Protein–RNA interactions for Protein: Q96AY4

TTC28, Tetratricopeptide repeat protein 28, humanhuman

Predictions only

Length 2,481 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TTC28Q96AY4 CA9-201ENST00000378357 1618 ntAPPRIS P1 TSL 1 (best) BASIC20.55■□□□□ 0.88
TTC28Q96AY4 BCL2L12-212ENST00000616144 1854 ntAPPRIS P3 TSL 1 (best) BASIC20.55■□□□□ 0.88
TTC28Q96AY4 SRMS-201ENST00000217188 1516 ntAPPRIS P1 TSL 1 (best) BASIC20.54■□□□□ 0.88
TTC28Q96AY4 GUCA2B-201ENST00000372581 597 ntAPPRIS P1 TSL 1 (best) BASIC20.54■□□□□ 0.88
TTC28Q96AY4 AC120114.3-201ENST00000611923 658 ntBASIC20.54■□□□□ 0.88
TTC28Q96AY4 AC010653.2-201ENST00000623505 997 ntBASIC20.54■□□□□ 0.88
TTC28Q96AY4 MCTP2-205ENST00000543482 1422 ntTSL 2 BASIC20.54■□□□□ 0.88
TTC28Q96AY4 TMEM9B-205ENST00000534025 2083 ntAPPRIS P1 TSL 1 (best) BASIC20.54■□□□□ 0.88
TTC28Q96AY4 CBWD6-213ENST00000613716 1820 ntTSL 1 (best) BASIC20.54■□□□□ 0.88
TTC28Q96AY4 B3GALNT2-202ENST00000366600 2015 ntAPPRIS P1 TSL 1 (best) BASIC20.54■□□□□ 0.88
TTC28Q96AY4 SCRN1-203ENST00000409570 535 ntTSL 4 BASIC20.54■□□□□ 0.88
TTC28Q96AY4 MCEMP1-201ENST00000333598 1730 ntAPPRIS P2 TSL 1 (best) BASIC20.54■□□□□ 0.88
TTC28Q96AY4 MED17-227ENST00000640521 2047 ntTSL 5 BASIC20.54■□□□□ 0.88
TTC28Q96AY4 ETFA-202ENST00000433983 1346 ntTSL 2 BASIC20.54■□□□□ 0.88
TTC28Q96AY4 CELF6-205ENST00000567083 1496 ntAPPRIS ALT2 TSL 2 BASIC20.54■□□□□ 0.88
TTC28Q96AY4 CNOT9-209ENST00000627282 1621 ntTSL 2 BASIC20.54■□□□□ 0.88
TTC28Q96AY4 CFAP99-206ENST00000616117 1941 ntAPPRIS P1 TSL 5 BASIC20.54■□□□□ 0.88
TTC28Q96AY4 SH3BP2-204ENST00000452765 2265 ntAPPRIS P3 TSL 1 (best) BASIC20.54■□□□□ 0.88
TTC28Q96AY4 RNF38-205ENST00000377877 1974 ntTSL 2 BASIC20.54■□□□□ 0.88
TTC28Q96AY4 NTMT1-210ENST00000613644 1501 ntAPPRIS P1 TSL 3 BASIC20.54■□□□□ 0.88
TTC28Q96AY4 AC087742.1-201ENST00000575880 1738 ntBASIC20.53■□□□□ 0.88
TTC28Q96AY4 DACT3-202ENST00000391916 2834 ntAPPRIS P1 TSL 5 BASIC20.53■□□□□ 0.88
TTC28Q96AY4 FAM107B-205ENST00000378467 2374 ntAPPRIS P1 TSL 1 (best) BASIC20.53■□□□□ 0.88
TTC28Q96AY4 C2orf82-202ENST00000409230 663 ntAPPRIS P2 TSL 3 BASIC20.53■□□□□ 0.88
TTC28Q96AY4 KCTD7-202ENST00000443322 1160 ntAPPRIS ALT1 TSL 1 (best) BASIC20.53■□□□□ 0.88
TTC28Q96AY4 LINC01786-202ENST00000453732 389 ntTSL 2 BASIC20.53■□□□□ 0.88
TTC28Q96AY4 NAT6-201ENST00000354862 1330 ntAPPRIS P3 TSL 1 (best) BASIC20.53■□□□□ 0.88
TTC28Q96AY4 PODNL1-203ENST00000538371 1826 ntAPPRIS ALT2 TSL 2 BASIC20.53■□□□□ 0.88
TTC28Q96AY4 CDC42SE2-206ENST00000503291 2025 ntTSL 1 (best) BASIC20.53■□□□□ 0.88
TTC28Q96AY4 MOK-226ENST00000522874 1890 ntAPPRIS ALT2 TSL 5 BASIC20.53■□□□□ 0.88
TTC28Q96AY4 AC096733.2-201ENST00000609937 1394 ntBASIC20.53■□□□□ 0.88
TTC28Q96AY4 PRSS42-201ENST00000429665 882 ntAPPRIS P1 TSL 1 (best) BASIC20.53■□□□□ 0.88
