Protein–RNA interactions for Protein: Q96KR7

PHACTR3, Phosphatase and actin regulator 3, humanhuman

Predictions only

Length 559 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PHACTR3Q96KR7 STK24-AS1-201ENST00000434547 1278 ntTSL 1 (best) BASIC26.35■■□□□ 1.81
PHACTR3Q96KR7 HOXC13-AS-201ENST00000512916 1408 ntTSL 3 BASIC26.35■■□□□ 1.81
PHACTR3Q96KR7 TMEM9B-203ENST00000528117 949 ntTSL 2 BASIC26.35■■□□□ 1.81
PHACTR3Q96KR7 ARMC4P1-202ENST00000576034 643 ntTSL 2 BASIC26.35■■□□□ 1.81
PHACTR3Q96KR7 DCAKD-205ENST00000588499 990 ntAPPRIS P1 TSL 2 BASIC26.35■■□□□ 1.81
PHACTR3Q96KR7 LRIG1-202ENST00000383703 5283 ntTSL 1 (best) BASIC26.35■■□□□ 1.81
PHACTR3Q96KR7 UBE2B-201ENST00000265339 2515 ntAPPRIS P1 TSL 1 (best) BASIC26.35■■□□□ 1.81
PHACTR3Q96KR7 GPAA1-201ENST00000355091 2078 ntAPPRIS P1 TSL 1 (best) BASIC26.35■■□□□ 1.81
PHACTR3Q96KR7 HSDL1-202ENST00000434463 1493 ntTSL 2 BASIC26.35■■□□□ 1.81
PHACTR3Q96KR7 FBXO28-202ENST00000424254 1334 ntTSL 1 (best) BASIC26.35■■□□□ 1.81
PHACTR3Q96KR7 ZNF48-201ENST00000320159 3234 ntAPPRIS P1 TSL 1 (best) BASIC26.35■■□□□ 1.81
PHACTR3Q96KR7 CTCF-202ENST00000401394 2978 ntTSL 1 (best) BASIC26.34■■□□□ 1.81
PHACTR3Q96KR7 AVPR2-202ENST00000358927 1763 ntAPPRIS P1 TSL 5 BASIC26.34■■□□□ 1.81
PHACTR3Q96KR7 CALML5-201ENST00000380332 859 ntAPPRIS P1 BASIC26.34■■□□□ 1.81
PHACTR3Q96KR7 DNPH1-202ENST00000393987 796 ntTSL 2 BASIC26.34■■□□□ 1.81
PHACTR3Q96KR7 LRRC75A-AS1-225ENST00000581913 1091 ntTSL 2 BASIC26.34■■□□□ 1.81
PHACTR3Q96KR7 B4GALNT1-213ENST00000552350 1649 ntTSL 4 BASIC26.34■■□□□ 1.81
PHACTR3Q96KR7 RAP2C-202ENST00000370874 2333 ntAPPRIS P1 TSL 2 BASIC26.34■■□□□ 1.81
PHACTR3Q96KR7 DNAJB11-202ENST00000439351 2398 ntAPPRIS P1 TSL 1 (best) BASIC26.34■■□□□ 1.81
PHACTR3Q96KR7 DYNLT3-201ENST00000378578 2217 ntAPPRIS P1 TSL 1 (best) BASIC26.34■■□□□ 1.81
PHACTR3Q96KR7 ME3-202ENST00000393324 2240 ntAPPRIS P1 TSL 1 (best) BASIC26.34■■□□□ 1.81
PHACTR3Q96KR7 PFKFB3-202ENST00000360521 1964 ntAPPRIS P2 TSL 5 BASIC26.33■■□□□ 1.81
PHACTR3Q96KR7 PSMG1-202ENST00000380900 907 ntTSL 1 (best) BASIC26.33■■□□□ 1.81
