Protein–RNA interactions for Protein: O00257

CBX4, E3 SUMO-protein ligase CBX4, humanhuman

Predictions only

Length 560 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CBX4O00257 RPS23-206ENST00000510210 1058 ntTSL 2 BASIC20.43■□□□□ 0.86
CBX4O00257 ZNF688-205ENST00000563707 244 ntTSL 3 BASIC20.43■□□□□ 0.86
CBX4O00257 AP006294.2-201ENST00000641667 209 ntBASIC20.43■□□□□ 0.86
CBX4O00257 SPATA22-210ENST00000573128 1704 ntAPPRIS P1 TSL 1 (best) BASIC20.43■□□□□ 0.86
CBX4O00257 IRX3-201ENST00000329734 2601 ntAPPRIS P1 TSL 1 (best) BASIC20.43■□□□□ 0.86
CBX4O00257 RNF32-207ENST00000405335 1938 ntAPPRIS P1 TSL 5 BASIC20.43■□□□□ 0.86
CBX4O00257 B4GALNT1-208ENST00000550764 1967 ntTSL 1 (best) BASIC20.43■□□□□ 0.86
CBX4O00257 RHOA-202ENST00000418115 2031 ntAPPRIS P1 TSL 1 (best) BASIC20.43■□□□□ 0.86
CBX4O00257 ABLIM2-205ENST00000428004 2573 ntTSL 1 (best) BASIC20.42■□□□□ 0.86
CBX4O00257 KLHDC1-201ENST00000359332 2691 ntAPPRIS P1 TSL 1 (best) BASIC20.42■□□□□ 0.86
CBX4O00257 KDELR3-201ENST00000216014 1728 ntAPPRIS P1 TSL 1 (best) BASIC20.42■□□□□ 0.86
CBX4O00257 PABPC4-204ENST00000372862 2470 ntTSL 5 BASIC20.42■□□□□ 0.86
CBX4O00257 C3orf33-201ENST00000340171 1884 ntTSL 1 (best) BASIC20.42■□□□□ 0.86
CBX4O00257 ZNF510-203ENST00000375231 5616 ntAPPRIS P1 TSL 1 (best) BASIC20.42■□□□□ 0.86
CBX4O00257 AL365295.1-202ENST00000456100 562 ntTSL 4 BASIC20.42■□□□□ 0.86
CBX4O00257 NDUFB2-203ENST00000461457 559 ntTSL 3 BASIC20.42■□□□□ 0.86
CBX4O00257 AC009065.4-203ENST00000562838 535 ntTSL 2 BASIC20.42■□□□□ 0.86
CBX4O00257 HAGHL-213ENST00000564545 663 ntTSL 3 BASIC20.42■□□□□ 0.86
CBX4O00257 ANAPC11-223ENST00000612413 964 ntTSL 3 BASIC20.42■□□□□ 0.86
CBX4O00257 CD24-208ENST00000622315 825 ntAPPRIS ALT2 TSL 2 BASIC20.42■□□□□ 0.86
CBX4O00257 C17orf67-201ENST00000397861 2013 ntAPPRIS P1 TSL 1 (best) BASIC20.42■□□□□ 0.86
CBX4O00257 MARK2-204ENST00000402010 4728 ntAPPRIS ALT2 TSL 1 (best) BASIC20.42■□□□□ 0.86
CBX4O00257 OLA1-204ENST00000409546 2071 ntTSL 5 BASIC20.42■□□□□ 0.86
CBX4O00257 SDHAF3-202ENST00000432641 2060 ntAPPRIS P1 TSL 1 (best) BASIC20.42■□□□□ 0.86
CBX4O00257 DBNL-207ENST00000440166 1415 ntTSL 2 BASIC20.42■□□□□ 0.86
CBX4O00257 ETV7-205ENST00000538992 1434 ntTSL 2 BASIC20.42■□□□□ 0.86
CBX4O00257 PCSK6-217ENST00000618548 4269 ntAPPRIS ALT2 TSL 1 (best) BASIC20.42■□□□□ 0.86
CBX4O00257 SNAP23-202ENST00000349777 2480 ntTSL 2 BASIC20.42■□□□□ 0.86
CBX4O00257 ZNF302-215ENST00000627982 1723 ntAPPRIS ALT2 TSL 5 BASIC20.41■□□□□ 0.86
CBX4O00257 D2HGDH-201ENST00000321264 2617 ntAPPRIS P1 TSL 1 (best) BASIC20.41■□□□□ 0.86
CBX4O00257 CCNYL1-202ENST00000339882 2619 ntAPPRIS P1 TSL 1 (best) BASIC20.41■□□□□ 0.86
CBX4O00257 AVPR2-202ENST00000358927 1763 ntAPPRIS P1 TSL 5 BASIC20.41■□□□□ 0.86
