Protein–RNA interactions for Protein: H3BSU7

TMX2-CTNND1, TMX2-CTNND1 readthrough (NMD candidate), humanhuman

Predictions only

Length 103 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TMX2-CTNND1H3BSU7 DDIT4-201ENST00000307365 1748 ntAPPRIS P1 TSL 1 (best) BASIC19.6■□□□□ 0.73
TMX2-CTNND1H3BSU7 TPTEP1-205ENST00000558085 1738 ntTSL 2 BASIC19.6■□□□□ 0.73
TMX2-CTNND1H3BSU7 B3GNT2-201ENST00000301998 2763 ntAPPRIS P1 TSL 1 (best) BASIC19.6■□□□□ 0.73
TMX2-CTNND1H3BSU7 SMURF1-201ENST00000361125 5737 ntTSL 1 (best) BASIC19.6■□□□□ 0.73
TMX2-CTNND1H3BSU7 CABP2-202ENST00000353903 789 ntAPPRIS P1 TSL 5 BASIC19.6■□□□□ 0.73
TMX2-CTNND1H3BSU7 TCEAL6-202ENST00000372774 1106 ntAPPRIS P1 TSL 1 (best) BASIC19.6■□□□□ 0.73
TMX2-CTNND1H3BSU7 CHCHD10-201ENST00000401675 691 ntAPPRIS P1 TSL 5 BASIC19.6■□□□□ 0.73
TMX2-CTNND1H3BSU7 AL390719.1-204ENST00000412397 1219 ntBASIC19.6■□□□□ 0.73
TMX2-CTNND1H3BSU7 AC097641.1-201ENST00000580671 588 ntTSL 4 BASIC19.6■□□□□ 0.73
TMX2-CTNND1H3BSU7 NAT14-204ENST00000591590 1011 ntTSL 1 (best) BASIC19.6■□□□□ 0.73
TMX2-CTNND1H3BSU7 AC007993.2-201ENST00000592842 521 ntTSL 4 BASIC19.6■□□□□ 0.73
TMX2-CTNND1H3BSU7 ARSA-202ENST00000356098 1895 ntAPPRIS P1 TSL 1 (best) BASIC19.6■□□□□ 0.73
TMX2-CTNND1H3BSU7 AC069431.1-201ENST00000488882 1877 ntTSL 5 BASIC19.6■□□□□ 0.73
TMX2-CTNND1H3BSU7 GNS-208ENST00000543646 2164 ntAPPRIS ALT2 TSL 2 BASIC19.6■□□□□ 0.73
TMX2-CTNND1H3BSU7 MEF2B-203ENST00000410050 1429 ntTSL 5 BASIC19.59■□□□□ 0.73
TMX2-CTNND1H3BSU7 ZDHHC24-203ENST00000526986 1424 ntTSL 1 (best) BASIC19.59■□□□□ 0.73
TMX2-CTNND1H3BSU7 ARHGAP8-204ENST00000389774 1725 ntAPPRIS ALT2 TSL 2 BASIC19.59■□□□□ 0.73
TMX2-CTNND1H3BSU7 EBF1-202ENST00000380654 2345 ntTSL 1 (best) BASIC19.59■□□□□ 0.73
TMX2-CTNND1H3BSU7 AC133555.3-201ENST00000549950 1693 ntAPPRIS P5 TSL 5 BASIC19.59■□□□□ 0.73
TMX2-CTNND1H3BSU7 AC106782.1-201ENST00000550538 1693 ntAPPRIS P5 TSL 5 BASIC19.59■□□□□ 0.73
TMX2-CTNND1H3BSU7 KLHL17-205ENST00000622660 1950 ntTSL 5 BASIC19.59■□□□□ 0.73
TMX2-CTNND1H3BSU7 DGKQ-201ENST00000273814 4636 ntAPPRIS P2 TSL 1 (best) BASIC19.59■□□□□ 0.73
TMX2-CTNND1H3BSU7 JMJD4-202ENST00000438896 2502 ntTSL 2 BASIC19.59■□□□□ 0.73
