Protein–RNA interactions for Protein: Q9UN37

VPS4A, Vacuolar protein sorting-associated protein 4A, humanhuman

Predictions only

Length 437 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS4AQ9UN37 PQLC2-201ENST00000375153 2153 ntAPPRIS P1 TSL 2 BASIC19.32■□□□□ 0.68
VPS4AQ9UN37 MGAT1-204ENST00000427865 1919 ntAPPRIS P1 TSL 2 BASIC19.32■□□□□ 0.68
VPS4AQ9UN37 CAPN12-201ENST00000328867 2762 ntAPPRIS P1 TSL 1 (best) BASIC19.32■□□□□ 0.68
VPS4AQ9UN37 ZDHHC5-201ENST00000287169 4666 ntAPPRIS P1 TSL 1 (best) BASIC19.32■□□□□ 0.68
VPS4AQ9UN37 NAA20-202ENST00000334982 1260 ntAPPRIS P1 TSL 1 (best) BASIC19.32■□□□□ 0.68
VPS4AQ9UN37 INTS11-205ENST00000429572 1104 ntTSL 2 BASIC19.32■□□□□ 0.68
VPS4AQ9UN37 NDUFB2-203ENST00000461457 559 ntTSL 3 BASIC19.32■□□□□ 0.68
VPS4AQ9UN37 AP000785.1-201ENST00000527314 613 ntTSL 4 BASIC19.32■□□□□ 0.68
VPS4AQ9UN37 ADM-205ENST00000528544 586 ntTSL 2 BASIC19.32■□□□□ 0.68
VPS4AQ9UN37 P2RX2-201ENST00000343948 1494 ntAPPRIS P4 TSL 1 (best) BASIC19.32■□□□□ 0.68
VPS4AQ9UN37 GNA12-201ENST00000275364 4378 ntAPPRIS P1 TSL 1 (best) BASIC19.32■□□□□ 0.68
VPS4AQ9UN37 AC068338.2-201ENST00000563278 1430 ntBASIC19.32■□□□□ 0.68
VPS4AQ9UN37 ZNF276-208ENST00000568064 2203 ntTSL 5 BASIC19.32■□□□□ 0.68
VPS4AQ9UN37 CPAMD8-202ENST00000388925 5355 ntTSL 5 BASIC19.32■□□□□ 0.68
VPS4AQ9UN37 ZNF771-201ENST00000319296 2371 ntAPPRIS P1 TSL 1 (best) BASIC19.32■□□□□ 0.68
VPS4AQ9UN37 ACHE-207ENST00000428317 2159 ntAPPRIS P1 TSL 1 (best) BASIC19.32■□□□□ 0.68
VPS4AQ9UN37 DTX2-212ENST00000446820 1770 ntAPPRIS ALT2 TSL 1 (best) BASIC19.32■□□□□ 0.68
VPS4AQ9UN37 SNX21-201ENST00000342644 1506 ntTSL 1 (best) BASIC19.31■□□□□ 0.68
VPS4AQ9UN37 NOXO1-202ENST00000356120 1539 ntAPPRIS P3 TSL 1 (best) BASIC19.31■□□□□ 0.68
VPS4AQ9UN37 ST3GAL4-204ENST00000444328 1812 ntAPPRIS ALT1 TSL 5 BASIC19.31■□□□□ 0.68
VPS4AQ9UN37 TRA2B-203ENST00000382191 976 ntTSL 2 BASIC19.31■□□□□ 0.68
VPS4AQ9UN37 WIPF1-207ENST00000410117 777 ntTSL 3 BASIC19.31■□□□□ 0.68
VPS4AQ9UN37 PTPA-214ENST00000423100 988 ntTSL 2 BASIC19.31■□□□□ 0.68
