Protein–RNA interactions for Protein: Q9HCM9

TRIM39, E3 ubiquitin-protein ligase TRIM39, humanhuman

Predictions only

Length 518 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM39Q9HCM9 ZNF668-207ENST00000535577 2396 ntAPPRIS P1 TSL 5 BASIC19.84■□□□□ 0.77
TRIM39Q9HCM9 KCNMA1-293ENST00000640969 5789 ntAPPRIS ALT2 TSL 5 BASIC19.84■□□□□ 0.77
TRIM39Q9HCM9 WASH6P-203ENST00000460206 1826 ntTSL 5 BASIC19.84■□□□□ 0.77
TRIM39Q9HCM9 MAL-201ENST00000309988 1112 ntAPPRIS P1 TSL 1 (best) BASIC19.84■□□□□ 0.77
TRIM39Q9HCM9 HLA-G-202ENST00000376815 851 ntBASIC19.84■□□□□ 0.77
TRIM39Q9HCM9 HLA-G-203ENST00000376818 1127 ntBASIC19.84■□□□□ 0.77
TRIM39Q9HCM9 CD99-203ENST00000381184 918 ntAPPRIS ALT2 TSL 5 BASIC19.84■□□□□ 0.77
TRIM39Q9HCM9 CHCHD10-201ENST00000401675 691 ntAPPRIS P1 TSL 5 BASIC19.84■□□□□ 0.77
TRIM39Q9HCM9 LCN6-203ENST00000476567 1015 ntTSL 1 (best) BASIC19.84■□□□□ 0.77
TRIM39Q9HCM9 C17orf50-201ENST00000603305 569 ntTSL 3 BASIC19.84■□□□□ 0.77
TRIM39Q9HCM9 C17orf50-203ENST00000605587 1018 ntAPPRIS P1 TSL 1 (best) BASIC19.84■□□□□ 0.77
TRIM39Q9HCM9 AC006557.6-201ENST00000623071 864 ntBASIC19.84■□□□□ 0.77
TRIM39Q9HCM9 ESR2-204ENST00000353772 2454 ntTSL 1 (best) BASIC19.84■□□□□ 0.77
TRIM39Q9HCM9 ARSE-205ENST00000540563 1990 ntTSL 2 BASIC19.84■□□□□ 0.77
TRIM39Q9HCM9 DUSP15-201ENST00000278979 1732 ntTSL 2 BASIC19.84■□□□□ 0.77
TRIM39Q9HCM9 MGAT1-204ENST00000427865 1919 ntAPPRIS P1 TSL 2 BASIC19.84■□□□□ 0.77
TRIM39Q9HCM9 TEX45-201ENST00000361664 1679 ntAPPRIS P2 TSL 1 (best) BASIC19.84■□□□□ 0.77
TRIM39Q9HCM9 ZNF652-202ENST00000430262 4701 ntAPPRIS P1 TSL 1 (best) BASIC19.84■□□□□ 0.77
TRIM39Q9HCM9 MGAT5B-209ENST00000569840 4492 ntAPPRIS ALT1 TSL 5 BASIC19.84■□□□□ 0.77
TRIM39Q9HCM9 SUPT4H1-202ENST00000577396 1643 ntTSL 2 BASIC19.84■□□□□ 0.77
TRIM39Q9HCM9 ADRA1B-201ENST00000306675 2047 ntAPPRIS P1 TSL 1 (best) BASIC19.83■□□□□ 0.77
TRIM39Q9HCM9 ETV2-202ENST00000379026 1571 ntAPPRIS ALT2 TSL 2 BASIC19.83■□□□□ 0.77
TRIM39Q9HCM9 KLHDC1-201ENST00000359332 2691 ntAPPRIS P1 TSL 1 (best) BASIC19.83■□□□□ 0.77
TRIM39Q9HCM9 NDRG2-242ENST00000555158 2216 ntAPPRIS ALT1 TSL 1 (best) BASIC19.83■□□□□ 0.77
