Protein–RNA interactions for Protein: Q9NZR4

VSX1, Visual system homeobox 1, humanhuman

Predicted RBP Predictions only

Length 365 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VSX1Q9NZR4 PCBP3-203ENST00000400308 1911 ntTSL 1 (best) BASIC17.88■□□□□ 0.45
VSX1Q9NZR4 PRMT5-204ENST00000397441 2418 ntTSL 2 BASIC17.88■□□□□ 0.45
VSX1Q9NZR4 SH2B3-201ENST00000341259 5406 ntAPPRIS P1 TSL 1 (best) BASIC17.88■□□□□ 0.45
VSX1Q9NZR4 PLSCR3-212ENST00000576201 1965 ntAPPRIS P1 TSL 1 (best) BASIC17.88■□□□□ 0.45
VSX1Q9NZR4 MTMR14-201ENST00000296003 2494 ntAPPRIS P4 TSL 1 (best) BASIC17.88■□□□□ 0.45
VSX1Q9NZR4 KLHL35-201ENST00000376292 1500 ntTSL 1 (best) BASIC17.88■□□□□ 0.45
VSX1Q9NZR4 LBX2-AS1-202ENST00000603175 2083 ntBASIC17.87■□□□□ 0.45
VSX1Q9NZR4 FOXN3-209ENST00000555353 1595 ntAPPRIS P3 TSL 1 (best) BASIC17.87■□□□□ 0.45
VSX1Q9NZR4 PTBP1P-201ENST00000554374 1601 ntBASIC17.87■□□□□ 0.45
VSX1Q9NZR4 DPH1-201ENST00000263083 2221 ntAPPRIS P2 TSL 1 (best) BASIC17.87■□□□□ 0.45
VSX1Q9NZR4 NPNT-214ENST00000514622 2362 ntTSL 2 BASIC17.87■□□□□ 0.45
VSX1Q9NZR4 EEF1D-246ENST00000532741 2387 ntTSL 1 (best) BASIC17.87■□□□□ 0.45
VSX1Q9NZR4 RNPEPL1-201ENST00000270357 5658 ntAPPRIS P1 TSL 1 (best) BASIC17.87■□□□□ 0.45
VSX1Q9NZR4 NDUFS3-207ENST00000529276 558 ntTSL 2 BASIC17.87■□□□□ 0.45
VSX1Q9NZR4 PDCD5-204ENST00000586035 601 ntTSL 3 BASIC17.87■□□□□ 0.45
VSX1Q9NZR4 AC069236.1-201ENST00000604339 616 ntBASIC17.87■□□□□ 0.45
VSX1Q9NZR4 RNASEH2B-206ENST00000611510 1257 ntTSL 5 BASIC17.87■□□□□ 0.45
VSX1Q9NZR4 AC105020.6-201ENST00000621523 1217 ntBASIC17.87■□□□□ 0.45
VSX1Q9NZR4 DALRD3-205ENST00000440857 2014 ntTSL 1 (best) BASIC17.87■□□□□ 0.45
VSX1Q9NZR4 CPLX3-201ENST00000395018 2082 ntAPPRIS P1 TSL 1 (best) BASIC17.87■□□□□ 0.45
VSX1Q9NZR4 LEFTY2-202ENST00000420304 2085 ntTSL 2 BASIC17.87■□□□□ 0.45
VSX1Q9NZR4 KCTD1-202ENST00000408011 2103 ntAPPRIS P1 TSL 1 (best) BASIC17.87■□□□□ 0.45
VSX1Q9NZR4 KCNC2-204ENST00000540018 2168 ntAPPRIS ALT2 TSL 2 BASIC17.87■□□□□ 0.45
VSX1Q9NZR4 PNLIPRP2-204ENST00000591655 1456 ntAPPRIS ALT1 TSL 5 BASIC17.87■□□□□ 0.45