VPS4AQ9UN37 AL596275.1-201ENST00000423464 877 ntBASIC19.31■□□□□ 0.68
VPS4AQ9UN37 LTB-210ENST00000429299 897 ntAPPRIS P1 TSL 1 (best) BASIC19.31■□□□□ 0.68
VPS4AQ9UN37 CASP6-205ENST00000505486 538 ntTSL 4 BASIC19.31■□□□□ 0.68
VPS4AQ9UN37 AC006058.3-201ENST00000606217 1069 ntBASIC19.31■□□□□ 0.68
VPS4AQ9UN37 MARS-234ENST00000630571 216 ntTSL 5 BASIC19.31■□□□□ 0.68
VPS4AQ9UN37 MARS-235ENST00000630803 183 ntTSL 3 BASIC19.31■□□□□ 0.68
VPS4AQ9UN37 IGFLR1-201ENST00000246532 1645 ntAPPRIS P2 TSL 1 (best) BASIC19.31■□□□□ 0.68
VPS4AQ9UN37 GPR162-203ENST00000428545 1610 ntTSL 1 (best) BASIC19.31■□□□□ 0.68
VPS4AQ9UN37 CPNE9-202ENST00000383831 1751 ntTSL 5 BASIC19.31■□□□□ 0.68
VPS4AQ9UN37 SCUBE1-201ENST00000290460 2258 ntTSL 1 (best) BASIC19.31■□□□□ 0.68
VPS4AQ9UN37 MRFAP1-201ENST00000320912 2049 ntAPPRIS P1 TSL 2 BASIC19.3■□□□□ 0.68
VPS4AQ9UN37 DXO-202ENST00000375349 1667 ntAPPRIS P1 TSL 5 BASIC19.3■□□□□ 0.68
VPS4AQ9UN37 SLC39A5-209ENST00000454355 1968 ntAPPRIS P1 TSL 1 (best) BASIC19.3■□□□□ 0.68
VPS4AQ9UN37 ARSE-205ENST00000540563 1990 ntTSL 2 BASIC19.3■□□□□ 0.68
VPS4AQ9UN37 TRABD-204ENST00000395829 1628 ntAPPRIS ALT2 TSL 5 BASIC19.3■□□□□ 0.68
VPS4AQ9UN37 PLAGL1-207ENST00000417959 1645 ntTSL 1 (best) BASIC19.3■□□□□ 0.68
VPS4AQ9UN37 NIPAL4-202ENST00000435489 1600 ntAPPRIS ALT2 TSL 2 BASIC19.3■□□□□ 0.68
VPS4AQ9UN37 IDH1-205ENST00000446179 2298 ntAPPRIS P1 TSL 1 (best) BASIC19.3■□□□□ 0.68
VPS4AQ9UN37 ARRB2-202ENST00000346341 1769 ntTSL 2 BASIC19.3■□□□□ 0.68
VPS4AQ9UN37 WDR90-201ENST00000293879 5488 ntAPPRIS P2 TSL 5 BASIC19.3■□□□□ 0.68
VPS4AQ9UN37 MYO15B-232ENST00000610510 9195 ntAPPRIS P1 TSL 5 BASIC19.3■□□□□ 0.68
VPS4AQ9UN37 CALML5-201ENST00000380332 859 ntAPPRIS P1 BASIC19.3■□□□□ 0.68
VPS4AQ9UN37 AQP12B-201ENST00000407834 1094 ntAPPRIS P2 TSL 1 (best) BASIC19.3■□□□□ 0.68
VPS4AQ9UN37 DNAJA4-210ENST00000489435 947 ntTSL 3 BASIC19.3■□□□□ 0.68
VPS4AQ9UN37 FAM47E-204ENST00000510328 1002 ntAPPRIS ALT2 TSL 2 BASIC19.3■□□□□ 0.68
VPS4AQ9UN37 UNC93B6-201ENST00000525262 1143 ntTSL 5 BASIC19.3■□□□□ 0.68