TMX2-CTNND1H3BSU7 GMPPA-205ENST00000373917 1630 ntTSL 5 BASIC19.59■□□□□ 0.73
TMX2-CTNND1H3BSU7 C20orf27-201ENST00000217195 1302 ntTSL 2 BASIC19.59■□□□□ 0.73
TMX2-CTNND1H3BSU7 MRPL4-202ENST00000307422 1320 ntAPPRIS P2 TSL 5 BASIC19.59■□□□□ 0.73
TMX2-CTNND1H3BSU7 FAM58A-204ENST00000576892 1306 ntAPPRIS ALT2 TSL 1 (best) BASIC19.59■□□□□ 0.73
TMX2-CTNND1H3BSU7 DYRK2-202ENST00000344096 8912 ntAPPRIS P4 TSL 1 (best) BASIC19.59■□□□□ 0.73
TMX2-CTNND1H3BSU7 PHF2-202ENST00000375376 3045 ntTSL 5 BASIC19.59■□□□□ 0.73
TMX2-CTNND1H3BSU7 LYPD1-201ENST00000345008 1033 ntTSL 1 (best) BASIC19.59■□□□□ 0.73
TMX2-CTNND1H3BSU7 NKAIN4-201ENST00000370307 793 ntTSL 5 BASIC19.59■□□□□ 0.73
TMX2-CTNND1H3BSU7 AC012618.2-201ENST00000428058 849 ntBASIC19.59■□□□□ 0.73
TMX2-CTNND1H3BSU7 WDR86-AS1-203ENST00000480632 704 ntTSL 1 (best) BASIC19.59■□□□□ 0.73
TMX2-CTNND1H3BSU7 OPA3-203ENST00000544371 1146 ntTSL 2 BASIC19.59■□□□□ 0.73
TMX2-CTNND1H3BSU7 BCL2L10-202ENST00000561198 825 ntAPPRIS ALT2 TSL 1 (best) BASIC19.59■□□□□ 0.73
TMX2-CTNND1H3BSU7 C17orf62-230ENST00000583617 866 ntTSL 5 BASIC19.59■□□□□ 0.73
TMX2-CTNND1H3BSU7 GRTP1-202ENST00000375430 1834 ntAPPRIS ALT2 TSL 1 (best) BASIC19.59■□□□□ 0.73
TMX2-CTNND1H3BSU7 GCH1-205ENST00000536224 1805 ntTSL 1 (best) BASIC19.59■□□□□ 0.73
TMX2-CTNND1H3BSU7 C18orf25-204ENST00000615553 2329 ntTSL 5 BASIC19.59■□□□□ 0.73
TMX2-CTNND1H3BSU7 ACAA1-202ENST00000333167 1785 ntAPPRIS P1 TSL 1 (best) BASIC19.59■□□□□ 0.73
TMX2-CTNND1H3BSU7 PTGER3-203ENST00000354608 1470 ntAPPRIS ALT2 TSL 5 BASIC19.59■□□□□ 0.73
TMX2-CTNND1H3BSU7 CORO1B-202ENST00000393893 1931 ntAPPRIS P1 TSL 5 BASIC19.59■□□□□ 0.73
TMX2-CTNND1H3BSU7 GPR62-201ENST00000322241 2191 ntAPPRIS P1 BASIC19.59■□□□□ 0.73
TMX2-CTNND1H3BSU7 SPOCK3-204ENST00000502330 2180 ntAPPRIS ALT2 TSL 1 (best) BASIC19.59■□□□□ 0.73
TMX2-CTNND1H3BSU7 DIO3-201ENST00000510508 2102 ntAPPRIS P1 BASIC19.58■□□□□ 0.73
TMX2-CTNND1H3BSU7 MFSD14C-208ENST00000637864 1802 ntAPPRIS ALT2 TSL 2 BASIC19.58■□□□□ 0.73
TMX2-CTNND1H3BSU7 KRT17P2-201ENST00000300992 1314 ntBASIC19.58■□□□□ 0.73
TMX2-CTNND1H3BSU7 TOM1L2-210ENST00000542206 1320 ntTSL 2 BASIC19.58■□□□□ 0.73
TMX2-CTNND1H3BSU7 FAM3A-208ENST00000419205 1763 ntTSL 2 BASIC19.58■□□□□ 0.73
