Protein–RNA interactions for Protein: Q70EL1

USP54, Inactive ubiquitin carboxyl-terminal hydrolase 54, humanhuman

Predictions only

Length 1,684 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USP54Q70EL1 GNB5-211ENST00000560116 918 ntTSL 1 (best) BASIC26.91■■□□□ 1.9
USP54Q70EL1 ABBA01031674.1-201ENST00000635145 728 ntBASIC26.91■■□□□ 1.9
USP54Q70EL1 DCTD-201ENST00000357067 1931 ntTSL 1 (best) BASIC26.91■■□□□ 1.9
USP54Q70EL1 DNAL4-201ENST00000216068 1504 ntAPPRIS P1 TSL 1 (best) BASIC26.91■■□□□ 1.9
USP54Q70EL1 KRT78-201ENST00000304620 1778 ntAPPRIS P3 TSL 1 (best) BASIC26.91■■□□□ 1.9
USP54Q70EL1 PCED1A-202ENST00000360652 2016 ntAPPRIS P1 TSL 1 (best) BASIC26.91■■□□□ 1.9
USP54Q70EL1 FARP2-223ENST00000627550 2122 ntTSL 2 BASIC26.91■■□□□ 1.9
USP54Q70EL1 JUNB-201ENST00000302754 1820 ntAPPRIS P1 BASIC26.9■■□□□ 1.9
USP54Q70EL1 PODNL1-203ENST00000538371 1826 ntAPPRIS ALT2 TSL 2 BASIC26.9■■□□□ 1.9
USP54Q70EL1 KHDRBS2-201ENST00000281156 2332 ntAPPRIS P1 TSL 1 (best) BASIC26.9■■□□□ 1.9
USP54Q70EL1 DTNB-211ENST00000407661 2420 ntAPPRIS ALT1 TSL 1 (best) BASIC26.9■■□□□ 1.9
USP54Q70EL1 RNASEK-202ENST00000548577 810 ntTSL 1 (best) BASIC26.9■■□□□ 1.9
USP54Q70EL1 WBP2-213ENST00000590221 1745 ntAPPRIS ALT1 TSL 3 BASIC26.9■■□□□ 1.9
USP54Q70EL1 NAGK-229ENST00000613852 1801 ntTSL 1 (best) BASIC26.9■■□□□ 1.9
USP54Q70EL1 KCNK13-201ENST00000282146 2522 ntAPPRIS P1 TSL 1 (best) BASIC26.9■■□□□ 1.9
USP54Q70EL1 ODC1-202ENST00000405333 1943 ntAPPRIS P1 TSL 2 BASIC26.9■■□□□ 1.9
USP54Q70EL1 NTMT1-209ENST00000611055 1562 ntAPPRIS P1 TSL 3 BASIC26.9■■□□□ 1.9
USP54Q70EL1 GPR20-201ENST00000377741 1515 ntAPPRIS P1 TSL 3 BASIC26.89■■□□□ 1.9
USP54Q70EL1 B4GALT1-202ENST00000535206 1535 ntTSL 1 (best) BASIC26.89■■□□□ 1.9
USP54Q70EL1 PLK5-205ENST00000642079 1969 ntBASIC26.89■■□□□ 1.9
USP54Q70EL1 UNC5B-AS1-201ENST00000447119 647 ntTSL 2 BASIC26.89■■□□□ 1.9
USP54Q70EL1 AL445228.2-201ENST00000605589 952 ntBASIC26.89■■□□□ 1.9
USP54Q70EL1 AC092865.7-201ENST00000641832 219 ntBASIC26.89■■□□□ 1.9
USP54Q70EL1 RHOA-202ENST00000418115 2031 ntAPPRIS P1 TSL 1 (best) BASIC26.89■■□□□ 1.9
USP54Q70EL1 PDE10A-205ENST00000616273 2118 ntTSL 2 BASIC26.89■■□□□ 1.9
USP54Q70EL1 RNPEP-201ENST00000295640 2427 ntAPPRIS P1 TSL 1 (best) BASIC26.89■■□□□ 1.9
USP54Q70EL1 HOXD12-202ENST00000406506 1318 ntAPPRIS P1 TSL 3 BASIC26.89■■□□□ 1.9
USP54Q70EL1 RNASEH2C-203ENST00000528220 1337 ntTSL 2 BASIC26.89■■□□□ 1.9
USP54Q70EL1 KCNK17-202ENST00000453413 1706 ntAPPRIS ALT2 TSL 5 BASIC26.89■■□□□ 1.89
USP54Q70EL1 AC004540.1-203ENST00000421862 907 ntTSL 5 BASIC26.89■■□□□ 1.89
USP54Q70EL1 FITM1-202ENST00000559294 800 ntBASIC26.89■■□□□ 1.89
