Protein–RNA interactions for Protein: Q96JC1

VPS39, Vam6/Vps39-like protein, humanhuman

Predictions only

Length 886 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS39Q96JC1 TOR1A-201ENST00000351698 2076 ntAPPRIS P1 TSL 1 (best) BASIC20.06■□□□□ 0.8
VPS39Q96JC1 RNF135-205ENST00000535306 2098 ntTSL 1 (best) BASIC20.06■□□□□ 0.8
VPS39Q96JC1 ANKRD65-204ENST00000520296 1632 ntTSL 1 (best) BASIC20.05■□□□□ 0.8
VPS39Q96JC1 UTP4-201ENST00000314423 2322 ntAPPRIS P1 TSL 1 (best) BASIC20.05■□□□□ 0.8
VPS39Q96JC1 TAPT1-201ENST00000405303 4591 ntAPPRIS P1 TSL 1 (best) BASIC20.05■□□□□ 0.8
VPS39Q96JC1 C2orf54-201ENST00000307486 2017 ntAPPRIS ALT2 TSL 1 (best) BASIC20.05■□□□□ 0.8
VPS39Q96JC1 BTBD9-205ENST00000419706 2034 ntTSL 1 (best) BASIC20.05■□□□□ 0.8
VPS39Q96JC1 NSMF-203ENST00000371472 1852 ntAPPRIS P3 TSL 2 BASIC20.05■□□□□ 0.8
VPS39Q96JC1 MRM1-204ENST00000614766 1857 ntAPPRIS P1 TSL 1 (best) BASIC20.05■□□□□ 0.8
VPS39Q96JC1 QKI-203ENST00000361752 9463 ntAPPRIS P1 TSL 1 (best) BASIC20.05■□□□□ 0.8
VPS39Q96JC1 PCID2-203ENST00000375457 2372 ntTSL 1 (best) BASIC20.05■□□□□ 0.8
VPS39Q96JC1 NFKBIB-201ENST00000313582 1159 ntAPPRIS P1 TSL 1 (best) BASIC20.05■□□□□ 0.8
VPS39Q96JC1 GUK1-207ENST00000366726 873 ntAPPRIS P3 TSL 3 BASIC20.05■□□□□ 0.8
VPS39Q96JC1 SPI1-203ENST00000533030 661 ntTSL 2 BASIC20.05■□□□□ 0.8
VPS39Q96JC1 AC092368.3-201ENST00000562549 1107 ntTSL 5 BASIC20.05■□□□□ 0.8
VPS39Q96JC1 CD99-212ENST00000624481 1089 ntAPPRIS ALT2 TSL 2 BASIC20.05■□□□□ 0.8
VPS39Q96JC1 AL133516.1-201ENST00000633012 540 ntTSL 5 BASIC20.05■□□□□ 0.8
VPS39Q96JC1 TPD52-209ENST00000518937 2856 ntTSL 2 BASIC20.05■□□□□ 0.8
VPS39Q96JC1 ARHGAP22-204ENST00000417247 2340 ntTSL 2 BASIC20.05■□□□□ 0.8
VPS39Q96JC1 STK25-205ENST00000405883 1904 ntTSL 2 BASIC20.05■□□□□ 0.8
VPS39Q96JC1 LENG9-203ENST00000611161 1916 ntAPPRIS P1 BASIC20.05■□□□□ 0.8
VPS39Q96JC1 MORN1-202ENST00000378529 1500 ntAPPRIS ALT2 TSL 1 (best) BASIC20.05■□□□□ 0.8
VPS39Q96JC1 ACTR5-201ENST00000243903 2565 ntAPPRIS P1 TSL 1 (best) BASIC20.05■□□□□ 0.8
