Protein–RNA interactions for Protein: Q8NDQ6

ZNF540, Zinc finger protein 540, humanhuman

Predictions only

Length 660 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
ZNF540Q8NDQ6 ZNF385B-204ENST00000410066 3288 ntAPPRIS P1 TSL 1 (best) BASIC18.48■□□□□ 0.55
ZNF540Q8NDQ6 TP53BP2-202ENST00000391878 4741 ntTSL 1 (best) BASIC18.48■□□□□ 0.55
ZNF540Q8NDQ6 CARMIL2-201ENST00000334583 4687 ntAPPRIS P3 TSL 1 (best) BASIC18.48■□□□□ 0.55
ZNF540Q8NDQ6 AC020763.4-201ENST00000623414 4170 ntBASIC18.48■□□□□ 0.55
ZNF540Q8NDQ6 PXK-203ENST00000383715 1756 ntTSL 5 BASIC18.48■□□□□ 0.55
ZNF540Q8NDQ6 IQSEC1-201ENST00000273221 5279 ntAPPRIS P1 TSL 1 (best) BASIC18.48■□□□□ 0.55
ZNF540Q8NDQ6 BCL2L12-201ENST00000246784 990 ntAPPRIS ALT2 TSL 1 (best) BASIC18.48■□□□□ 0.55
ZNF540Q8NDQ6 HACD1-201ENST00000326961 773 ntTSL 2 BASIC18.48■□□□□ 0.55
ZNF540Q8NDQ6 GADD45G-202ENST00000375769 977 ntTSL 2 BASIC18.48■□□□□ 0.55
ZNF540Q8NDQ6 NT5C3AP1-201ENST00000394500 1012 ntBASIC18.48■□□□□ 0.55
ZNF540Q8NDQ6 LRRC75A-AS1-202ENST00000470491 1057 ntTSL 1 (best) BASIC18.48■□□□□ 0.55
ZNF540Q8NDQ6 ATOX1-207ENST00000524142 749 ntAPPRIS P1 TSL 5 BASIC18.48■□□□□ 0.55
ZNF540Q8NDQ6 AC061979.1-201ENST00000532061 434 ntTSL 5 BASIC18.48■□□□□ 0.55
ZNF540Q8NDQ6 AC007114.1-201ENST00000576871 713 ntTSL 2 BASIC18.48■□□□□ 0.55
ZNF540Q8NDQ6 AP2S1-203ENST00000593442 636 ntTSL 2 BASIC18.48■□□□□ 0.55
ZNF540Q8NDQ6 TNFRSF8-202ENST00000413146 2363 ntTSL 1 (best) BASIC18.48■□□□□ 0.55
ZNF540Q8NDQ6 CDH22-201ENST00000372262 3661 ntAPPRIS P1 TSL 1 (best) BASIC18.48■□□□□ 0.55
ZNF540Q8NDQ6 LPCAT3-201ENST00000261407 2268 ntAPPRIS P1 TSL 1 (best) BASIC18.48■□□□□ 0.55
ZNF540Q8NDQ6 LTBP1-203ENST00000404816 6333 ntAPPRIS P4 TSL 5 BASIC18.48■□□□□ 0.55
ZNF540Q8NDQ6 SLC3A2-206ENST00000535296 2084 ntTSL 5 BASIC18.48■□□□□ 0.55
ZNF540Q8NDQ6 CDH24-205ENST00000554034 2759 ntAPPRIS P1 TSL 1 (best) BASIC18.47■□□□□ 0.55
ZNF540Q8NDQ6 KAT5-203ENST00000377046 2237 ntAPPRIS P1 TSL 1 (best) BASIC18.47■□□□□ 0.55
ZNF540Q8NDQ6 COQ10A-201ENST00000308197 1652 ntAPPRIS P3 TSL 1 (best) BASIC18.47■□□□□ 0.55