CBX4O00257 RLBP1-201ENST00000268125 1810 ntAPPRIS P1 TSL 1 (best) BASIC20.41■□□□□ 0.86
CBX4O00257 GPAA1-201ENST00000355091 2078 ntAPPRIS P1 TSL 1 (best) BASIC20.41■□□□□ 0.86
CBX4O00257 FBLN5-202ENST00000342058 2123 ntAPPRIS P1 TSL 1 (best) BASIC20.41■□□□□ 0.86
CBX4O00257 ZNF331-202ENST00000411977 2248 ntAPPRIS P1 TSL 1 (best) BASIC20.41■□□□□ 0.86
CBX4O00257 IRX2-201ENST00000302057 2456 ntAPPRIS P1 TSL 1 (best) BASIC20.41■□□□□ 0.86
CBX4O00257 SBK1-201ENST00000341901 4992 ntAPPRIS P1 TSL 1 (best) BASIC20.41■□□□□ 0.86
CBX4O00257 OLFM1-202ENST00000277415 1014 ntTSL 1 (best) BASIC20.41■□□□□ 0.86
CBX4O00257 MTHFD1L-201ENST00000367307 1049 ntTSL 1 (best) BASIC20.41■□□□□ 0.86
CBX4O00257 PUSL1-201ENST00000379031 1287 ntAPPRIS P1 TSL 1 (best) BASIC20.41■□□□□ 0.86
CBX4O00257 EGFEM1P-209ENST00000502332 728 ntTSL 3 BASIC20.41■□□□□ 0.86
CBX4O00257 AC008443.1-203ENST00000505151 886 ntTSL 2 BASIC20.41■□□□□ 0.86
CBX4O00257 CAVIN3-203ENST00000530979 957 ntTSL 2 BASIC20.41■□□□□ 0.86
CBX4O00257 MMD2-204ENST00000612910 778 ntTSL 5 BASIC20.41■□□□□ 0.86
CBX4O00257 EEF1D-225ENST00000529272 1311 ntAPPRIS ALT2 TSL 2 BASIC20.41■□□□□ 0.86
CBX4O00257 PRRT4-207ENST00000535159 2897 ntAPPRIS P1 TSL 5 BASIC20.41■□□□□ 0.86
CBX4O00257 SCRN2-201ENST00000290216 1548 ntAPPRIS P1 TSL 1 (best) BASIC20.41■□□□□ 0.86
CBX4O00257 TSPAN3-210ENST00000561277 1592 ntTSL 5 BASIC20.41■□□□□ 0.86
CBX4O00257 NSDHL-201ENST00000370274 1929 ntAPPRIS P2 TSL 1 (best) BASIC20.41■□□□□ 0.86
CBX4O00257 POLD2-202ENST00000406581 2158 ntAPPRIS P1 TSL 2 BASIC20.41■□□□□ 0.86
CBX4O00257 AC243965.2-201ENST00000612576 2671 ntTSL 5 BASIC20.4■□□□□ 0.86
CBX4O00257 ANKRD2-201ENST00000298808 1350 ntTSL 1 (best) BASIC20.4■□□□□ 0.86
CBX4O00257 SLC22A17-202ENST00000354772 2238 ntAPPRIS ALT2 TSL 1 (best) BASIC20.4■□□□□ 0.86
CBX4O00257 FAM213A-202ENST00000372185 1723 ntTSL 2 BASIC20.4■□□□□ 0.86
CBX4O00257 DBNDD2-203ENST00000372710 1417 ntTSL 1 (best) BASIC20.4■□□□□ 0.86
CBX4O00257 FAM167B-201ENST00000373582 936 ntAPPRIS P1 TSL 1 (best) BASIC20.4■□□□□ 0.86
CBX4O00257 MRGPRE-201ENST00000389832 1409 ntAPPRIS P1 TSL 2 BASIC20.4■□□□□ 0.86
CBX4O00257 SNCA-203ENST00000394986 1420 ntAPPRIS P1 TSL 1 (best) BASIC20.4■□□□□ 0.86
CBX4O00257 XBP1-203ENST00000403532 1824 ntAPPRIS ALT1 TSL 3 BASIC20.4■□□□□ 0.86
CBX4O00257 IMPDH1-208ENST00000470772 1888 ntAPPRIS ALT1 TSL 5 BASIC20.4■□□□□ 0.86
CBX4O00257 THEM4-205ENST00000489410 643 ntTSL 2 BASIC20.4■□□□□ 0.86
CBX4O00257 AC010173.1-201ENST00000549023 1453 ntTSL 2 BASIC20.4■□□□□ 0.86
CBX4O00257 MIR381HG-201ENST00000553692 425 ntTSL 3 BASIC20.4■□□□□ 0.86
CBX4O00257 C14orf144-202ENST00000555282 854 ntTSL 3 BASIC20.4■□□□□ 0.86
CBX4O00257 AC233263.1-201ENST00000578059 224 ntBASIC20.4■□□□□ 0.86