TRIM39Q9HCM9 MFSD10-211ENST00000514800 1776 ntTSL 5 BASIC19.83■□□□□ 0.77
TRIM39Q9HCM9 ISYNA1-201ENST00000338128 2420 ntAPPRIS P1 TSL 1 (best) BASIC19.83■□□□□ 0.77
TRIM39Q9HCM9 AC068473.1-201ENST00000317008 1111 ntTSL 2 BASIC19.83■□□□□ 0.77
TRIM39Q9HCM9 TRA2B-203ENST00000382191 976 ntTSL 2 BASIC19.83■□□□□ 0.77
TRIM39Q9HCM9 MAGI2-AS3-202ENST00000422093 762 ntTSL 1 (best) BASIC19.83■□□□□ 0.77
TRIM39Q9HCM9 AC226101.2-201ENST00000458252 747 ntTSL 2 BASIC19.83■□□□□ 0.77
TRIM39Q9HCM9 CAMLG-202ENST00000514518 895 ntTSL 1 (best) BASIC19.83■□□□□ 0.77
TRIM39Q9HCM9 AC105020.4-201ENST00000569467 563 ntTSL 4 BASIC19.83■□□□□ 0.77
TRIM39Q9HCM9 GLG1-214ENST00000627032 2147 ntTSL 5 BASIC19.83■□□□□ 0.77
TRIM39Q9HCM9 SPEG-203ENST00000396688 1457 ntTSL 3 BASIC19.83■□□□□ 0.76
TRIM39Q9HCM9 PATZ1-201ENST00000215919 2516 ntTSL 1 (best) BASIC19.83■□□□□ 0.76
TRIM39Q9HCM9 PMS1-222ENST00000639501 2506 ntTSL 5 BASIC19.83■□□□□ 0.76
TRIM39Q9HCM9 KRT8P20-201ENST00000423953 1409 ntBASIC19.83■□□□□ 0.76
TRIM39Q9HCM9 SCRT1-201ENST00000569446 3779 ntAPPRIS P1 TSL 1 (best) BASIC19.83■□□□□ 0.76
TRIM39Q9HCM9 ABLIM2-205ENST00000428004 2573 ntTSL 1 (best) BASIC19.83■□□□□ 0.76
TRIM39Q9HCM9 FAM129C-212ENST00000601861 2180 ntAPPRIS ALT2 TSL 2 BASIC19.83■□□□□ 0.76
TRIM39Q9HCM9 BABAM1-213ENST00000601043 1366 ntAPPRIS P3 TSL 2 BASIC19.83■□□□□ 0.76
TRIM39Q9HCM9 CCSAP-203ENST00000366687 5089 ntAPPRIS P1 TSL 1 (best) BASIC19.82■□□□□ 0.76
TRIM39Q9HCM9 AC020907.5-201ENST00000624372 1936 ntBASIC19.82■□□□□ 0.76
TRIM39Q9HCM9 KCNIP2-207ENST00000358038 2489 ntAPPRIS ALT1 TSL 1 (best) BASIC19.82■□□□□ 0.76
TRIM39Q9HCM9 CLK3-202ENST00000395066 2621 ntTSL 1 (best) BASIC19.82■□□□□ 0.76
TRIM39Q9HCM9 CD247-202ENST00000392122 1678 ntAPPRIS ALT1 TSL 1 (best) BASIC19.82■□□□□ 0.76
TRIM39Q9HCM9 MAFF-204ENST00000426621 2216 ntAPPRIS P1 TSL 4 BASIC19.82■□□□□ 0.76
TRIM39Q9HCM9 WEE1-202ENST00000450114 2799 ntAPPRIS P1 TSL 1 (best) BASIC19.82■□□□□ 0.76
TRIM39Q9HCM9 EPN2-212ENST00000575595 1491 ntTSL 2 BASIC19.82■□□□□ 0.76