ZNF540Q8NDQ6 ATG4B-204ENST00000402096 1685 ntTSL 2 BASIC18.47■□□□□ 0.55
ZNF540Q8NDQ6 ITGB5-201ENST00000296181 4372 ntAPPRIS P1 TSL 1 (best) BASIC18.47■□□□□ 0.55
ZNF540Q8NDQ6 ZNF419-203ENST00000354197 1569 ntTSL 5 BASIC18.47■□□□□ 0.55
ZNF540Q8NDQ6 PRKAR1B-212ENST00000544935 2494 ntAPPRIS P1 TSL 5 BASIC18.47■□□□□ 0.55
ZNF540Q8NDQ6 PTOV1-212ENST00000599732 1577 ntAPPRIS P1 TSL 1 (best) BASIC18.47■□□□□ 0.55
ZNF540Q8NDQ6 CPQ-201ENST00000220763 1947 ntAPPRIS P1 TSL 1 (best) BASIC18.47■□□□□ 0.55
ZNF540Q8NDQ6 THAP7-AS1-203ENST00000452284 2298 ntTSL 2 BASIC18.47■□□□□ 0.55
ZNF540Q8NDQ6 ZNF839-202ENST00000442396 2987 ntAPPRIS P3 TSL 5 BASIC18.47■□□□□ 0.55
ZNF540Q8NDQ6 KLHDC10-201ENST00000335420 6437 ntAPPRIS P1 TSL 1 (best) BASIC18.47■□□□□ 0.55
ZNF540Q8NDQ6 AC005906.2-203ENST00000640962 2091 ntTSL 5 BASIC18.47■□□□□ 0.55
ZNF540Q8NDQ6 PCSK1N-201ENST00000218230 1050 ntAPPRIS P1 TSL 1 (best) BASIC18.47■□□□□ 0.55
ZNF540Q8NDQ6 PRKCZ-AS1-201ENST00000333854 1253 ntTSL 2 BASIC18.47■□□□□ 0.55
ZNF540Q8NDQ6 FAM219A-205ENST00000379084 893 ntTSL 5 BASIC18.47■□□□□ 0.55
ZNF540Q8NDQ6 ASMT-202ENST00000381233 989 ntTSL 1 (best) BASIC18.47■□□□□ 0.55
ZNF540Q8NDQ6 RNF208-202ENST00000392827 1135 ntAPPRIS P1 TSL 5 BASIC18.47■□□□□ 0.55
ZNF540Q8NDQ6 PYCR3-203ENST00000433751 1000 ntAPPRIS ALT2 TSL 2 BASIC18.47■□□□□ 0.55
ZNF540Q8NDQ6 ANKRD63-201ENST00000434396 1143 ntAPPRIS P1 BASIC18.47■□□□□ 0.55
ZNF540Q8NDQ6 ZNF302-209ENST00000507959 854 ntTSL 2 BASIC18.47■□□□□ 0.55
ZNF540Q8NDQ6 KRT18P14-201ENST00000534205 1250 ntBASIC18.47■□□□□ 0.55
ZNF540Q8NDQ6 AL390816.2-201ENST00000554252 737 ntTSL 3 BASIC18.47■□□□□ 0.55
ZNF540Q8NDQ6 CCDC92B-201ENST00000575506 885 ntBASIC18.47■□□□□ 0.55
ZNF540Q8NDQ6 CIRBP-222ENST00000589235 1073 ntAPPRIS ALT1 TSL 2 BASIC18.47■□□□□ 0.55
ZNF540Q8NDQ6 STARD3-219ENST00000580611 1989 ntTSL 5 BASIC18.47■□□□□ 0.55
ZNF540Q8NDQ6 CDHR5-201ENST00000349570 2318 ntAPPRIS ALT2 TSL 1 (best) BASIC18.47■□□□□ 0.55
ZNF540Q8NDQ6 SEPT8-216ENST00000620483 4335 ntTSL 5 BASIC18.47■□□□□ 0.55
ZNF540Q8NDQ6 HOXC6-202ENST00000394331 2943 ntTSL 1 (best) BASIC18.47■□□□□ 0.55