VPS39Q96JC1 RHOA-202ENST00000418115 2031 ntAPPRIS P1 TSL 1 (best) BASIC20.05■□□□□ 0.8
VPS39Q96JC1 ACBD4-204ENST00000431281 2026 ntTSL 5 BASIC20.05■□□□□ 0.8
VPS39Q96JC1 IL17RC-202ENST00000383812 2384 ntAPPRIS ALT2 TSL 1 (best) BASIC20.05■□□□□ 0.8
VPS39Q96JC1 ARNTL2-204ENST00000395901 1954 ntAPPRIS ALT2 TSL 1 (best) BASIC20.04■□□□□ 0.8
VPS39Q96JC1 TGIF1-207ENST00000407501 1585 ntAPPRIS P1 TSL 3 BASIC20.04■□□□□ 0.8
VPS39Q96JC1 EOMES-202ENST00000449599 2829 ntTSL 1 (best) BASIC20.04■□□□□ 0.8
VPS39Q96JC1 TNFSF11-203ENST00000398795 2199 ntAPPRIS P1 TSL 1 (best) BASIC20.04■□□□□ 0.8
VPS39Q96JC1 MBD3-201ENST00000156825 5518 ntTSL 1 (best) BASIC20.04■□□□□ 0.8
VPS39Q96JC1 ST3GAL3-239ENST00000545417 1667 ntTSL 5 BASIC20.04■□□□□ 0.8
VPS39Q96JC1 DCBLD2-201ENST00000326840 6122 ntAPPRIS P1 TSL 1 (best) BASIC20.04■□□□□ 0.8
VPS39Q96JC1 GGTLC1-202ENST00000286890 1028 ntAPPRIS P1 TSL 1 (best) BASIC20.04■□□□□ 0.8
VPS39Q96JC1 LINC01659-202ENST00000449711 917 ntTSL 3 BASIC20.04■□□□□ 0.8
VPS39Q96JC1 GPR50-AS1-201ENST00000454196 1620 ntTSL 2 BASIC20.04■□□□□ 0.8
VPS39Q96JC1 LONRF3-202ENST00000371628 2550 ntAPPRIS P1 TSL 1 (best) BASIC20.04■□□□□ 0.8
VPS39Q96JC1 SET-201ENST00000322030 2915 ntAPPRIS P1 TSL 1 (best) BASIC20.04■□□□□ 0.8
VPS39Q96JC1 ATRN-201ENST00000262919 8633 ntAPPRIS P4 TSL 5 BASIC20.04■□□□□ 0.8
VPS39Q96JC1 RIMBP3C-201ENST00000331505 5475 ntAPPRIS ALT2 BASIC20.04■□□□□ 0.8
VPS39Q96JC1 GOLGA3-203ENST00000456883 5496 ntAPPRIS ALT2 TSL 1 (best) BASIC20.04■□□□□ 0.8
VPS39Q96JC1 BEST4-201ENST00000372207 2047 ntAPPRIS P1 TSL 1 (best) BASIC20.03■□□□□ 0.8
VPS39Q96JC1 ASMTL-206ENST00000534940 2048 ntTSL 2 BASIC20.03■□□□□ 0.8
VPS39Q96JC1 PAX1-205ENST00000613128 5352 ntAPPRIS ALT2 TSL 1 (best) BASIC20.03■□□□□ 0.8
VPS39Q96JC1 ZNF331-214ENST00000511154 2120 ntAPPRIS P1 TSL 1 (best) BASIC20.03■□□□□ 0.8
VPS39Q96JC1 C3orf33-201ENST00000340171 1884 ntTSL 1 (best) BASIC20.03■□□□□ 0.8
VPS39Q96JC1 PITX2-201ENST00000306732 2320 ntAPPRIS P4 TSL 1 (best) BASIC20.03■□□□□ 0.8
VPS39Q96JC1 ZNF534-201ENST00000301085 1525 ntTSL 2 BASIC20.03■□□□□ 0.8
VPS39Q96JC1 CDCA4-202ENST00000392590 1536 ntAPPRIS P1 TSL 1 (best) BASIC20.03■□□□□ 0.8
