Protein–RNA interactions for Protein: Q8N4P3

HDDC3, Guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase MESH1, humanhuman

Predictions only

Length 179 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HDDC3Q8N4P3 ZNF337-AS1-204ENST00000428254 817 ntTSL 5 BASIC20.15■□□□□ 0.82
HDDC3Q8N4P3 STK24-AS1-201ENST00000434547 1278 ntTSL 1 (best) BASIC20.15■□□□□ 0.82
HDDC3Q8N4P3 C12orf76-208ENST00000551185 496 ntTSL 2 BASIC20.15■□□□□ 0.82
HDDC3Q8N4P3 CRNDE-210ENST00000560912 459 ntTSL 5 BASIC20.15■□□□□ 0.82
HDDC3Q8N4P3 LINC02256-201ENST00000561999 366 ntTSL 3 BASIC20.15■□□□□ 0.82
HDDC3Q8N4P3 TK2-213ENST00000563369 882 ntTSL 5 BASIC20.15■□□□□ 0.82
HDDC3Q8N4P3 HOXC13-AS-201ENST00000512916 1408 ntTSL 3 BASIC20.15■□□□□ 0.82
HDDC3Q8N4P3 MON1A-203ENST00000455683 1617 ntAPPRIS ALT2 TSL 1 (best) BASIC20.15■□□□□ 0.82
HDDC3Q8N4P3 MFSD10-206ENST00000508221 1639 ntTSL 5 BASIC20.15■□□□□ 0.82
HDDC3Q8N4P3 ATF5-202ENST00000595125 1637 ntAPPRIS P1 TSL 2 BASIC20.15■□□□□ 0.82
HDDC3Q8N4P3 CPNE9-205ENST00000613455 1742 ntTSL 5 BASIC20.15■□□□□ 0.82
HDDC3Q8N4P3 RCN3-201ENST00000270645 1859 ntAPPRIS P1 TSL 1 (best) BASIC20.15■□□□□ 0.82
HDDC3Q8N4P3 ZNF446-208ENST00000622313 1884 ntTSL 1 (best) BASIC20.15■□□□□ 0.82
HDDC3Q8N4P3 FAM66C-208ENST00000541558 2087 ntTSL 2 BASIC20.15■□□□□ 0.82
HDDC3Q8N4P3 ADCK2-201ENST00000072869 2377 ntAPPRIS P1 TSL 1 (best) BASIC20.15■□□□□ 0.82
HDDC3Q8N4P3 SCOC-207ENST00000506597 1838 ntTSL 1 (best) BASIC20.14■□□□□ 0.81
HDDC3Q8N4P3 SOCS2-210ENST00000551556 1716 ntAPPRIS P1 TSL 1 (best) BASIC20.14■□□□□ 0.81
HDDC3Q8N4P3 HLA-G-202ENST00000376815 851 ntBASIC20.14■□□□□ 0.81
HDDC3Q8N4P3 HLA-G-203ENST00000376818 1127 ntBASIC20.14■□□□□ 0.81
HDDC3Q8N4P3 C5orf56-203ENST00000378953 942 ntAPPRIS ALT2 TSL 2 BASIC20.14■□□□□ 0.81
HDDC3Q8N4P3 AC008105.2-201ENST00000420431 579 ntTSL 4 BASIC20.14■□□□□ 0.81
HDDC3Q8N4P3 AC026412.1-201ENST00000507290 1033 ntTSL 1 (best) BASIC20.14■□□□□ 0.81
HDDC3Q8N4P3 MIEF2-207ENST00000578621 540 ntTSL 4 BASIC20.14■□□□□ 0.81
HDDC3Q8N4P3 CLDND2-203ENST00000601435 575 ntAPPRIS P1 TSL 3 BASIC20.14■□□□□ 0.81