TTC28Q96AY4 SLC25A1P2-201ENST00000430693 912 ntBASIC20.53■□□□□ 0.88
TTC28Q96AY4 SELENOH-204ENST00000534355 818 ntAPPRIS P2 TSL 1 (best) BASIC20.53■□□□□ 0.88
TTC28Q96AY4 AL031008.1-201ENST00000619963 541 ntBASIC20.53■□□□□ 0.88
TTC28Q96AY4 RIMKLB-205ENST00000535829 2236 ntAPPRIS P1 TSL 2 BASIC20.53■□□□□ 0.88
TTC28Q96AY4 GAS8-202ENST00000536122 1687 ntTSL 2 BASIC20.53■□□□□ 0.88
TTC28Q96AY4 AL357033.1-201ENST00000370520 1933 ntTSL 2 BASIC20.53■□□□□ 0.88
TTC28Q96AY4 IFNLR1-202ENST00000327575 1476 ntAPPRIS ALT2 TSL 1 (best) BASIC20.52■□□□□ 0.88
TTC28Q96AY4 KRT18P38-201ENST00000449496 1282 ntBASIC20.52■□□□□ 0.88
TTC28Q96AY4 BORCS8-206ENST00000585679 801 ntTSL 3 BASIC20.52■□□□□ 0.88
TTC28Q96AY4 RBPMS-203ENST00000339877 1341 ntAPPRIS ALT1 TSL 1 (best) BASIC20.52■□□□□ 0.88
TTC28Q96AY4 SMOX-202ENST00000305958 2233 ntAPPRIS P1 TSL 1 (best) BASIC20.52■□□□□ 0.88
TTC28Q96AY4 PXYLP1-203ENST00000502783 2066 ntTSL 2 BASIC20.52■□□□□ 0.88
TTC28Q96AY4 SH2D5-202ENST00000444387 1934 ntAPPRIS P1 TSL 2 BASIC20.52■□□□□ 0.88
TTC28Q96AY4 PFN1-201ENST00000225655 1291 ntAPPRIS P1 TSL 1 (best) BASIC20.52■□□□□ 0.88
TTC28Q96AY4 AC004882.1-201ENST00000416352 590 ntTSL 3 BASIC20.52■□□□□ 0.88
TTC28Q96AY4 AC064807.1-202ENST00000423716 936 ntTSL 2 BASIC20.52■□□□□ 0.88
TTC28Q96AY4 PPP1R3F-203ENST00000466508 1885 ntTSL 2 BASIC20.52■□□□□ 0.88
TTC28Q96AY4 KCNQ4-204ENST00000509682 1926 ntAPPRIS ALT2 TSL 5 BASIC20.52■□□□□ 0.87
TTC28Q96AY4 DES-201ENST00000373960 2248 ntAPPRIS P1 TSL 1 (best) BASIC20.52■□□□□ 0.87
TTC28Q96AY4 COX7A1-201ENST00000292907 762 ntAPPRIS P1 TSL 1 (best) BASIC20.51■□□□□ 0.87
TTC28Q96AY4 CHCHD1-201ENST00000372833 835 ntAPPRIS P1 TSL 1 (best) BASIC20.51■□□□□ 0.87
TTC28Q96AY4 GRM5-203ENST00000393294 1268 ntTSL 1 (best) BASIC20.51■□□□□ 0.87
TTC28Q96AY4 CRELD2-204ENST00000407217 1230 ntAPPRIS ALT2 TSL 1 (best) BASIC20.51■□□□□ 0.87
TTC28Q96AY4 RFX3-AS1-201ENST00000423112 552 ntTSL 3 BASIC20.51■□□□□ 0.87
TTC28Q96AY4 RNF144A-AS1-204ENST00000437589 618 ntTSL 2 BASIC20.51■□□□□ 0.87
TTC28Q96AY4 AC002467.1-201ENST00000457510 657 ntTSL 3 BASIC20.51■□□□□ 0.87
TTC28Q96AY4 RPL19-204ENST00000579260 1051 ntAPPRIS ALT1 TSL 2 BASIC20.51■□□□□ 0.87
TTC28Q96AY4 SLC35A2-217ENST00000635589 1424 ntTSL 2 BASIC20.51■□□□□ 0.87
TTC28Q96AY4 MRPL38-201ENST00000309352 1888 ntAPPRIS P1 TSL 1 (best) BASIC20.51■□□□□ 0.87
TTC28Q96AY4 CCDC151-202ENST00000586836 1867 ntTSL 2 BASIC20.51■□□□□ 0.87
TTC28Q96AY4 NT5C1A-201ENST00000235628 1107 ntAPPRIS P1 TSL 1 (best) BASIC20.51■□□□□ 0.87
TTC28Q96AY4 HINT1-201ENST00000304043 1081 ntAPPRIS P1 TSL 1 (best) BASIC20.51■□□□□ 0.87
TTC28Q96AY4 MSRB1-202ENST00000399753 847 ntTSL 3 BASIC20.51■□□□□ 0.87
TTC28Q96AY4 MOBP-208ENST00000441980 830 ntAPPRIS P4 TSL 4 BASIC20.51■□□□□ 0.87