VPS39Q96JC1 CCDC63-201ENST00000308208 1993 ntAPPRIS P3 TSL 2 BASIC20.03■□□□□ 0.8
VPS39Q96JC1 STARD10-201ENST00000334805 1963 ntAPPRIS P1 TSL 1 (best) BASIC20.03■□□□□ 0.8
VPS39Q96JC1 ZNF579-201ENST00000325421 2899 ntAPPRIS P1 TSL 2 BASIC20.03■□□□□ 0.8
VPS39Q96JC1 SPAST-203ENST00000615843 5212 ntAPPRIS P4 TSL 1 (best) BASIC20.03■□□□□ 0.8
VPS39Q96JC1 TM4SF5-201ENST00000270560 708 ntAPPRIS P1 TSL 1 (best) BASIC20.03■□□□□ 0.8
VPS39Q96JC1 GXYLT1P2-201ENST00000433312 1230 ntBASIC20.03■□□□□ 0.8
VPS39Q96JC1 ATE1-AS1-201ENST00000437593 951 ntTSL 2 BASIC20.03■□□□□ 0.8
VPS39Q96JC1 ELAVL3-202ENST00000438662 1223 ntAPPRIS ALT1 TSL 5 BASIC20.03■□□□□ 0.8
VPS39Q96JC1 COX4I1-216ENST00000568794 794 ntTSL 5 BASIC20.03■□□□□ 0.8
VPS39Q96JC1 AC005697.1-201ENST00000582441 582 ntAPPRIS P1 TSL 4 BASIC20.03■□□□□ 0.8
VPS39Q96JC1 AC007773.1-201ENST00000592680 972 ntTSL 2 BASIC20.03■□□□□ 0.8
VPS39Q96JC1 SLC35A2-212ENST00000634665 486 ntTSL 4 BASIC20.03■□□□□ 0.8
VPS39Q96JC1 NFATC2IP-201ENST00000320805 4569 ntAPPRIS P1 TSL 1 (best) BASIC20.03■□□□□ 0.8
VPS39Q96JC1 TUBA4A-202ENST00000392088 2499 ntTSL 2 BASIC20.03■□□□□ 0.8
VPS39Q96JC1 RTKN-201ENST00000233330 2220 ntTSL 1 (best) BASIC20.03■□□□□ 0.8
VPS39Q96JC1 GPR35-201ENST00000319838 2249 ntAPPRIS P3 TSL 2 BASIC20.03■□□□□ 0.8
VPS39Q96JC1 C16orf70-201ENST00000219139 2865 ntAPPRIS P1 TSL 1 (best) BASIC20.03■□□□□ 0.8
VPS39Q96JC1 NKX2-1-202ENST00000498187 2338 ntAPPRIS P1 TSL 1 (best) BASIC20.03■□□□□ 0.8
VPS39Q96JC1 GALNT10-201ENST00000297107 5961 ntAPPRIS P1 TSL 1 (best) BASIC20.03■□□□□ 0.8
VPS39Q96JC1 BST1-202ENST00000382346 1993 ntAPPRIS ALT2 TSL 5 BASIC20.03■□□□□ 0.8
VPS39Q96JC1 AC007192.1-201ENST00000593731 5142 ntAPPRIS P1 TSL 2 BASIC20.02■□□□□ 0.8
VPS39Q96JC1 AC009041.2-204ENST00000568394 3343 ntTSL 1 (best) BASIC20.02■□□□□ 0.8
VPS39Q96JC1 AL158211.5-201ENST00000623583 2518 ntBASIC20.02■□□□□ 0.8
VPS39Q96JC1 SPI1-201ENST00000227163 1168 ntAPPRIS ALT1 TSL 2 BASIC20.02■□□□□ 0.8
VPS39Q96JC1 PRSS3-202ENST00000361005 966 ntTSL 1 (best) BASIC20.02■□□□□ 0.8