CBX4O00257 CIRBP-213ENST00000587323 1092 ntTSL 5 BASIC20.4■□□□□ 0.86
CBX4O00257 NAT14-204ENST00000591590 1011 ntTSL 1 (best) BASIC20.4■□□□□ 0.86
CBX4O00257 AC069544.1-201ENST00000609399 999 ntBASIC20.4■□□□□ 0.86
CBX4O00257 MAP7-206ENST00000611373 2317 ntAPPRIS ALT2 TSL 5 BASIC20.4■□□□□ 0.86
CBX4O00257 OLIG2-202ENST00000382357 2578 ntAPPRIS P1 TSL 1 (best) BASIC20.4■□□□□ 0.86
CBX4O00257 LINC01006-201ENST00000333319 2292 ntBASIC20.39■□□□□ 0.86
CBX4O00257 ST3GAL5-222ENST00000638572 4431 ntAPPRIS P2 TSL 1 (best) BASIC20.39■□□□□ 0.86
CBX4O00257 NAP1L4-212ENST00000526115 1941 ntTSL 2 BASIC20.39■□□□□ 0.86
CBX4O00257 ACBD4-201ENST00000321854 1806 ntAPPRIS P1 TSL 1 (best) BASIC20.39■□□□□ 0.86
CBX4O00257 AC124283.5-201ENST00000624661 1809 ntBASIC20.39■□□□□ 0.86
CBX4O00257 ZBTB7A-201ENST00000322357 5422 ntAPPRIS P1 TSL 1 (best) BASIC20.39■□□□□ 0.85
CBX4O00257 DNTTIP1-201ENST00000372622 1290 ntAPPRIS P1 TSL 1 (best) BASIC20.39■□□□□ 0.85
CBX4O00257 RPS2P4-201ENST00000476944 856 ntBASIC20.39■□□□□ 0.85
CBX4O00257 RPH3AL-203ENST00000536489 1235 ntTSL 2 BASIC20.39■□□□□ 0.85
CBX4O00257 AL929601.1-201ENST00000551565 573 ntTSL 4 BASIC20.39■□□□□ 0.85
CBX4O00257 CERKL-205ENST00000409440 2425 ntTSL 2 BASIC20.39■□□□□ 0.85
CBX4O00257 T-202ENST00000366871 2250 ntTSL 1 (best) BASIC20.39■□□□□ 0.85
CBX4O00257 DYNLT3-201ENST00000378578 2217 ntAPPRIS P1 TSL 1 (best) BASIC20.39■□□□□ 0.85
CBX4O00257 AL512408.1-201ENST00000569378 2000 ntBASIC20.39■□□□□ 0.85
CBX4O00257 PFKFB3-202ENST00000360521 1964 ntAPPRIS P2 TSL 5 BASIC20.39■□□□□ 0.85
CBX4O00257 CACNB2-203ENST00000352115 1911 ntTSL 1 (best) BASIC20.39■□□□□ 0.85
CBX4O00257 GABARAPL3-202ENST00000624044 1851 ntBASIC20.39■□□□□ 0.85
CBX4O00257 NTN5-201ENST00000270235 1836 ntAPPRIS P1 TSL 1 (best) BASIC20.39■□□□□ 0.85
CBX4O00257 NUDT11-201ENST00000375992 2385 ntAPPRIS P1 TSL 1 (best) BASIC20.38■□□□□ 0.85
CBX4O00257 IL17RC-202ENST00000383812 2384 ntAPPRIS ALT2 TSL 1 (best) BASIC20.38■□□□□ 0.85
CBX4O00257 WT1-212ENST00000640146 1554 ntAPPRIS P3 TSL 1 (best) BASIC20.38■□□□□ 0.85
CBX4O00257 KMT5B-201ENST00000304363 5837 ntAPPRIS P1 TSL 5 BASIC20.38■□□□□ 0.85
CBX4O00257 GYG1-202ENST00000345003 2052 ntTSL 1 (best) BASIC20.38■□□□□ 0.85
CBX4O00257 AC245041.2-204ENST00000610809 1962 ntTSL 1 (best) BASIC20.38■□□□□ 0.85
CBX4O00257 SNUPN-205ENST00000564644 1931 ntAPPRIS P1 TSL 2 BASIC20.38■□□□□ 0.85
CBX4O00257 H3F3A-204ENST00000366816 799 ntAPPRIS P1 TSL 3 BASIC20.38■□□□□ 0.85
CBX4O00257 PEX7-202ENST00000367756 680 ntTSL 3 BASIC20.38■□□□□ 0.85
CBX4O00257 TMEM35B-201ENST00000373337 922 ntAPPRIS P1 TSL 1 (best) BASIC20.38■□□□□ 0.85
CBX4O00257 ZNF529-AS1-202ENST00000475219 1033 ntTSL 1 (best) BASIC20.38■□□□□ 0.85
Retrieved 100 of 98,524 protein–RNA pairs in 45.2 ms