TTC28Q96AY4 AC104758.1-202ENST00000568184 602 ntTSL 3 BASIC20.51■□□□□ 0.87
TTC28Q96AY4 AL512604.3-201ENST00000569583 964 ntBASIC20.51■□□□□ 0.87
TTC28Q96AY4 BIN1-209ENST00000393040 2293 ntAPPRIS ALT2 TSL 1 (best) BASIC20.51■□□□□ 0.87
TTC28Q96AY4 TSSK6-201ENST00000585580 1467 ntAPPRIS P1 BASIC20.51■□□□□ 0.87
TTC28Q96AY4 NDUFB9-202ENST00000517367 636 ntTSL 3 BASIC20.5■□□□□ 0.87
TTC28Q96AY4 PENK-208ENST00000523051 772 ntTSL 5 BASIC20.5■□□□□ 0.87
TTC28Q96AY4 AC092865.5-201ENST00000545435 363 ntBASIC20.5■□□□□ 0.87
TTC28Q96AY4 CALM3-211ENST00000598871 561 ntTSL 4 BASIC20.5■□□□□ 0.87
TTC28Q96AY4 METTL5-207ENST00000410097 1370 ntTSL 2 BASIC20.5■□□□□ 0.87
TTC28Q96AY4 RSRC1-211ENST00000480820 1410 ntAPPRIS P1 TSL 5 BASIC20.5■□□□□ 0.87
TTC28Q96AY4 SLC25A39-202ENST00000377095 1565 ntAPPRIS ALT1 TSL 1 (best) BASIC20.5■□□□□ 0.87
TTC28Q96AY4 FGF19-201ENST00000294312 2447 ntAPPRIS P1 TSL 1 (best) BASIC20.5■□□□□ 0.87
TTC28Q96AY4 KPTN-201ENST00000338134 1691 ntAPPRIS P1 TSL 1 (best) BASIC20.5■□□□□ 0.87
TTC28Q96AY4 ADRA1A-203ENST00000380572 1697 ntTSL 1 (best) BASIC20.5■□□□□ 0.87
TTC28Q96AY4 HSD11B1L-218ENST00000581773 1687 ntAPPRIS P3 TSL 1 (best) BASIC20.5■□□□□ 0.87
TTC28Q96AY4 MVD-201ENST00000301012 1823 ntAPPRIS P1 TSL 1 (best) BASIC20.5■□□□□ 0.87
TTC28Q96AY4 PLEKHO1-201ENST00000369124 2050 ntAPPRIS P1 TSL 1 (best) BASIC20.5■□□□□ 0.87
TTC28Q96AY4 GCLC-209ENST00000514004 2356 ntTSL 1 (best) BASIC20.5■□□□□ 0.87
TTC28Q96AY4 FJX1-201ENST00000317811 2450 ntAPPRIS P1 BASIC20.5■□□□□ 0.87
TTC28Q96AY4 GNGT2-201ENST00000300406 889 ntAPPRIS P1 TSL 1 (best) BASIC20.5■□□□□ 0.87
TTC28Q96AY4 COMTD1-201ENST00000372538 976 ntAPPRIS P1 TSL 1 (best) BASIC20.5■□□□□ 0.87
TTC28Q96AY4 HLA-A-201ENST00000376802 1334 ntBASIC20.5■□□□□ 0.87
TTC28Q96AY4 PAIP1-203ENST00000436644 1734 ntAPPRIS ALT1 TSL 1 (best) BASIC20.5■□□□□ 0.87
TTC28Q96AY4 NECTIN2-202ENST00000252485 2112 ntAPPRIS P3 TSL 1 (best) BASIC20.5■□□□□ 0.87
TTC28Q96AY4 SRPK3-202ENST00000370101 1958 ntAPPRIS P3 TSL 1 (best) BASIC20.49■□□□□ 0.87
TTC28Q96AY4 PARK7-203ENST00000377491 977 ntAPPRIS P1 TSL 3 BASIC20.49■□□□□ 0.87
TTC28Q96AY4 STK25-205ENST00000405883 1904 ntTSL 2 BASIC20.49■□□□□ 0.87
TTC28Q96AY4 BECN2-201ENST00000419583 1296 ntAPPRIS P1 BASIC20.49■□□□□ 0.87
TTC28Q96AY4 PQLC2L-205ENST00000461040 563 ntAPPRIS ALT2 TSL 3 BASIC20.49■□□□□ 0.87
TTC28Q96AY4 AF228730.7-201ENST00000641842 219 ntBASIC20.49■□□□□ 0.87
TTC28Q96AY4 LGALS9B-202ENST00000423676 1713 ntAPPRIS ALT2 TSL 1 (best) BASIC20.49■□□□□ 0.87
TTC28Q96AY4 AC092068.2-201ENST00000590491 1708 ntBASIC20.49■□□□□ 0.87
TTC28Q96AY4 MIR574-201ENST00000385209 96 ntBASIC20.49■□□□□ 0.87
TTC28Q96AY4 ATP5J-203ENST00000400090 647 ntAPPRIS P1 TSL 2 BASIC20.49■□□□□ 0.87
Retrieved 100 of 98,524 protein–RNA pairs in 36.9 ms