USP54Q70EL1 AL445675.2-201ENST00000620291 557 ntBASIC26.89■■□□□ 1.89
USP54Q70EL1 TPSB2-203ENST00000612142 1352 ntAPPRIS P5 TSL 1 (best) BASIC26.89■■□□□ 1.89
USP54Q70EL1 ETV7-203ENST00000373737 1488 ntAPPRIS ALT2 TSL 1 (best) BASIC26.89■■□□□ 1.89
USP54Q70EL1 VRK2-207ENST00000440705 1676 ntAPPRIS ALT2 TSL 1 (best) BASIC26.88■■□□□ 1.89
USP54Q70EL1 MRPL23-AS1-201ENST00000419080 1876 ntTSL 3 BASIC26.88■■□□□ 1.89
USP54Q70EL1 PTPN18-202ENST00000347849 2472 ntTSL 1 (best) BASIC26.88■■□□□ 1.89
USP54Q70EL1 GNB3-201ENST00000229264 1923 ntAPPRIS P3 TSL 5 BASIC26.88■■□□□ 1.89
USP54Q70EL1 SLC35E2-201ENST00000246421 1430 ntAPPRIS P3 TSL 1 (best) BASIC26.88■■□□□ 1.89
USP54Q70EL1 BIRC7-202ENST00000342412 1302 ntAPPRIS ALT2 TSL 1 (best) BASIC26.88■■□□□ 1.89
USP54Q70EL1 EPOR-208ENST00000592375 2086 ntTSL 2 BASIC26.88■■□□□ 1.89
USP54Q70EL1 RCN3-201ENST00000270645 1859 ntAPPRIS P1 TSL 1 (best) BASIC26.88■■□□□ 1.89
USP54Q70EL1 NDUFAF6-203ENST00000396124 1798 ntAPPRIS P1 TSL 2 BASIC26.88■■□□□ 1.89
USP54Q70EL1 WT1-212ENST00000640146 1554 ntAPPRIS P3 TSL 1 (best) BASIC26.88■■□□□ 1.89
USP54Q70EL1 VCY1B-201ENST00000250823 550 ntAPPRIS P1 TSL 1 (best) BASIC26.88■■□□□ 1.89
USP54Q70EL1 VCY-201ENST00000250825 550 ntAPPRIS P1 TSL 1 (best) BASIC26.88■■□□□ 1.89
USP54Q70EL1 METTL21A-201ENST00000272839 1210 ntTSL 5 BASIC26.88■■□□□ 1.89
USP54Q70EL1 TMIGD2-201ENST00000301272 1262 ntAPPRIS P3 TSL 1 (best) BASIC26.88■■□□□ 1.89
USP54Q70EL1 RXFP4-201ENST00000368318 1240 ntAPPRIS P1 BASIC26.88■■□□□ 1.89
USP54Q70EL1 CRAT-202ENST00000393384 973 ntTSL 2 BASIC26.88■■□□□ 1.89
USP54Q70EL1 TMEM185A-204ENST00000507237 903 ntTSL 2 BASIC26.88■■□□□ 1.89
USP54Q70EL1 KDM2B-217ENST00000543852 1188 ntTSL 5 BASIC26.88■■□□□ 1.89
USP54Q70EL1 SLC39A2-203ENST00000554422 1259 ntTSL 1 (best) BASIC26.88■■□□□ 1.89
USP54Q70EL1 ARHGDIA-207ENST00000580685 1201 ntAPPRIS P1 TSL 1 (best) BASIC26.88■■□□□ 1.89
USP54Q70EL1 SNX11-203ENST00000452859 1601 ntTSL 2 BASIC26.88■■□□□ 1.89
USP54Q70EL1 ILDR2-205ENST00000526687 2299 ntTSL 5 BASIC26.88■■□□□ 1.89
USP54Q70EL1 SYNGR2-201ENST00000225777 2325 ntAPPRIS P1 TSL 1 (best) BASIC26.87■■□□□ 1.89
USP54Q70EL1 HSD11B1L-204ENST00000411793 1362 ntTSL 1 (best) BASIC26.87■■□□□ 1.89
USP54Q70EL1 HES2-203ENST00000377837 1222 ntTSL 1 (best) BASIC26.87■■□□□ 1.89
USP54Q70EL1 AC100839.1-201ENST00000559589 577 ntTSL 4 BASIC26.87■■□□□ 1.89
USP54Q70EL1 PRR29-205ENST00000579184 1052 ntAPPRIS ALT2 TSL 2 BASIC26.87■■□□□ 1.89
USP54Q70EL1 AC010947.1-201ENST00000623454 693 ntBASIC26.87■■□□□ 1.89
USP54Q70EL1 DTNB-207ENST00000405222 2273 ntTSL 1 (best) BASIC26.87■■□□□ 1.89
