Protein–RNA interactions for Protein: P28360

MSX1, Homeobox protein MSX-1, humanhuman

Predictions only

Length 303 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MSX1P28360 SYTL4-202ENST00000276141 3737 ntAPPRIS P1 TSL 1 (best) BASIC8.04□□□□□ -1.12
MSX1P28360 UTY-205ENST00000382896 6661 ntAPPRIS ALT2 TSL 1 (best) BASIC8.04□□□□□ -1.12
MSX1P28360 UTY-211ENST00000540140 6652 ntTSL 1 (best) BASIC8.04□□□□□ -1.12
MSX1P28360 UTY-214ENST00000617789 6682 ntAPPRIS ALT2 TSL 1 (best) BASIC8.04□□□□□ -1.12
MSX1P28360 NEDD4L-209ENST00000456986 8436 ntTSL 1 (best) BASIC8.04□□□□□ -1.12
MSX1P28360 CRNKL1-201ENST00000377327 4370 ntTSL 1 (best) BASIC8.04□□□□□ -1.12
MSX1P28360 C11orf70-201ENST00000434758 2193 ntAPPRIS P1 TSL 2 BASIC8.04□□□□□ -1.12
MSX1P28360 RGS17-201ENST00000206262 1636 ntAPPRIS P1 TSL 1 (best) BASIC8.04□□□□□ -1.12
MSX1P28360 MINDY3-201ENST00000277632 2381 ntAPPRIS P1 TSL 1 (best) BASIC8.04□□□□□ -1.12
MSX1P28360 PRKAR1A-211ENST00000586397 1940 ntAPPRIS P1 TSL 1 (best) BASIC8.04□□□□□ -1.12
MSX1P28360 ABCF2-202ENST00000287844 3546 ntAPPRIS P1 TSL 1 (best) BASIC8.04□□□□□ -1.12
MSX1P28360 ATP5J2-202ENST00000359832 323 ntTSL 2 BASIC8.04□□□□□ -1.12
MSX1P28360 C1orf194-203ENST00000369948 663 ntAPPRIS P1 TSL 2 BASIC8.04□□□□□ -1.12
MSX1P28360 RNU6-932P-201ENST00000391108 106 ntBASIC8.04□□□□□ -1.12
MSX1P28360 AL137784.1-201ENST00000407121 745 ntBASIC8.04□□□□□ -1.12
MSX1P28360 U3.33-201ENST00000408117 204 ntBASIC8.04□□□□□ -1.12
MSX1P28360 USP9YP20-201ENST00000419224 558 ntBASIC8.04□□□□□ -1.12
MSX1P28360 ITGA9-AS1-202ENST00000420870 581 ntTSL 4 BASIC8.04□□□□□ -1.12
MSX1P28360 AL023755.1-203ENST00000422253 519 ntTSL 1 (best) BASIC8.04□□□□□ -1.12
MSX1P28360 AC005009.1-201ENST00000423979 269 ntTSL 2 BASIC8.04□□□□□ -1.12
MSX1P28360 CFL1P7-201ENST00000424759 486 ntBASIC8.04□□□□□ -1.12
MSX1P28360 TTC4P1-201ENST00000427137 1158 ntBASIC8.04□□□□□ -1.12
MSX1P28360 RPS4XP16-201ENST00000427198 791 ntBASIC8.04□□□□□ -1.12
MSX1P28360 AL683807.1-201ENST00000427886 445 ntTSL 2 BASIC8.04□□□□□ -1.12
MSX1P28360 AC007036.1-201ENST00000430537 674 ntTSL 3 BASIC8.04□□□□□ -1.12
MSX1P28360 LINC01827-201ENST00000432711 555 ntTSL 2 BASIC8.04□□□□□ -1.12
MSX1P28360 DAB1-AS1-203ENST00000432897 656 ntTSL 5 BASIC8.04□□□□□ -1.12
MSX1P28360 AC244205.2-201ENST00000434790 898 ntTSL 5 BASIC8.04□□□□□ -1.12
MSX1P28360 USP9YP29-201ENST00000445112 563 ntBASIC8.04□□□□□ -1.12
MSX1P28360 AC023271.1-201ENST00000445936 1090 ntBASIC8.04□□□□□ -1.12
MSX1P28360 AL512649.2-201ENST00000446206 597 ntTSL 3 BASIC8.04□□□□□ -1.12
MSX1P28360 LINC01883-201ENST00000457385 380 ntTSL 2 BASIC8.04□□□□□ -1.12