VPS4AQ9UN37 Z92544.1-201ENST00000567091 730 ntTSL 3 BASIC19.3■□□□□ 0.68
VPS4AQ9UN37 LIMD2-206ENST00000578993 602 ntTSL 3 BASIC19.3■□□□□ 0.68
VPS4AQ9UN37 FAM189B-201ENST00000350210 2379 ntTSL 1 (best) BASIC19.3■□□□□ 0.68
VPS4AQ9UN37 USP39-204ENST00000409766 2033 ntTSL 2 BASIC19.3■□□□□ 0.68
VPS4AQ9UN37 PCBP4-212ENST00000484633 2009 ntTSL 5 BASIC19.3■□□□□ 0.68
VPS4AQ9UN37 SYT7-206ENST00000540677 2013 ntTSL 1 (best) BASIC19.3■□□□□ 0.68
VPS4AQ9UN37 CHD1L-201ENST00000361293 2484 ntTSL 2 BASIC19.3■□□□□ 0.68
VPS4AQ9UN37 ADAMTS19-205ENST00000638972 5089 ntAPPRIS P1 TSL 1 (best) BASIC19.3■□□□□ 0.68
VPS4AQ9UN37 MYH14-206ENST00000596571 5988 ntAPPRIS ALT2 TSL 5 BASIC19.3■□□□□ 0.68
VPS4AQ9UN37 RTCA-201ENST00000260563 1534 ntTSL 1 (best) BASIC19.3■□□□□ 0.68
VPS4AQ9UN37 PCDHA13-203ENST00000617769 2427 ntAPPRIS ALT2 BASIC19.3■□□□□ 0.68
VPS4AQ9UN37 VGF-201ENST00000249330 2575 ntAPPRIS P1 TSL 1 (best) BASIC19.3■□□□□ 0.68
VPS4AQ9UN37 TSPAN17-202ENST00000310032 2550 ntTSL 5 BASIC19.3■□□□□ 0.68
VPS4AQ9UN37 CERS4-209ENST00000559450 1637 ntAPPRIS P1 TSL 5 BASIC19.29■□□□□ 0.68
VPS4AQ9UN37 CD2AP-201ENST00000359314 5412 ntAPPRIS P1 TSL 1 (best) BASIC19.29■□□□□ 0.68
VPS4AQ9UN37 TDRP-203ENST00000523656 2622 ntTSL 5 BASIC19.29■□□□□ 0.68
VPS4AQ9UN37 ZNRF1-202ENST00000335325 4620 ntAPPRIS P1 TSL 1 (best) BASIC19.29■□□□□ 0.68
VPS4AQ9UN37 SUMF2-201ENST00000275607 1894 ntTSL 1 (best) BASIC19.29■□□□□ 0.68
VPS4AQ9UN37 KCNQ5-202ENST00000355194 6566 ntAPPRIS ALT1 TSL 5 BASIC19.29■□□□□ 0.68
VPS4AQ9UN37 KCNQ5-206ENST00000402622 6596 ntAPPRIS ALT2 TSL 5 BASIC19.29■□□□□ 0.68
VPS4AQ9UN37 SLC35A2-202ENST00000376512 903 ntTSL 2 BASIC19.29■□□□□ 0.68
VPS4AQ9UN37 HOXD12-201ENST00000404162 841 ntTSL 1 (best) BASIC19.29■□□□□ 0.68
VPS4AQ9UN37 AL512625.2-201ENST00000417533 625 ntBASIC19.29■□□□□ 0.68
VPS4AQ9UN37 BX276092.2-201ENST00000417668 665 ntBASIC19.29■□□□□ 0.68
VPS4AQ9UN37 TPT1-AS1-210ENST00000520590 873 ntTSL 5 BASIC19.29■□□□□ 0.68
VPS4AQ9UN37 AC100835.1-201ENST00000565737 498 ntTSL 5 BASIC19.29■□□□□ 0.68