HDDC3Q8N4P3 CORO1B-210ENST00000627576 960 ntTSL 5 BASIC20.14■□□□□ 0.81
HDDC3Q8N4P3 KCNMA1-209ENST00000372443 5059 ntAPPRIS ALT2 TSL 5 BASIC20.14■□□□□ 0.81
HDDC3Q8N4P3 SEPT5-209ENST00000438754 2241 ntTSL 2 BASIC20.14■□□□□ 0.81
HDDC3Q8N4P3 INPPL1-201ENST00000298229 4733 ntAPPRIS P1 TSL 1 (best) BASIC20.14■□□□□ 0.81
HDDC3Q8N4P3 FGFR1-214ENST00000447712 5900 ntAPPRIS P3 TSL 1 (best) BASIC20.14■□□□□ 0.81
HDDC3Q8N4P3 MFSD10-211ENST00000514800 1776 ntTSL 5 BASIC20.13■□□□□ 0.81
HDDC3Q8N4P3 SPSB3-208ENST00000566339 1784 ntAPPRIS P1 TSL 1 (best) BASIC20.13■□□□□ 0.81
HDDC3Q8N4P3 DALRD3-202ENST00000341949 1739 ntAPPRIS P1 TSL 1 (best) BASIC20.13■□□□□ 0.81
HDDC3Q8N4P3 ZNF821-211ENST00000564134 1748 ntTSL 5 BASIC20.13■□□□□ 0.81
HDDC3Q8N4P3 AC109460.3-201ENST00000569969 5296 ntTSL 2 BASIC20.13■□□□□ 0.81
HDDC3Q8N4P3 ANKRD2-201ENST00000298808 1350 ntTSL 1 (best) BASIC20.13■□□□□ 0.81
HDDC3Q8N4P3 FBXO28-202ENST00000424254 1334 ntTSL 1 (best) BASIC20.13■□□□□ 0.81
HDDC3Q8N4P3 NTAN1-201ENST00000287706 1204 ntAPPRIS P1 TSL 1 (best) BASIC20.13■□□□□ 0.81
HDDC3Q8N4P3 LINC01743-201ENST00000366308 964 ntTSL 1 (best) BASIC20.13■□□□□ 0.81
HDDC3Q8N4P3 TMSB4X-201ENST00000380633 495 ntAPPRIS P1 TSL 3 BASIC20.13■□□□□ 0.81
HDDC3Q8N4P3 PSMG1-202ENST00000380900 907 ntTSL 1 (best) BASIC20.13■□□□□ 0.81
HDDC3Q8N4P3 UBE2F-203ENST00000409633 837 ntTSL 3 BASIC20.13■□□□□ 0.81
HDDC3Q8N4P3 HAGLROS-201ENST00000426615 1121 ntTSL 2 BASIC20.13■□□□□ 0.81
HDDC3Q8N4P3 CXCL2-202ENST00000508487 1218 ntAPPRIS P1 TSL 1 (best) BASIC20.13■□□□□ 0.81
HDDC3Q8N4P3 RPH3AL-203ENST00000536489 1235 ntTSL 2 BASIC20.13■□□□□ 0.81
HDDC3Q8N4P3 TNNT1-208ENST00000587465 1065 ntAPPRIS ALT2 TSL 5 BASIC20.13■□□□□ 0.81
HDDC3Q8N4P3 C16orf74-202ENST00000602583 1237 ntAPPRIS ALT2 TSL 1 (best) BASIC20.13■□□□□ 0.81
HDDC3Q8N4P3 AL121829.2-201ENST00000620908 328 ntBASIC20.13■□□□□ 0.81
HDDC3Q8N4P3 MYBL2-201ENST00000217026 2639 ntAPPRIS P1 TSL 1 (best) BASIC20.13■□□□□ 0.81
HDDC3Q8N4P3 CYP2A6-201ENST00000301141 1764 ntAPPRIS P1 TSL 1 (best) BASIC20.13■□□□□ 0.81
HDDC3Q8N4P3 LAYN-204ENST00000525126 1763 ntTSL 5 BASIC20.13■□□□□ 0.81