TMX2-CTNND1H3BSU7 PBX1-222ENST00000627490 1769 ntTSL 2 BASIC19.58■□□□□ 0.73
TMX2-CTNND1H3BSU7 WT1-211ENST00000639907 1545 ntAPPRIS ALT2 TSL 2 BASIC19.58■□□□□ 0.73
TMX2-CTNND1H3BSU7 FEM1AP1-201ENST00000431297 1995 ntBASIC19.58■□□□□ 0.73
TMX2-CTNND1H3BSU7 UBE2C-201ENST00000243893 476 ntTSL 2 BASIC19.58■□□□□ 0.72
TMX2-CTNND1H3BSU7 PDZRN3-202ENST00000308537 1136 ntTSL 1 (best) BASIC19.58■□□□□ 0.72
TMX2-CTNND1H3BSU7 HDAC11-205ENST00000404548 577 ntTSL 4 BASIC19.58■□□□□ 0.72
TMX2-CTNND1H3BSU7 AC073316.3-201ENST00000437354 982 ntTSL 3 BASIC19.58■□□□□ 0.72
TMX2-CTNND1H3BSU7 LINC00969-218ENST00000452844 583 ntTSL 3 BASIC19.58■□□□□ 0.72
TMX2-CTNND1H3BSU7 LINC00969-221ENST00000457233 1279 ntTSL 1 (best) BASIC19.58■□□□□ 0.72
TMX2-CTNND1H3BSU7 AC133681.1-201ENST00000465482 601 ntBASIC19.58■□□□□ 0.72
TMX2-CTNND1H3BSU7 AC008443.1-203ENST00000505151 886 ntTSL 2 BASIC19.58■□□□□ 0.72
TMX2-CTNND1H3BSU7 AC027682.2-201ENST00000563083 336 ntTSL 5 BASIC19.58■□□□□ 0.72
TMX2-CTNND1H3BSU7 AC005829.2-201ENST00000571422 1056 ntBASIC19.58■□□□□ 0.72
TMX2-CTNND1H3BSU7 AC233263.1-201ENST00000578059 224 ntBASIC19.58■□□□□ 0.72
TMX2-CTNND1H3BSU7 AC120498.8-201ENST00000614275 531 ntBASIC19.58■□□□□ 0.72
TMX2-CTNND1H3BSU7 FADS6-203ENST00000612771 2154 ntAPPRIS P2 TSL 1 (best) BASIC19.58■□□□□ 0.72
TMX2-CTNND1H3BSU7 GAS8-202ENST00000536122 1687 ntTSL 2 BASIC19.58■□□□□ 0.72
TMX2-CTNND1H3BSU7 TTYH1-202ENST00000376530 1885 ntAPPRIS P3 TSL 1 (best) BASIC19.58■□□□□ 0.72
TMX2-CTNND1H3BSU7 SPESP1-201ENST00000310673 1431 ntAPPRIS P1 TSL 1 (best) BASIC19.58■□□□□ 0.72
TMX2-CTNND1H3BSU7 MSANTD1-203ENST00000507492 2289 ntAPPRIS ALT2 TSL 1 (best) BASIC19.58■□□□□ 0.72
TMX2-CTNND1H3BSU7 DNAAF3-207ENST00000527223 2228 ntAPPRIS ALT2 TSL 2 BASIC19.57■□□□□ 0.72
TMX2-CTNND1H3BSU7 EIPR1-206ENST00000443925 1771 ntTSL 3 BASIC19.57■□□□□ 0.72
TMX2-CTNND1H3BSU7 EXTL3-213ENST00000523149 1779 ntTSL 5 BASIC19.57■□□□□ 0.72
TMX2-CTNND1H3BSU7 BAZ1A-201ENST00000358716 5920 ntTSL 1 (best) BASIC19.57■□□□□ 0.72
TMX2-CTNND1H3BSU7 RABL2B-206ENST00000395598 2169 ntAPPRIS P3 TSL 1 (best) BASIC19.57■□□□□ 0.72
TMX2-CTNND1H3BSU7 DKK3-203ENST00000525493 1326 ntTSL 2 BASIC19.57■□□□□ 0.72
