O00479 MFSD14C-203ENST00000602917 786 ntAPPRIS P5 TSL 1 (best) BASIC18.56■□□□□ 0.56
HMGN4O00479 AC000035.1-201ENST00000634116 343 ntTSL 5 BASIC18.56■□□□□ 0.56
HMGN4O00479 CRTC1-203ENST00000594658 2384 ntTSL 1 (best) BASIC18.56■□□□□ 0.56
HMGN4O00479 TNFRSF25-203ENST00000351959 1441 ntAPPRIS ALT2 TSL 1 (best) BASIC18.56■□□□□ 0.56
HMGN4O00479 PRR16-201ENST00000379551 1826 ntTSL 1 (best) BASIC18.56■□□□□ 0.56
HMGN4O00479 POLI-202ENST00000406285 2030 ntTSL 2 BASIC18.56■□□□□ 0.56
HMGN4O00479 ORAI3-204ENST00000566237 1393 ntTSL 5 BASIC18.55■□□□□ 0.56
HMGN4O00479 PSMD8-201ENST00000215071 1553 ntAPPRIS P1 TSL 1 (best) BASIC18.55■□□□□ 0.56
HMGN4O00479 DISC1-202ENST00000317586 2636 ntAPPRIS ALT2 TSL 1 (best) BASIC18.55■□□□□ 0.56
HMGN4O00479 FAM216A-201ENST00000377673 1582 ntAPPRIS P1 TSL 1 (best) BASIC18.55■□□□□ 0.56
HMGN4O00479 PANK1-201ENST00000307534 6976 ntTSL 1 (best) BASIC18.55■□□□□ 0.56
HMGN4O00479 RGS3-232ENST00000620489 1503 ntTSL 1 (best) BASIC18.55■□□□□ 0.56
HMGN4O00479 RNH1-206ENST00000438658 1725 ntAPPRIS P1 TSL 1 (best) BASIC18.55■□□□□ 0.56
HMGN4O00479 FAM57B-204ENST00000564806 1710 ntTSL 2 BASIC18.55■□□□□ 0.56
HMGN4O00479 MOK-201ENST00000361847 1940 ntAPPRIS P3 TSL 1 (best) BASIC18.55■□□□□ 0.56
HMGN4O00479 ADAD1-202ENST00000388724 1912 ntTSL 1 (best) BASIC18.55■□□□□ 0.56
Retrieved 100 of 98,524 protein–RNA pairs in 29.2 ms