PHACTR3Q96KR7 F2R-202ENST00000505600 442 ntTSL 2 BASIC26.33■■□□□ 1.81
PHACTR3Q96KR7 B3GAT3-205ENST00000534026 1120 ntTSL 2 BASIC26.33■■□□□ 1.81
PHACTR3Q96KR7 ICAM2-207ENST00000579687 1154 ntAPPRIS P1 TSL 3 BASIC26.33■■□□□ 1.81
PHACTR3Q96KR7 DMAP1-202ENST00000361745 1545 ntAPPRIS P1 TSL 1 (best) BASIC26.33■■□□□ 1.81
PHACTR3Q96KR7 C19orf84-202ENST00000574814 1318 ntAPPRIS P2 TSL 1 (best) BASIC26.33■■□□□ 1.81
PHACTR3Q96KR7 NDRG2-215ENST00000553503 2162 ntAPPRIS ALT1 TSL 1 (best) BASIC26.33■■□□□ 1.81
PHACTR3Q96KR7 PAQR6-215ENST00000623241 1961 ntTSL 1 (best) BASIC26.33■■□□□ 1.8
PHACTR3Q96KR7 TMEM218-213ENST00000531909 1828 ntAPPRIS P1 TSL 1 (best) BASIC26.32■■□□□ 1.8
PHACTR3Q96KR7 PLEKHB1-204ENST00000398494 2061 ntAPPRIS ALT1 TSL 1 (best) BASIC26.32■■□□□ 1.8
PHACTR3Q96KR7 CAMKK2-206ENST00000402834 2051 ntAPPRIS P4 TSL 1 (best) BASIC26.32■■□□□ 1.8
PHACTR3Q96KR7 TREX2-206ENST00000370232 1864 ntTSL 1 (best) BASIC26.32■■□□□ 1.8
PHACTR3Q96KR7 FFAR1-201ENST00000246553 2311 ntAPPRIS P1 BASIC26.32■■□□□ 1.8
PHACTR3Q96KR7 DET1-207ENST00000564406 2315 ntTSL 2 BASIC26.32■■□□□ 1.8
PHACTR3Q96KR7 FLCN-203ENST00000389169 1692 ntTSL 1 (best) BASIC26.32■■□□□ 1.8
PHACTR3Q96KR7 ATP6V0B-213ENST00000532642 1685 ntTSL 2 BASIC26.32■■□□□ 1.8
PHACTR3Q96KR7 SLC35B2-205ENST00000538577 1909 ntTSL 2 BASIC26.32■■□□□ 1.8
PHACTR3Q96KR7 MYO1D-213ENST00000583621 1916 ntTSL 1 (best) BASIC26.32■■□□□ 1.8
PHACTR3Q96KR7 AC020907.5-201ENST00000624372 1936 ntBASIC26.32■■□□□ 1.8
PHACTR3Q96KR7 LGALS9C-201ENST00000328114 1730 ntAPPRIS P2 TSL 1 (best) BASIC26.32■■□□□ 1.8
PHACTR3Q96KR7 MDK-205ENST00000405308 1166 ntAPPRIS P2 TSL 2 BASIC26.32■■□□□ 1.8
PHACTR3Q96KR7 SMG1P1-207ENST00000446662 852 ntTSL 5 BASIC26.32■■□□□ 1.8
PHACTR3Q96KR7 TNFRSF18-204ENST00000486728 727 ntAPPRIS ALT2 TSL 1 (best) BASIC26.32■■□□□ 1.8
PHACTR3Q96KR7 AC080023.1-201ENST00000526906 803 ntTSL 2 BASIC26.32■■□□□ 1.8
PHACTR3Q96KR7 TMEM72-203ENST00000544540 1018 ntTSL 1 (best) BASIC26.32■■□□□ 1.8
PHACTR3Q96KR7 PNN-205ENST00000556530 601 ntTSL 2 BASIC26.32■■□□□ 1.8
PHACTR3Q96KR7 AC110285.5-201ENST00000611501 352 ntBASIC26.32■■□□□ 1.8