MSX1P28360 TPT1P7-201ENST00000458300 517 ntBASIC8.04□□□□□ -1.12
MSX1P28360 KLF7P1-201ENST00000490941 1048 ntBASIC8.04□□□□□ -1.12
MSX1P28360 AGK-205ENST00000492693 1046 ntTSL 1 (best) BASIC8.04□□□□□ -1.12
MSX1P28360 AC098799.2-201ENST00000509466 868 ntBASIC8.04□□□□□ -1.12
MSX1P28360 AC027031.1-201ENST00000517318 489 ntTSL 3 BASIC8.04□□□□□ -1.12
MSX1P28360 AC103409.1-202ENST00000518416 577 ntTSL 4 BASIC8.04□□□□□ -1.12
MSX1P28360 AC067817.1-201ENST00000518535 356 ntTSL 2 BASIC8.04□□□□□ -1.12
MSX1P28360 AC044836.1-201ENST00000519514 274 ntBASIC8.04□□□□□ -1.12
MSX1P28360 CCAR2-208ENST00000521301 337 ntTSL 3 BASIC8.04□□□□□ -1.12
MSX1P28360 RPL10P9-201ENST00000522551 645 ntBASIC8.04□□□□□ -1.12
MSX1P28360 C14orf105-210ENST00000534126 1030 ntAPPRIS ALT1 TSL 1 (best) BASIC8.04□□□□□ -1.12
MSX1P28360 NTAN1P3-201ENST00000535885 715 ntBASIC8.04□□□□□ -1.12
MSX1P28360 UBE2NP1-201ENST00000545592 458 ntBASIC8.04□□□□□ -1.12
MSX1P28360 COX5AP2-201ENST00000554418 394 ntBASIC8.04□□□□□ -1.12
MSX1P28360 LINC02562-201ENST00000561705 785 ntTSL 2 BASIC8.04□□□□□ -1.12
MSX1P28360 AC137527.1-201ENST00000565839 1261 ntBASIC8.04□□□□□ -1.12
MSX1P28360 PDCD6IPP2-205ENST00000565892 498 ntTSL 2 BASIC8.04□□□□□ -1.12
MSX1P28360 AC012146.1-201ENST00000571138 462 ntTSL 2 BASIC8.04□□□□□ -1.12
MSX1P28360 AC011260.1-201ENST00000578420 472 ntBASIC8.04□□□□□ -1.12
MSX1P28360 AC036222.1-201ENST00000579972 701 ntTSL 3 BASIC8.04□□□□□ -1.12
MSX1P28360 AC025682.1-201ENST00000582389 437 ntTSL 5 BASIC8.04□□□□□ -1.12
MSX1P28360 AC005208.1-202ENST00000587325 725 ntTSL 3 BASIC8.04□□□□□ -1.12
MSX1P28360 AC104365.1-201ENST00000588835 394 ntTSL 5 BASIC8.04□□□□□ -1.12
MSX1P28360 TBX18-AS1-208ENST00000591225 762 ntTSL 5 BASIC8.04□□□□□ -1.12
MSX1P28360 AC005779.1-201ENST00000591569 540 ntTSL 3 BASIC8.04□□□□□ -1.12
MSX1P28360 AC008734.2-201ENST00000595277 477 ntBASIC8.04□□□□□ -1.12
MSX1P28360 AP001425.1-202ENST00000605450 1063 ntBASIC8.04□□□□□ -1.12
MSX1P28360 AL024498.1-201ENST00000606522 1100 ntTSL 3 BASIC8.04□□□□□ -1.12
MSX1P28360 AC090517.2-201ENST00000614966 680 ntBASIC8.04□□□□□ -1.12
MSX1P28360 Metazoa_SRP.44-201ENST00000615037 294 ntBASIC8.04□□□□□ -1.12
MSX1P28360 AC015574.1-201ENST00000615194 489 ntTSL 5 BASIC8.04□□□□□ -1.12
MSX1P28360 AC215522.1-201ENST00000615488 446 ntBASIC8.04□□□□□ -1.12
MSX1P28360 RFPL3-AS1_1.1-201ENST00000617561 88 ntBASIC8.04□□□□□ -1.12
MSX1P28360 TEX46-203ENST00000622840 479 ntAPPRIS ALT2 TSL 5 BASIC8.04□□□□□ -1.12
MSX1P28360 AC116618.1-201ENST00000634617 774 ntBASIC8.04□□□□□ -1.12
MSX1P28360 AL356234.2-201ENST00000637996 1160 ntTSL 5 BASIC8.04□□□□□ -1.12