VPS39Q96JC1 CD58-201ENST00000369487 892 ntAPPRIS ALT2 TSL 1 (best) BASIC20.02■□□□□ 0.8
VPS39Q96JC1 CD58-202ENST00000369489 1098 ntAPPRIS P3 TSL 1 (best) BASIC20.02■□□□□ 0.8
VPS39Q96JC1 PLLP-204ENST00000569059 665 ntTSL 3 BASIC20.02■□□□□ 0.8
VPS39Q96JC1 FAM222B-208ENST00000581381 556 ntTSL 4 BASIC20.02■□□□□ 0.8
VPS39Q96JC1 MFSD11-216ENST00000590393 1141 ntBASIC20.02■□□□□ 0.8
VPS39Q96JC1 SAC3D1-205ENST00000531072 1362 ntAPPRIS P1 TSL 2 BASIC20.02■□□□□ 0.8
VPS39Q96JC1 MAZ-214ENST00000568544 1464 ntTSL 2 BASIC20.02■□□□□ 0.8
VPS39Q96JC1 GLT8D1-213ENST00000491606 1577 ntAPPRIS P1 TSL 5 BASIC20.02■□□□□ 0.8
VPS39Q96JC1 PFKFB3-202ENST00000360521 1964 ntAPPRIS P2 TSL 5 BASIC20.02■□□□□ 0.8
VPS39Q96JC1 GABRD-201ENST00000378585 1961 ntAPPRIS P2 TSL 1 (best) BASIC20.02■□□□□ 0.8
VPS39Q96JC1 SOCS2-201ENST00000340600 2761 ntAPPRIS P1 TSL 1 (best) BASIC20.02■□□□□ 0.8
VPS39Q96JC1 BACE2-201ENST00000328735 2824 ntTSL 1 (best) BASIC20.02■□□□□ 0.79
VPS39Q96JC1 FGF14-IT1-202ENST00000607251 2123 ntTSL 2 BASIC20.02■□□□□ 0.79
VPS39Q96JC1 TMEM179-206ENST00000616017 1645 ntBASIC20.02■□□□□ 0.79
VPS39Q96JC1 WISP2-202ENST00000372865 1518 ntTSL 1 (best) BASIC20.02■□□□□ 0.79
VPS39Q96JC1 KIAA1324L-208ENST00000450689 6841 ntAPPRIS ALT2 TSL 5 BASIC20.01■□□□□ 0.79
VPS39Q96JC1 PAQR4-203ENST00000572687 2251 ntTSL 2 BASIC20.01■□□□□ 0.79
VPS39Q96JC1 SLC12A4-202ENST00000422611 4670 ntTSL 2 BASIC20.01■□□□□ 0.79
VPS39Q96JC1 PCDHB11-202ENST00000624887 1973 ntTSL 2 BASIC20.01■□□□□ 0.79
VPS39Q96JC1 ZNF12-201ENST00000342651 2921 ntAPPRIS ALT2 TSL 2 BASIC20.01■□□□□ 0.79
VPS39Q96JC1 CERKL-201ENST00000339098 1677 ntAPPRIS P3 TSL 1 (best) BASIC20.01■□□□□ 0.79
VPS39Q96JC1 CD37-204ENST00000535669 1674 ntTSL 2 BASIC20.01■□□□□ 0.79
VPS39Q96JC1 ADGRG2-210ENST00000379878 4803 ntTSL 1 (best) BASIC20.01■□□□□ 0.79
VPS39Q96JC1 ADRM1-201ENST00000253003 1478 ntAPPRIS P1 TSL 1 (best) BASIC20.01■□□□□ 0.79
VPS39Q96JC1 MAST1-208ENST00000591495 1496 ntTSL 5 BASIC20.01■□□□□ 0.79
VPS39Q96JC1 HSCB-202ENST00000398941 955 ntTSL 2 BASIC20.01■□□□□ 0.79
Retrieved 100 of 98,524 protein–RNA pairs in 19.4 ms