ZNF540Q8NDQ6 UVSSA-207ENST00000511216 2927 ntAPPRIS P2 TSL 1 (best) BASIC18.47■□□□□ 0.55
ZNF540Q8NDQ6 SLC38A7-205ENST00000564010 1437 ntTSL 2 BASIC18.47■□□□□ 0.55
ZNF540Q8NDQ6 LINC00482-201ENST00000332012 2023 ntTSL 1 (best) BASIC18.47■□□□□ 0.55
ZNF540Q8NDQ6 GORAB-201ENST00000367762 1699 ntTSL 1 (best) BASIC18.47■□□□□ 0.55
ZNF540Q8NDQ6 CDH5-204ENST00000563425 1932 ntTSL 5 BASIC18.47■□□□□ 0.55
ZNF540Q8NDQ6 KDELR1-203ENST00000597017 1594 ntTSL 2 BASIC18.47■□□□□ 0.55
ZNF540Q8NDQ6 TMPRSS5-202ENST00000536856 1811 ntTSL 1 (best) BASIC18.46■□□□□ 0.55
ZNF540Q8NDQ6 CAPZB-202ENST00000264203 2068 ntTSL 2 BASIC18.46■□□□□ 0.55
ZNF540Q8NDQ6 SPATA22-210ENST00000573128 1704 ntAPPRIS P1 TSL 1 (best) BASIC18.46■□□□□ 0.55
ZNF540Q8NDQ6 LDHD-202ENST00000450168 1966 ntAPPRIS ALT2 TSL 1 (best) BASIC18.46■□□□□ 0.55
ZNF540Q8NDQ6 UBE3C-201ENST00000348165 5229 ntAPPRIS P1 TSL 1 (best) BASIC18.46■□□□□ 0.55
ZNF540Q8NDQ6 CBFA2T2-201ENST00000342704 2864 ntAPPRIS P1 TSL 1 (best) BASIC18.46■□□□□ 0.55
ZNF540Q8NDQ6 DPF1-201ENST00000355526 1632 ntTSL 1 (best) BASIC18.46■□□□□ 0.55
ZNF540Q8NDQ6 ZNF517-207ENST00000531720 1615 ntAPPRIS P1 TSL 1 (best) BASIC18.46■□□□□ 0.55
ZNF540Q8NDQ6 ASL-203ENST00000380839 1765 ntTSL 5 BASIC18.46■□□□□ 0.55
ZNF540Q8NDQ6 FBXL22-201ENST00000360587 1526 ntAPPRIS P2 TSL 1 (best) BASIC18.46■□□□□ 0.55
ZNF540Q8NDQ6 ADRM1-204ENST00000491935 1530 ntAPPRIS P1 TSL 5 BASIC18.46■□□□□ 0.55
ZNF540Q8NDQ6 GUK1-207ENST00000366726 873 ntAPPRIS P3 TSL 3 BASIC18.46■□□□□ 0.55
ZNF540Q8NDQ6 KRTAP5-2-201ENST00000412090 1118 ntAPPRIS P1 BASIC18.46■□□□□ 0.55
ZNF540Q8NDQ6 AC080013.1-202ENST00000465477 674 ntTSL 5 BASIC18.46■□□□□ 0.55
ZNF540Q8NDQ6 LINC02136-201ENST00000567469 530 ntTSL 4 BASIC18.46■□□□□ 0.55
ZNF540Q8NDQ6 TERF1P2-201ENST00000583350 1212 ntBASIC18.46■□□□□ 0.55
ZNF540Q8NDQ6 PRR14-202ENST00000300835 2198 ntAPPRIS P1 TSL 1 (best) BASIC18.46■□□□□ 0.55
ZNF540Q8NDQ6 PCBP3-203ENST00000400308 1911 ntTSL 1 (best) BASIC18.46■□□□□ 0.55
ZNF540Q8NDQ6 FKRP-202ENST00000391909 2801 ntAPPRIS P1 TSL 2 BASIC18.46■□□□□ 0.55
ZNF540Q8NDQ6 CYHR1-201ENST00000306145 1409 ntTSL 1 (best) BASIC18.46■□□□□ 0.55