VSX1Q9NZR4 MARCH8-201ENST00000319836 5272 ntAPPRIS P1 TSL 1 (best) BASIC17.87■□□□□ 0.45
VSX1Q9NZR4 YTHDF3-214ENST00000621890 2296 ntTSL 5 BASIC17.87■□□□□ 0.45
VSX1Q9NZR4 SETD6-201ENST00000219315 1553 ntAPPRIS ALT2 TSL 1 (best) BASIC17.87■□□□□ 0.45
VSX1Q9NZR4 GLT8D1-213ENST00000491606 1577 ntAPPRIS P1 TSL 5 BASIC17.87■□□□□ 0.45
VSX1Q9NZR4 NRP2-206ENST00000417189 2386 ntTSL 2 BASIC17.87■□□□□ 0.45
VSX1Q9NZR4 TMEM179-206ENST00000616017 1645 ntBASIC17.87■□□□□ 0.45
VSX1Q9NZR4 CD55-203ENST00000367063 1691 ntAPPRIS ALT2 TSL 1 (best) BASIC17.87■□□□□ 0.45
VSX1Q9NZR4 LMAN1L-202ENST00000379709 1699 ntTSL 1 (best) BASIC17.87■□□□□ 0.45
VSX1Q9NZR4 ROR1-201ENST00000371079 5832 ntAPPRIS P2 TSL 1 (best) BASIC17.86■□□□□ 0.45
VSX1Q9NZR4 KLF2-201ENST00000248071 2018 ntAPPRIS P1 TSL 1 (best) BASIC17.86■□□□□ 0.45
VSX1Q9NZR4 ST6GALNAC6-215ENST00000542456 2018 ntTSL 2 BASIC17.86■□□□□ 0.45
VSX1Q9NZR4 TBC1D4-201ENST00000377625 6182 ntAPPRIS ALT2 TSL 1 (best) BASIC17.86■□□□□ 0.45
VSX1Q9NZR4 CAV2-201ENST00000222693 3301 ntAPPRIS P1 TSL 1 (best) BASIC17.86■□□□□ 0.45
VSX1Q9NZR4 DYNLT3-201ENST00000378578 2217 ntAPPRIS P1 TSL 1 (best) BASIC17.86■□□□□ 0.45
VSX1Q9NZR4 NRXN1-226ENST00000626899 2543 ntTSL 2 BASIC17.86■□□□□ 0.45
VSX1Q9NZR4 TNFRSF18-203ENST00000379268 1179 ntAPPRIS ALT2 TSL 1 (best) BASIC17.86■□□□□ 0.45
VSX1Q9NZR4 KRT18P68-201ENST00000392293 1000 ntBASIC17.86■□□□□ 0.45
VSX1Q9NZR4 KLRG2-202ENST00000393039 1148 ntTSL 5 BASIC17.86■□□□□ 0.45
VSX1Q9NZR4 STAG3L3-201ENST00000423834 1262 ntTSL 2 BASIC17.86■□□□□ 0.45
VSX1Q9NZR4 AC007322.1-201ENST00000426983 750 ntBASIC17.86■□□□□ 0.45
VSX1Q9NZR4 APTR-203ENST00000430801 583 ntTSL 5 BASIC17.86■□□□□ 0.45
VSX1Q9NZR4 ARFRP1-202ENST00000607873 1061 ntTSL 2 BASIC17.86■□□□□ 0.45
VSX1Q9NZR4 KANSL1-218ENST00000638275 5352 ntTSL 5 BASIC17.86■□□□□ 0.45
VSX1Q9NZR4 ZXDB-201ENST00000374888 5894 ntAPPRIS P1 BASIC17.86■□□□□ 0.45
VSX1Q9NZR4 FBXO6-201ENST00000376753 1520 ntAPPRIS P1 TSL 1 (best) BASIC17.86■□□□□ 0.45
VSX1Q9NZR4 RIMKLB-202ENST00000357529 5830 ntAPPRIS P1 TSL 5 BASIC17.86■□□□□ 0.45