TRIM39Q9HCM9 CAVIN3-201ENST00000303927 1174 ntAPPRIS P1 TSL 1 (best) BASIC19.82■□□□□ 0.76
TRIM39Q9HCM9 NDUFB1-201ENST00000329559 528 ntTSL 1 (best) BASIC19.82■□□□□ 0.76
TRIM39Q9HCM9 GGTLC1-203ENST00000335694 1046 ntAPPRIS P1 TSL 1 (best) BASIC19.82■□□□□ 0.76
TRIM39Q9HCM9 C6orf48-205ENST00000375640 1053 ntAPPRIS P1 TSL 1 (best) BASIC19.82■□□□□ 0.76
TRIM39Q9HCM9 SCARA5-203ENST00000518030 1074 ntTSL 1 (best) BASIC19.82■□□□□ 0.76
TRIM39Q9HCM9 SEC23A-AS1-201ENST00000557350 500 ntTSL 3 BASIC19.82■□□□□ 0.76
TRIM39Q9HCM9 EML2-AS1-202ENST00000591087 838 ntTSL 3 BASIC19.82■□□□□ 0.76
TRIM39Q9HCM9 AC008687.6-201ENST00000596318 630 ntBASIC19.82■□□□□ 0.76
TRIM39Q9HCM9 AL031963.3-201ENST00000606441 850 ntBASIC19.82■□□□□ 0.76
TRIM39Q9HCM9 KRT8P17-201ENST00000453110 1448 ntBASIC19.82■□□□□ 0.76
TRIM39Q9HCM9 ODC1-202ENST00000405333 1943 ntAPPRIS P1 TSL 2 BASIC19.82■□□□□ 0.76
TRIM39Q9HCM9 HOXC13-201ENST00000243056 2423 ntAPPRIS P1 TSL 1 (best) BASIC19.82■□□□□ 0.76
TRIM39Q9HCM9 DENND6A-201ENST00000311128 4655 ntAPPRIS P1 TSL 1 (best) BASIC19.82■□□□□ 0.76
TRIM39Q9HCM9 RIPPLY3-201ENST00000329553 2235 ntAPPRIS P1 TSL 1 (best) BASIC19.82■□□□□ 0.76
TRIM39Q9HCM9 HSD11B1L-219ENST00000581893 1540 ntTSL 1 (best) BASIC19.81■□□□□ 0.76
TRIM39Q9HCM9 LRRC29-209ENST00000629962 1303 ntAPPRIS P1 TSL 5 BASIC19.81■□□□□ 0.76
TRIM39Q9HCM9 DNAAF4-201ENST00000321149 1993 ntAPPRIS P1 TSL 1 (best) BASIC19.81■□□□□ 0.76
TRIM39Q9HCM9 ENTPD6-203ENST00000376652 2750 ntAPPRIS P3 TSL 1 (best) BASIC19.81■□□□□ 0.76
TRIM39Q9HCM9 PLEKHB1-204ENST00000398494 2061 ntAPPRIS ALT1 TSL 1 (best) BASIC19.81■□□□□ 0.76
TRIM39Q9HCM9 WDR74-202ENST00000311713 1153 ntTSL 1 (best) BASIC19.81■□□□□ 0.76
TRIM39Q9HCM9 ZDHHC12-202ENST00000372667 1187 ntTSL 5 BASIC19.81■□□□□ 0.76
TRIM39Q9HCM9 INS-203ENST00000397262 639 ntAPPRIS P1 TSL 1 (best) BASIC19.81■□□□□ 0.76
TRIM39Q9HCM9 ABHD17AP6-201ENST00000458502 1044 ntBASIC19.81■□□□□ 0.76
TRIM39Q9HCM9 CRIP2-202ENST00000483017 1176 ntTSL 2 BASIC19.81■□□□□ 0.76
TRIM39Q9HCM9 COX4I1-202ENST00000561569 716 ntAPPRIS P1 TSL 2 BASIC19.81■□□□□ 0.76
TRIM39Q9HCM9 NAT14-204ENST00000591590 1011 ntTSL 1 (best) BASIC19.81■□□□□ 0.76