VPS4AQ9UN37 MIR2861-201ENST00000636310 90 ntBASIC19.29■□□□□ 0.68
VPS4AQ9UN37 TPST2-202ENST00000398110 1968 ntAPPRIS P1 TSL 2 BASIC19.29■□□□□ 0.68
VPS4AQ9UN37 DISC1-202ENST00000317586 2636 ntAPPRIS ALT2 TSL 1 (best) BASIC19.29■□□□□ 0.68
VPS4AQ9UN37 RAX-202ENST00000334889 3197 ntAPPRIS P1 TSL 1 (best) BASIC19.29■□□□□ 0.68
VPS4AQ9UN37 OTUB1-211ENST00000543004 1647 ntTSL 5 BASIC19.29■□□□□ 0.68
VPS4AQ9UN37 QTRT1-201ENST00000250237 1317 ntAPPRIS P1 TSL 1 (best) BASIC19.28■□□□□ 0.68
VPS4AQ9UN37 MAPK15-201ENST00000338033 1961 ntAPPRIS P1 TSL 1 (best) BASIC19.28■□□□□ 0.68
VPS4AQ9UN37 INSR-201ENST00000302850 4721 ntAPPRIS P3 TSL 1 (best) BASIC19.28■□□□□ 0.68
VPS4AQ9UN37 NTN5-201ENST00000270235 1836 ntAPPRIS P1 TSL 1 (best) BASIC19.28■□□□□ 0.68
VPS4AQ9UN37 DTX3-208ENST00000551632 1840 ntAPPRIS ALT1 TSL 2 BASIC19.28■□□□□ 0.68
VPS4AQ9UN37 MAP7D2-203ENST00000443379 2476 ntAPPRIS ALT2 TSL 2 BASIC19.28■□□□□ 0.68
VPS4AQ9UN37 GPAA1-201ENST00000355091 2078 ntAPPRIS P1 TSL 1 (best) BASIC19.28■□□□□ 0.68
VPS4AQ9UN37 HAUS4-203ENST00000347758 1428 ntTSL 2 BASIC19.28■□□□□ 0.68
VPS4AQ9UN37 INSM1-201ENST00000310227 2829 ntAPPRIS P1 BASIC19.28■□□□□ 0.68
VPS4AQ9UN37 AC099778.1-201ENST00000568593 1911 ntBASIC19.28■□□□□ 0.68
VPS4AQ9UN37 C16orf74-201ENST00000284245 906 ntAPPRIS P2 TSL 1 (best) BASIC19.28■□□□□ 0.68
VPS4AQ9UN37 LINC01191-201ENST00000412690 844 ntTSL 2 BASIC19.28■□□□□ 0.68
VPS4AQ9UN37 UNC93B4-201ENST00000505679 747 ntBASIC19.28■□□□□ 0.68
VPS4AQ9UN37 ABHD1-207ENST00000621324 1078 ntTSL 5 BASIC19.28■□□□□ 0.68
VPS4AQ9UN37 POLDIP2-202ENST00000618887 1524 ntTSL 2 BASIC19.28■□□□□ 0.68
VPS4AQ9UN37 VCPKMT-202ENST00000395860 1761 ntAPPRIS P1 TSL 1 (best) BASIC19.28■□□□□ 0.68
VPS4AQ9UN37 GNB4-204ENST00000468623 1360 ntAPPRIS P1 TSL 2 BASIC19.28■□□□□ 0.68
VPS4AQ9UN37 IMPDH1-208ENST00000470772 1888 ntAPPRIS ALT1 TSL 5 BASIC19.28■□□□□ 0.68
VPS4AQ9UN37 TMEM175-212ENST00000508204 1399 ntTSL 3 BASIC19.28■□□□□ 0.68
VPS4AQ9UN37 CTDSP2-204ENST00000548823 1368 ntTSL 1 (best) BASIC19.28■□□□□ 0.68
Retrieved 100 of 98,524 protein–RNA pairs in 18.7 ms