HDDC3Q8N4P3 DLEU2-208ENST00000621282 3068 ntTSL 1 (best) BASIC20.13■□□□□ 0.81
HDDC3Q8N4P3 U2AF2-202ENST00000450554 3022 ntAPPRIS ALT1 TSL 1 (best) BASIC20.13■□□□□ 0.81
HDDC3Q8N4P3 AC006128.1-201ENST00000624704 1661 ntBASIC20.13■□□□□ 0.81
HDDC3Q8N4P3 CXCR3-202ENST00000373693 1624 ntAPPRIS P1 TSL 1 (best) BASIC20.13■□□□□ 0.81
HDDC3Q8N4P3 WDR45-207ENST00000376372 1639 ntAPPRIS P1 TSL 1 (best) BASIC20.13■□□□□ 0.81
HDDC3Q8N4P3 ASPHD1-201ENST00000308748 1584 ntAPPRIS P2 TSL 1 (best) BASIC20.12■□□□□ 0.81
HDDC3Q8N4P3 ETV2-202ENST00000379026 1571 ntAPPRIS ALT2 TSL 2 BASIC20.12■□□□□ 0.81
HDDC3Q8N4P3 INPP1-202ENST00000392329 2162 ntAPPRIS P1 TSL 5 BASIC20.12■□□□□ 0.81
HDDC3Q8N4P3 WDR25-201ENST00000335290 2123 ntAPPRIS P1 TSL 1 (best) BASIC20.12■□□□□ 0.81
HDDC3Q8N4P3 AC007383.3-201ENST00000453039 1411 ntTSL 3 BASIC20.12■□□□□ 0.81
HDDC3Q8N4P3 VGF-202ENST00000445482 2477 ntAPPRIS P1 TSL 5 BASIC20.12■□□□□ 0.81
HDDC3Q8N4P3 TSTD1-201ENST00000318289 626 ntAPPRIS P3 TSL 1 (best) BASIC20.12■□□□□ 0.81
HDDC3Q8N4P3 IFI6-203ENST00000362020 828 ntAPPRIS ALT2 TSL 1 (best) BASIC20.12■□□□□ 0.81
HDDC3Q8N4P3 FKBP2-202ENST00000394540 1002 ntAPPRIS P1 TSL 1 (best) BASIC20.12■□□□□ 0.81
HDDC3Q8N4P3 HDAC11-203ENST00000402271 1018 ntTSL 3 BASIC20.12■□□□□ 0.81
HDDC3Q8N4P3 CCDC74B-204ENST00000409234 871 ntAPPRIS ALT2 TSL 1 (best) BASIC20.12■□□□□ 0.81
HDDC3Q8N4P3 CENPS-CORT-202ENST00000465026 494 ntTSL 3 BASIC20.12■□□□□ 0.81
HDDC3Q8N4P3 CENPS-CORT-203ENST00000470413 626 ntTSL 2 BASIC20.12■□□□□ 0.81
HDDC3Q8N4P3 AZIN1-AS1-215ENST00000522939 644 ntTSL 2 BASIC20.12■□□□□ 0.81
HDDC3Q8N4P3 EXOSC4-202ENST00000525936 606 ntTSL 3 BASIC20.12■□□□□ 0.81
HDDC3Q8N4P3 FAM181A-203ENST00000556222 1162 ntAPPRIS P1 TSL 1 (best) BASIC20.12■□□□□ 0.81
HDDC3Q8N4P3 LINC02167-201ENST00000562769 594 ntTSL 3 BASIC20.12■□□□□ 0.81
HDDC3Q8N4P3 AL353593.2-202ENST00000602947 550 ntTSL 4 BASIC20.12■□□□□ 0.81
HDDC3Q8N4P3 BZW1-202ENST00000409226 2455 ntTSL 2 BASIC20.12■□□□□ 0.81
HDDC3Q8N4P3 DPF1-209ENST00000456296 1562 ntAPPRIS P1 TSL 5 BASIC20.12■□□□□ 0.81