PHACTR3Q96KR7 ST6GALNAC6-215ENST00000542456 2018 ntTSL 2 BASIC26.32■■□□□ 1.8
PHACTR3Q96KR7 GYG1-202ENST00000345003 2052 ntTSL 1 (best) BASIC26.32■■□□□ 1.8
PHACTR3Q96KR7 CXCL3-201ENST00000296026 1075 ntAPPRIS P1 TSL 1 (best) BASIC26.31■■□□□ 1.8
PHACTR3Q96KR7 RHOC-203ENST00000369632 1026 ntAPPRIS P1 TSL 3 BASIC26.31■■□□□ 1.8
PHACTR3Q96KR7 NKAIN4-201ENST00000370307 793 ntTSL 5 BASIC26.31■■□□□ 1.8
PHACTR3Q96KR7 IL17RC-205ENST00000413608 2147 ntAPPRIS ALT2 TSL 1 (best) BASIC26.31■■□□□ 1.8
PHACTR3Q96KR7 NELFE-206ENST00000444811 1202 ntAPPRIS ALT2 TSL 2 BASIC26.31■■□□□ 1.8
PHACTR3Q96KR7 HOXB-AS3-204ENST00000466037 522 ntTSL 3 BASIC26.31■■□□□ 1.8
PHACTR3Q96KR7 MRPL2-207ENST00000487429 905 ntTSL 1 (best) BASIC26.31■■□□□ 1.8
PHACTR3Q96KR7 HGNC:18790-208ENST00000506380 798 ntAPPRIS P1 TSL 3 BASIC26.31■■□□□ 1.8
PHACTR3Q96KR7 AC026427.1-201ENST00000508993 555 ntTSL 3 BASIC26.31■■□□□ 1.8
PHACTR3Q96KR7 NOXO1-205ENST00000566005 1144 ntTSL 1 (best) BASIC26.31■■□□□ 1.8
PHACTR3Q96KR7 AP2M1-203ENST00000411763 1577 ntTSL 5 BASIC26.31■■□□□ 1.8
PHACTR3Q96KR7 TMEM62-201ENST00000260403 2771 ntAPPRIS P1 TSL 1 (best) BASIC26.31■■□□□ 1.8
PHACTR3Q96KR7 ARHGDIA-201ENST00000269321 1906 ntAPPRIS P1 TSL 1 (best) BASIC26.31■■□□□ 1.8
PHACTR3Q96KR7 CACNB2-203ENST00000352115 1911 ntTSL 1 (best) BASIC26.31■■□□□ 1.8
PHACTR3Q96KR7 SLC16A10-202ENST00000368851 2508 ntAPPRIS P1 TSL 1 (best) BASIC26.31■■□□□ 1.8
PHACTR3Q96KR7 TEAD1-206ENST00000527636 2544 ntAPPRIS ALT2 TSL 1 (best) BASIC26.31■■□□□ 1.8
PHACTR3Q96KR7 NMRAL1-213ENST00000574733 1719 ntAPPRIS P1 TSL 5 BASIC26.31■■□□□ 1.8
PHACTR3Q96KR7 ALG9-215ENST00000616540 2069 ntTSL 1 (best) BASIC26.3■■□□□ 1.8
PHACTR3Q96KR7 ACOT2-201ENST00000238651 1774 ntTSL 1 (best) BASIC26.3■■□□□ 1.8
PHACTR3Q96KR7 RUFY3-203ENST00000417478 2143 ntTSL 1 (best) BASIC26.3■■□□□ 1.8
PHACTR3Q96KR7 GLT8D1-213ENST00000491606 1577 ntAPPRIS P1 TSL 5 BASIC26.3■■□□□ 1.8
PHACTR3Q96KR7 ANAPC4-201ENST00000315368 2685 ntAPPRIS P3 TSL 1 (best) BASIC26.3■■□□□ 1.8
PHACTR3Q96KR7 S100A14-203ENST00000368701 1080 ntAPPRIS P1 TSL 2 BASIC26.3■■□□□ 1.8