MSX1P28360 FAM238C-205ENST00000640641 391 ntBASIC8.04□□□□□ -1.12
MSX1P28360 RMDN2-202ENST00000354545 1381 ntAPPRIS P1 TSL 1 (best) BASIC8.04□□□□□ -1.12
MSX1P28360 ARPP21-203ENST00000396482 2416 ntTSL 2 BASIC8.04□□□□□ -1.12
MSX1P28360 MICB-204ENST00000538442 2411 ntAPPRIS ALT2 TSL 2 BASIC8.04□□□□□ -1.12
MSX1P28360 PARP4-201ENST00000381989 5474 ntAPPRIS P1 TSL 1 (best) BASIC8.04□□□□□ -1.12
MSX1P28360 LINC01588-217ENST00000635379 1595 ntTSL 5 BASIC8.04□□□□□ -1.12
MSX1P28360 GPR171-201ENST00000309180 1786 ntAPPRIS P1 TSL 1 (best) BASIC8.04□□□□□ -1.12
MSX1P28360 PTPRB-208ENST00000550358 6583 ntTSL 2 BASIC8.04□□□□□ -1.12
MSX1P28360 TMED2-203ENST00000509052 1975 ntTSL 2 BASIC8.04□□□□□ -1.12
MSX1P28360 ZNF462-204ENST00000441147 4691 ntTSL 1 (best) BASIC8.04□□□□□ -1.12
MSX1P28360 ARMC8-210ENST00000469044 4790 ntAPPRIS P1 TSL 5 BASIC8.04□□□□□ -1.12
MSX1P28360 CCDC15-203ENST00000529051 3924 ntAPPRIS ALT2 TSL 5 BASIC8.04□□□□□ -1.12
MSX1P28360 DCLRE1C-209ENST00000378278 2354 ntAPPRIS P1 TSL 1 (best) BASIC8.04□□□□□ -1.12
MSX1P28360 GOLGA8B-201ENST00000342314 4335 ntAPPRIS P2 TSL 1 (best) BASIC8.04□□□□□ -1.12
MSX1P28360 PTPN20-205ENST00000395721 2779 ntAPPRIS ALT2 TSL 1 (best) BASIC8.04□□□□□ -1.12
MSX1P28360 AL513548.3-201ENST00000611708 2865 ntTSL 1 (best) BASIC8.04□□□□□ -1.12
MSX1P28360 PPARGC1B-201ENST00000309241 10568 ntAPPRIS P3 TSL 1 (best) BASIC8.04□□□□□ -1.12
MSX1P28360 MBP-206ENST00000397863 4800 ntTSL 3 BASIC8.04□□□□□ -1.12
MSX1P28360 ELP3-202ENST00000380353 3078 ntTSL 2 BASIC8.04□□□□□ -1.12
MSX1P28360 SLFN13-210ENST00000534689 3058 ntTSL 2 BASIC8.04□□□□□ -1.12
MSX1P28360 SRSF10-204ENST00000344989 3487 ntTSL 1 (best) BASIC8.04□□□□□ -1.12
MSX1P28360 OR11G2-202ENST00000641682 3786 ntAPPRIS P1 BASIC8.04□□□□□ -1.12
MSX1P28360 CTNND1-205ENST00000399050 6313 ntTSL 1 (best) BASIC8.04□□□□□ -1.12
MSX1P28360 MDM2-202ENST00000258149 12633 ntAPPRIS P2 TSL 1 (best) BASIC8.03□□□□□ -1.12
MSX1P28360 AP002765.1-201ENST00000528675 1507 ntBASIC8.03□□□□□ -1.12
MSX1P28360 ZNF833P-202ENST00000635221 1540 ntTSL 1 (best) BASIC8.03□□□□□ -1.12
MSX1P28360 XRCC6P1-201ENST00000420392 1805 ntBASIC8.03□□□□□ -1.12
MSX1P28360 ZNF23-204ENST00000428724 1932 ntAPPRIS P3 TSL 1 (best) BASIC8.03□□□□□ -1.12
MSX1P28360 TAOK3-209ENST00000537952 2147 ntTSL 2 BASIC8.03□□□□□ -1.12
MSX1P28360 AL160191.3-201ENST00000619152 2203 ntBASIC8.03□□□□□ -1.12
MSX1P28360 ADAM2-202ENST00000347580 2535 ntAPPRIS ALT2 TSL 1 (best) BASIC8.03□□□□□ -1.12
MSX1P28360 ARMC3-201ENST00000298032 2811 ntAPPRIS P3 TSL 1 (best) BASIC8.03□□□□□ -1.12
Retrieved 100 of 98,524 protein–RNA pairs in 70.1 ms