HDDC3Q8N4P3 E4F1-206ENST00000565090 2028 ntTSL 1 (best) BASIC20.12■□□□□ 0.81
HDDC3Q8N4P3 UBE2Q1-201ENST00000292211 3210 ntAPPRIS P1 TSL 1 (best) BASIC20.12■□□□□ 0.81
HDDC3Q8N4P3 FAM129C-207ENST00000599124 1918 ntAPPRIS ALT2 TSL 1 (best) BASIC20.12■□□□□ 0.81
HDDC3Q8N4P3 AC005224.2-201ENST00000571192 1885 ntTSL 2 BASIC20.11■□□□□ 0.81
HDDC3Q8N4P3 DENND4B-201ENST00000361217 5706 ntAPPRIS P2 TSL 1 (best) BASIC20.11■□□□□ 0.81
HDDC3Q8N4P3 C20orf166-AS1-202ENST00000436101 761 ntTSL 5 BASIC20.11■□□□□ 0.81
HDDC3Q8N4P3 ADAMTS19-AS1-201ENST00000502827 786 ntTSL 4 BASIC20.11■□□□□ 0.81
HDDC3Q8N4P3 FLT3LG-211ENST00000600429 984 ntAPPRIS P1 TSL 1 (best) BASIC20.11■□□□□ 0.81
HDDC3Q8N4P3 CABP2-204ENST00000636477 941 ntTSL 5 BASIC20.11■□□□□ 0.81
HDDC3Q8N4P3 DND1-201ENST00000542735 1605 ntAPPRIS P1 TSL 1 (best) BASIC20.11■□□□□ 0.81
HDDC3Q8N4P3 PTBP1P-201ENST00000554374 1601 ntBASIC20.11■□□□□ 0.81
HDDC3Q8N4P3 TBC1D12-201ENST00000225235 5272 ntAPPRIS P1 TSL 1 (best) BASIC20.11■□□□□ 0.81
HDDC3Q8N4P3 CDIPT-201ENST00000219789 2353 ntAPPRIS P1 TSL 1 (best) BASIC20.1■□□□□ 0.81
HDDC3Q8N4P3 KDELR3-201ENST00000216014 1728 ntAPPRIS P1 TSL 1 (best) BASIC20.1■□□□□ 0.81
HDDC3Q8N4P3 DYRK2-202ENST00000344096 8912 ntAPPRIS P4 TSL 1 (best) BASIC20.1■□□□□ 0.81
HDDC3Q8N4P3 GAL3ST4-204ENST00000423751 1695 ntTSL 3 BASIC20.1■□□□□ 0.81
HDDC3Q8N4P3 ENOSF1-201ENST00000251101 1867 ntAPPRIS P1 TSL 1 (best) BASIC20.1■□□□□ 0.81
HDDC3Q8N4P3 RFC2-202ENST00000352131 1576 ntTSL 1 (best) BASIC20.1■□□□□ 0.81
HDDC3Q8N4P3 SLC25A46-202ENST00000447245 1575 ntTSL 2 BASIC20.1■□□□□ 0.81
HDDC3Q8N4P3 MRPS24-201ENST00000317534 707 ntAPPRIS P1 TSL 1 (best) BASIC20.1■□□□□ 0.81
HDDC3Q8N4P3 DYNLRB1-203ENST00000374846 1044 ntTSL 5 BASIC20.1■□□□□ 0.81
HDDC3Q8N4P3 DMRT2-206ENST00000412350 1244 ntTSL 1 (best) BASIC20.1■□□□□ 0.81
HDDC3Q8N4P3 METTL21A-204ENST00000425132 869 ntTSL 2 BASIC20.1■□□□□ 0.81
HDDC3Q8N4P3 ST20-202ENST00000485386 529 ntAPPRIS P1 TSL 1 (best) BASIC20.1■□□□□ 0.81
HDDC3Q8N4P3 AC091564.2-201ENST00000527191 399 ntTSL 3 BASIC20.1■□□□□ 0.81
Retrieved 100 of 98,524 protein–RNA pairs in 31 ms