VSX1Q9NZR4 C17orf62-204ENST00000437807 2242 ntAPPRIS P1 TSL 2 BASIC17.86■□□□□ 0.45
VSX1Q9NZR4 GATA5-201ENST00000252997 2595 ntAPPRIS P1 TSL 1 (best) BASIC17.86■□□□□ 0.45
VSX1Q9NZR4 PAN3-201ENST00000380958 2833 ntAPPRIS P2 TSL 5 BASIC17.85■□□□□ 0.45
VSX1Q9NZR4 CNOT6-201ENST00000261951 6176 ntAPPRIS P1 TSL 5 BASIC17.85■□□□□ 0.45
VSX1Q9NZR4 BCKDK-202ENST00000287507 1907 ntTSL 1 (best) BASIC17.85■□□□□ 0.45
VSX1Q9NZR4 SOCS1-201ENST00000332029 1225 ntAPPRIS P1 TSL 1 (best) BASIC17.85■□□□□ 0.45
VSX1Q9NZR4 MGST3-205ENST00000367889 1015 ntAPPRIS P1 TSL 1 (best) BASIC17.85■□□□□ 0.45
VSX1Q9NZR4 KANSL1-AS1-201ENST00000398275 517 ntTSL 1 (best) BASIC17.85■□□□□ 0.45
VSX1Q9NZR4 RHOA-202ENST00000418115 2031 ntAPPRIS P1 TSL 1 (best) BASIC17.85■□□□□ 0.45
VSX1Q9NZR4 FAM76A-205ENST00000419687 1661 ntTSL 2 BASIC17.85■□□□□ 0.45
VSX1Q9NZR4 EIF2B1-204ENST00000537073 1768 ntTSL 2 BASIC17.85■□□□□ 0.45
VSX1Q9NZR4 CYP2T3P-201ENST00000601990 817 ntBASIC17.85■□□□□ 0.45
VSX1Q9NZR4 HIST1H2AL-201ENST00000613174 393 ntAPPRIS P1 BASIC17.85■□□□□ 0.45
VSX1Q9NZR4 MDK-213ENST00000617138 635 ntTSL 2 BASIC17.85■□□□□ 0.45
VSX1Q9NZR4 SLC35A2-211ENST00000634461 533 ntTSL 4 BASIC17.85■□□□□ 0.45
VSX1Q9NZR4 AC008694.1-202ENST00000636953 945 ntBASIC17.85■□□□□ 0.45
VSX1Q9NZR4 WT1-212ENST00000640146 1554 ntAPPRIS P3 TSL 1 (best) BASIC17.85■□□□□ 0.45
VSX1Q9NZR4 SUDS3-204ENST00000543473 4897 ntAPPRIS P1 TSL 1 (best) BASIC17.85■□□□□ 0.45
VSX1Q9NZR4 AGTR1-209ENST00000497524 2359 ntAPPRIS P1 TSL 1 (best) BASIC17.84■□□□□ 0.45
VSX1Q9NZR4 FBXO27-201ENST00000292853 2330 ntAPPRIS P2 TSL 1 (best) BASIC17.84■□□□□ 0.45
VSX1Q9NZR4 TOR1A-201ENST00000351698 2076 ntAPPRIS P1 TSL 1 (best) BASIC17.84■□□□□ 0.45
VSX1Q9NZR4 PDLIM5-205ENST00000380180 2020 ntTSL 1 (best) BASIC17.84■□□□□ 0.45
VSX1Q9NZR4 FFAR3-201ENST00000327809 1796 ntAPPRIS P1 TSL 1 (best) BASIC17.84■□□□□ 0.45
VSX1Q9NZR4 PNMA8B-202ENST00000599531 5308 ntAPPRIS P1 BASIC17.84■□□□□ 0.45
VSX1Q9NZR4 SUSD1-204ENST00000374270 3124 ntAPPRIS P3 TSL 1 (best) BASIC17.84■□□□□ 0.45