TMX2-CTNND1H3BSU7 NOXO1-202ENST00000356120 1539 ntAPPRIS P3 TSL 1 (best) BASIC19.57■□□□□ 0.72
TMX2-CTNND1H3BSU7 DOK3-202ENST00000357198 1729 ntTSL 2 BASIC19.57■□□□□ 0.72
TMX2-CTNND1H3BSU7 CPNE9-203ENST00000383832 2068 ntAPPRIS P1 TSL 5 BASIC19.57■□□□□ 0.72
TMX2-CTNND1H3BSU7 ZGPAT-204ENST00000369967 1890 ntAPPRIS P1 TSL 5 BASIC19.57■□□□□ 0.72
TMX2-CTNND1H3BSU7 SH3D19-211ENST00000604030 5228 ntTSL 5 BASIC19.57■□□□□ 0.72
TMX2-CTNND1H3BSU7 FBL-201ENST00000221801 1160 ntAPPRIS P1 TSL 1 (best) BASIC19.57■□□□□ 0.72
TMX2-CTNND1H3BSU7 AL390719.1-201ENST00000427998 977 ntTSL 1 (best) BASIC19.57■□□□□ 0.72
TMX2-CTNND1H3BSU7 TPD52L1-207ENST00000527711 999 ntTSL 2 BASIC19.57■□□□□ 0.72
TMX2-CTNND1H3BSU7 SEC23A-AS1-201ENST00000557350 500 ntTSL 3 BASIC19.57■□□□□ 0.72
TMX2-CTNND1H3BSU7 SMIM1-203ENST00000561886 491 ntTSL 2 BASIC19.57■□□□□ 0.72
TMX2-CTNND1H3BSU7 MAZ-215ENST00000569978 567 ntTSL 1 (best) BASIC19.57■□□□□ 0.72
TMX2-CTNND1H3BSU7 MTDHP1-201ENST00000605323 784 ntBASIC19.57■□□□□ 0.72
TMX2-CTNND1H3BSU7 REST-211ENST00000640168 1268 ntTSL 1 (best) BASIC19.57■□□□□ 0.72
TMX2-CTNND1H3BSU7 FAM129C-203ENST00000449408 2004 ntAPPRIS ALT2 TSL 2 BASIC19.57■□□□□ 0.72
TMX2-CTNND1H3BSU7 PPP1R36-201ENST00000298705 1405 ntAPPRIS P2 TSL 1 (best) BASIC19.57■□□□□ 0.72
TMX2-CTNND1H3BSU7 TPM1-208ENST00000404484 1568 ntTSL 1 (best) BASIC19.57■□□□□ 0.72
TMX2-CTNND1H3BSU7 BAG4-202ENST00000432471 1943 ntTSL 1 (best) BASIC19.57■□□□□ 0.72
TMX2-CTNND1H3BSU7 TTBK1-202ENST00000304139 2449 ntTSL 5 BASIC19.56■□□□□ 0.72
TMX2-CTNND1H3BSU7 NOP56-201ENST00000329276 2400 ntAPPRIS P1 TSL 1 (best) BASIC19.56■□□□□ 0.72
TMX2-CTNND1H3BSU7 NSMF-203ENST00000371472 1852 ntAPPRIS P3 TSL 2 BASIC19.56■□□□□ 0.72
TMX2-CTNND1H3BSU7 KCNA3-201ENST00000369769 2569 ntAPPRIS P1 BASIC19.56■□□□□ 0.72
TMX2-CTNND1H3BSU7 GORASP1-220ENST00000479927 1345 ntTSL 2 BASIC19.56■□□□□ 0.72
TMX2-CTNND1H3BSU7 PSIP1-201ENST00000380715 1966 ntTSL 1 (best) BASIC19.56■□□□□ 0.72
TMX2-CTNND1H3BSU7 IRF7-205ENST00000397574 1968 ntAPPRIS ALT2 TSL 1 (best) BASIC19.56■□□□□ 0.72
TMX2-CTNND1H3BSU7 POTEC-204ENST00000620346 1988 ntAPPRIS ALT2 TSL 1 (best) BASIC19.56■□□□□ 0.72
Retrieved 100 of 98,524 protein–RNA pairs in 19.7 ms