ZNF540Q8NDQ6 SEPT11-201ENST00000264893 5593 ntAPPRIS P2 TSL 1 (best) BASIC18.46■□□□□ 0.55
ZNF540Q8NDQ6 KSR1-205ENST00000509603 2731 ntAPPRIS ALT2 TSL 5 BASIC18.46■□□□□ 0.55
ZNF540Q8NDQ6 ST3GAL3-204ENST00000335430 1805 ntTSL 5 BASIC18.46■□□□□ 0.55
ZNF540Q8NDQ6 AC129492.1-201ENST00000399413 1804 ntTSL 1 (best) BASIC18.46■□□□□ 0.55
ZNF540Q8NDQ6 SETD9-211ENST00000628593 1306 ntTSL 1 (best) BASIC18.46■□□□□ 0.55
ZNF540Q8NDQ6 SEPT8-201ENST00000296873 4394 ntAPPRIS P2 TSL 1 (best) BASIC18.46■□□□□ 0.55
ZNF540Q8NDQ6 OGG1-205ENST00000344629 1744 ntAPPRIS ALT2 TSL 1 (best) BASIC18.46■□□□□ 0.55
ZNF540Q8NDQ6 PTPA-223ENST00000452489 2526 ntTSL 1 (best) BASIC18.46■□□□□ 0.55
ZNF540Q8NDQ6 MAPK8IP1P2-201ENST00000580257 1472 ntBASIC18.46■□□□□ 0.54
ZNF540Q8NDQ6 ZNF511-201ENST00000359035 2004 ntTSL 2 BASIC18.45■□□□□ 0.54
ZNF540Q8NDQ6 PACRGL-227ENST00000513459 1773 ntTSL 5 BASIC18.45■□□□□ 0.54
ZNF540Q8NDQ6 NSDHL-201ENST00000370274 1929 ntAPPRIS P2 TSL 1 (best) BASIC18.45■□□□□ 0.54
ZNF540Q8NDQ6 ORAI2-204ENST00000473939 2493 ntAPPRIS P1 TSL 1 (best) BASIC18.45■□□□□ 0.54
ZNF540Q8NDQ6 ACD-201ENST00000219251 2052 ntAPPRIS P3 TSL 2 BASIC18.45■□□□□ 0.54
ZNF540Q8NDQ6 YBX1-201ENST00000321358 1514 ntAPPRIS P1 TSL 1 (best) BASIC18.45■□□□□ 0.54
ZNF540Q8NDQ6 RHOT1-202ENST00000354266 2919 ntTSL 1 (best) BASIC18.45■□□□□ 0.54
ZNF540Q8NDQ6 TMEM179-201ENST00000341595 2513 ntTSL 1 (best) BASIC18.45■□□□□ 0.54
ZNF540Q8NDQ6 ANAPC13-204ENST00000510994 1840 ntAPPRIS P1 TSL 2 BASIC18.45■□□□□ 0.54
ZNF540Q8NDQ6 PKMYT1-216ENST00000574730 1806 ntTSL 2 BASIC18.45■□□□□ 0.54
ZNF540Q8NDQ6 ADAM33-203ENST00000379861 3674 ntAPPRIS ALT2 TSL 1 (best) BASIC18.45■□□□□ 0.54
ZNF540Q8NDQ6 CACNA1B-203ENST00000371355 9647 ntAPPRIS ALT2 TSL 5 BASIC18.45■□□□□ 0.54
ZNF540Q8NDQ6 TPSG1-201ENST00000234798 1108 ntAPPRIS P1 TSL 1 (best) BASIC18.45■□□□□ 0.54
ZNF540Q8NDQ6 GADD45A-201ENST00000370985 803 ntTSL 1 (best) BASIC18.45■□□□□ 0.54
ZNF540Q8NDQ6 ZFAS1-206ENST00000450535 1075 ntTSL 3 BASIC18.45■□□□□ 0.54
ZNF540Q8NDQ6 ZFPL1-203ENST00000525509 478 ntTSL 2 BASIC18.45■□□□□ 0.54
Retrieved 100 of 98,524 protein–RNA pairs in 30.2 ms