TRIM39Q9HCM9 AC120498.8-201ENST00000614275 531 ntBASIC19.81■□□□□ 0.76
TRIM39Q9HCM9 CAV3-201ENST00000343849 1431 ntAPPRIS P1 TSL 1 (best) BASIC19.81■□□□□ 0.76
TRIM39Q9HCM9 HOXB2-201ENST00000330070 1562 ntAPPRIS P1 TSL 1 (best) BASIC19.81■□□□□ 0.76
TRIM39Q9HCM9 CDKN1C-203ENST00000430149 1570 ntAPPRIS P3 TSL 1 (best) BASIC19.81■□□□□ 0.76
TRIM39Q9HCM9 SEPT7-206ENST00000435235 1584 ntTSL 2 BASIC19.81■□□□□ 0.76
TRIM39Q9HCM9 FFAR1-201ENST00000246553 2311 ntAPPRIS P1 BASIC19.81■□□□□ 0.76
TRIM39Q9HCM9 GPS2-201ENST00000380728 1379 ntAPPRIS P1 TSL 1 (best) BASIC19.81■□□□□ 0.76
TRIM39Q9HCM9 FEM1AP1-201ENST00000431297 1995 ntBASIC19.81■□□□□ 0.76
TRIM39Q9HCM9 SLC46A3-202ENST00000380814 2121 ntAPPRIS ALT1 TSL 1 (best) BASIC19.81■□□□□ 0.76
TRIM39Q9HCM9 TEX22-201ENST00000451127 2571 ntAPPRIS P1 TSL 2 BASIC19.81■□□□□ 0.76
TRIM39Q9HCM9 ARFRP1-214ENST00000622789 2559 ntAPPRIS P1 TSL 1 (best) BASIC19.81■□□□□ 0.76
TRIM39Q9HCM9 LINC01011-201ENST00000445000 2811 ntTSL 2 BASIC19.8■□□□□ 0.76
TRIM39Q9HCM9 AC073314.1-201ENST00000568729 2216 ntBASIC19.8■□□□□ 0.76
TRIM39Q9HCM9 MYO1D-213ENST00000583621 1916 ntTSL 1 (best) BASIC19.8■□□□□ 0.76
TRIM39Q9HCM9 GNS-207ENST00000542058 2020 ntAPPRIS ALT2 TSL 2 BASIC19.8■□□□□ 0.76
TRIM39Q9HCM9 RASSF7-204ENST00000431809 1745 ntAPPRIS ALT2 TSL 5 BASIC19.8■□□□□ 0.76
TRIM39Q9HCM9 TTC39C-202ENST00000317571 2442 ntAPPRIS ALT2 TSL 1 (best) BASIC19.8■□□□□ 0.76
TRIM39Q9HCM9 PTPMT1-202ENST00000326674 768 ntAPPRIS P1 TSL 1 (best) BASIC19.8■□□□□ 0.76
TRIM39Q9HCM9 CABP2-202ENST00000353903 789 ntAPPRIS P1 TSL 5 BASIC19.8■□□□□ 0.76
TRIM39Q9HCM9 RGCC-201ENST00000379359 960 ntAPPRIS P1 TSL 1 (best) BASIC19.8■□□□□ 0.76
TRIM39Q9HCM9 AC073912.1-201ENST00000546264 587 ntTSL 3 BASIC19.8■□□□□ 0.76
TRIM39Q9HCM9 AC005225.2-202ENST00000617980 408 ntTSL 4 BASIC19.8■□□□□ 0.76
TRIM39Q9HCM9 ITM2C-210ENST00000620962 501 ntBASIC19.8■□□□□ 0.76
TRIM39Q9HCM9 TARDBP-228ENST00000629725 1031 ntTSL 5 BASIC19.8■□□□□ 0.76
TRIM39Q9HCM9 SP3-208ENST00000640958 2142 ntAPPRIS ALT2 TSL 1 (best) BASIC19.8■□□□□ 0.76
Retrieved 100 of 98,524 protein–RNA pairs in 25.6 ms