PHACTR3Q96KR7 CCDC107-202ENST00000378406 1016 ntAPPRIS ALT2 TSL 2 BASIC26.3■■□□□ 1.8
PHACTR3Q96KR7 METTL21A-204ENST00000425132 869 ntTSL 2 BASIC26.3■■□□□ 1.8
PHACTR3Q96KR7 ZNF436-AS1-202ENST00000437367 606 ntTSL 2 BASIC26.3■■□□□ 1.8
PHACTR3Q96KR7 UBE2K-204ENST00000503368 891 ntTSL 1 (best) BASIC26.3■■□□□ 1.8
PHACTR3Q96KR7 CAVIN3-203ENST00000530979 957 ntTSL 2 BASIC26.3■■□□□ 1.8
PHACTR3Q96KR7 REXO2-216ENST00000544196 452 ntTSL 3 BASIC26.3■■□□□ 1.8
PHACTR3Q96KR7 CORO1B-210ENST00000627576 960 ntTSL 5 BASIC26.3■■□□□ 1.8
PHACTR3Q96KR7 NCLN-205ENST00000590671 2070 ntTSL 2 BASIC26.3■■□□□ 1.8
PHACTR3Q96KR7 EED-201ENST00000263360 2223 ntAPPRIS P1 TSL 1 (best) BASIC26.3■■□□□ 1.8
PHACTR3Q96KR7 TMEM163-201ENST00000281924 1892 ntAPPRIS P1 TSL 1 (best) BASIC26.3■■□□□ 1.8
PHACTR3Q96KR7 C5orf17-202ENST00000512559 1984 ntTSL 2 BASIC26.29■■□□□ 1.8
PHACTR3Q96KR7 AP005212.1-201ENST00000581547 1997 ntBASIC26.29■■□□□ 1.8
PHACTR3Q96KR7 SLC46A3-202ENST00000380814 2121 ntAPPRIS ALT1 TSL 1 (best) BASIC26.29■■□□□ 1.8
PHACTR3Q96KR7 MKRN1-208ENST00000474576 1661 ntTSL 5 BASIC26.29■■□□□ 1.8
PHACTR3Q96KR7 RALGPS1-206ENST00000394011 819 ntTSL 1 (best) BASIC26.29■■□□□ 1.8
PHACTR3Q96KR7 GLYCTK-205ENST00000473032 935 ntTSL 1 (best) BASIC26.29■■□□□ 1.8
PHACTR3Q96KR7 OPA3-203ENST00000544371 1146 ntTSL 2 BASIC26.29■■□□□ 1.8
PHACTR3Q96KR7 FXYD1-204ENST00000588081 645 ntAPPRIS P1 TSL 1 (best) BASIC26.29■■□□□ 1.8
PHACTR3Q96KR7 AC013268.1-201ENST00000639717 1208 ntTSL 5 BASIC26.29■■□□□ 1.8
PHACTR3Q96KR7 NTN5-201ENST00000270235 1836 ntAPPRIS P1 TSL 1 (best) BASIC26.29■■□□□ 1.8
PHACTR3Q96KR7 STAU2-229ENST00000524300 3065 ntAPPRIS P4 TSL 2 BASIC26.29■■□□□ 1.8
PHACTR3Q96KR7 B4GALNT1-208ENST00000550764 1967 ntTSL 1 (best) BASIC26.29■■□□□ 1.8
PHACTR3Q96KR7 SCLY-201ENST00000254663 2562 ntAPPRIS P1 TSL 1 (best) BASIC26.29■■□□□ 1.8
PHACTR3Q96KR7 AC092667.1-201ENST00000434301 2586 ntBASIC26.29■■□□□ 1.8
PHACTR3Q96KR7 DCK-201ENST00000286648 2716 ntAPPRIS P1 TSL 1 (best) BASIC26.29■■□□□ 1.8
PHACTR3Q96KR7 DISC1-212ENST00000535983 2505 ntAPPRIS ALT2 TSL 1 (best) BASIC26.28■■□□□ 1.8
Retrieved 100 of 98,524 protein–RNA pairs in 44.3 ms