VSX1Q9NZR4 MYO15B-232ENST00000610510 9195 ntAPPRIS P1 TSL 5 BASIC17.84■□□□□ 0.45
VSX1Q9NZR4 ENTPD2-201ENST00000312665 1500 ntTSL 1 (best) BASIC17.84■□□□□ 0.45
VSX1Q9NZR4 CYB561D2-205ENST00000425346 1319 ntAPPRIS P1 TSL 1 (best) BASIC17.84■□□□□ 0.45
VSX1Q9NZR4 GDF15-201ENST00000252809 1200 ntAPPRIS P1 TSL 1 (best) BASIC17.84■□□□□ 0.45
VSX1Q9NZR4 CD99P1-203ENST00000431582 602 ntTSL 4 BASIC17.84■□□□□ 0.45
VSX1Q9NZR4 MYO19-221ENST00000620640 1186 ntTSL 2 BASIC17.84■□□□□ 0.45
VSX1Q9NZR4 NFE2L1-204ENST00000536222 2172 ntTSL 2 BASIC17.84■□□□□ 0.45
VSX1Q9NZR4 DNAJC1-202ENST00000376980 2106 ntAPPRIS P1 TSL 1 (best) BASIC17.84■□□□□ 0.45
VSX1Q9NZR4 NFIL3-201ENST00000297689 2085 ntAPPRIS P1 TSL 1 (best) BASIC17.84■□□□□ 0.45
VSX1Q9NZR4 BCKDK-203ENST00000394950 1997 ntTSL 2 BASIC17.84■□□□□ 0.45
VSX1Q9NZR4 ACBD4-203ENST00000398322 1986 ntAPPRIS P1 TSL 1 (best) BASIC17.84■□□□□ 0.45
VSX1Q9NZR4 RRNAD1-202ENST00000368218 1802 ntAPPRIS ALT2 TSL 3 BASIC17.84■□□□□ 0.45
VSX1Q9NZR4 SNX24-211ENST00000513881 1563 ntTSL 1 (best) BASIC17.83■□□□□ 0.45
VSX1Q9NZR4 GALNT10-201ENST00000297107 5961 ntAPPRIS P1 TSL 1 (best) BASIC17.83■□□□□ 0.45
VSX1Q9NZR4 FUZ-212ENST00000528094 1479 ntTSL 2 BASIC17.83■□□□□ 0.45
VSX1Q9NZR4 EP300-201ENST00000263253 9587 ntAPPRIS P1 TSL 1 (best) BASIC17.83■□□□□ 0.45
VSX1Q9NZR4 PPP1R3F-201ENST00000055335 3421 ntAPPRIS P1 TSL 2 BASIC17.83■□□□□ 0.45
VSX1Q9NZR4 ANKRD16-203ENST00000380094 2738 ntAPPRIS P1 TSL 2 BASIC17.83■□□□□ 0.45
VSX1Q9NZR4 BEST4-201ENST00000372207 2047 ntAPPRIS P1 TSL 1 (best) BASIC17.83■□□□□ 0.45
VSX1Q9NZR4 MARC2-201ENST00000359316 1335 ntTSL 1 (best) BASIC17.83■□□□□ 0.44
VSX1Q9NZR4 CFD-201ENST00000327726 1201 ntAPPRIS P3 TSL 1 (best) BASIC17.83■□□□□ 0.44
VSX1Q9NZR4 ZNF644-203ENST00000361321 1253 ntTSL 2 BASIC17.83■□□□□ 0.44
VSX1Q9NZR4 METTL26-203ENST00000397664 604 ntTSL 2 BASIC17.83■□□□□ 0.44
VSX1Q9NZR4 RPS15-206ENST00000589656 473 ntAPPRIS ALT1 TSL 5 BASIC17.83■□□□□ 0.44
VSX1Q9NZR4 OR10C1-204ENST00000622521 1039 ntBASIC17.83■□□□□ 0.44
Retrieved 100 of 98,524 protein–RNA pairs in 45.6 ms