USP54Q70EL1 UBE2B-201ENST00000265339 2515 ntAPPRIS P1 TSL 1 (best) BASIC26.87■■□□□ 1.89
USP54Q70EL1 EEF1A2-202ENST00000298049 1748 ntAPPRIS P1 TSL 1 (best) BASIC26.87■■□□□ 1.89
USP54Q70EL1 TMEM91-203ENST00000392002 1389 ntAPPRIS P1 TSL 2 BASIC26.86■■□□□ 1.89
USP54Q70EL1 LGALS12-203ENST00000394618 1618 ntAPPRIS P3 TSL 1 (best) BASIC26.86■■□□□ 1.89
USP54Q70EL1 ASPHD1-203ENST00000483405 1115 ntAPPRIS ALT2 TSL 3 BASIC26.86■■□□□ 1.89
USP54Q70EL1 KRT18P16-201ENST00000510337 1294 ntBASIC26.86■■□□□ 1.89
USP54Q70EL1 NCAM1-AS1-201ENST00000526229 1081 ntTSL 2 BASIC26.86■■□□□ 1.89
USP54Q70EL1 BZW1-202ENST00000409226 2455 ntTSL 2 BASIC26.86■■□□□ 1.89
USP54Q70EL1 SCOC-207ENST00000506597 1838 ntTSL 1 (best) BASIC26.86■■□□□ 1.89
USP54Q70EL1 HOXA11-AS-205ENST00000522863 1723 ntTSL 5 BASIC26.86■■□□□ 1.89
USP54Q70EL1 ALG1-201ENST00000262374 2132 ntAPPRIS P1 TSL 1 (best) BASIC26.86■■□□□ 1.89
USP54Q70EL1 POMZP3-201ENST00000275569 1259 ntTSL 2 BASIC26.85■■□□□ 1.89
USP54Q70EL1 PPP1R14BP5-201ENST00000440334 435 ntBASIC26.85■■□□□ 1.89
USP54Q70EL1 AC015712.4-203ENST00000559673 630 ntTSL 3 BASIC26.85■■□□□ 1.89
USP54Q70EL1 AL031600.3-201ENST00000566287 1124 ntTSL 5 BASIC26.85■■□□□ 1.89
USP54Q70EL1 NRM-203ENST00000376421 1734 ntAPPRIS P2 TSL 1 (best) BASIC26.85■■□□□ 1.89
USP54Q70EL1 SAMD4B-208ENST00000598913 2877 ntAPPRIS ALT1 TSL 1 (best) BASIC26.85■■□□□ 1.89
USP54Q70EL1 Z83844.2-201ENST00000456099 1945 ntTSL 2 BASIC26.85■■□□□ 1.89
USP54Q70EL1 GLG1-214ENST00000627032 2147 ntTSL 5 BASIC26.85■■□□□ 1.89
USP54Q70EL1 AC006128.1-201ENST00000624704 1661 ntBASIC26.85■■□□□ 1.89
USP54Q70EL1 TMEM234-203ENST00000373593 1411 ntTSL 1 (best) BASIC26.85■■□□□ 1.89
USP54Q70EL1 HSCB-201ENST00000216027 1114 ntAPPRIS P1 TSL 1 (best) BASIC26.85■■□□□ 1.89
USP54Q70EL1 PTCRA-201ENST00000304672 1080 ntAPPRIS P3 TSL 1 (best) BASIC26.85■■□□□ 1.89
USP54Q70EL1 TERF1P1-201ENST00000311003 1181 ntBASIC26.85■■□□□ 1.89
USP54Q70EL1 UBB-203ENST00000395839 1012 ntAPPRIS P1 TSL 2 BASIC26.85■■□□□ 1.89
USP54Q70EL1 AC134772.1-201ENST00000438872 885 ntTSL 3 BASIC26.85■■□□□ 1.89
USP54Q70EL1 PTCRA-202ENST00000441198 1005 ntTSL 1 (best) BASIC26.85■■□□□ 1.89
USP54Q70EL1 SLC25A3P1-201ENST00000443844 931 ntBASIC26.85■■□□□ 1.89
USP54Q70EL1 PTCRA-203ENST00000446507 759 ntTSL 1 (best) BASIC26.85■■□□□ 1.89
USP54Q70EL1 BAALC-AS1-207ENST00000522856 594 ntTSL 3 BASIC26.85■■□□□ 1.89
USP54Q70EL1 SIGLEC15-202ENST00000546268 1054 ntTSL 2 BASIC26.85■■□□□ 1.89
USP54Q70EL1 P2RY11-201ENST00000321826 1943 ntAPPRIS P1 TSL 1 (best) BASIC26.85■■□□□ 1.89
USP54Q70EL1 KRT16-201ENST00000301653 1644 ntAPPRIS P1 TSL 1 (best) BASIC26.85■■□□□ 1.89
USP54Q70EL1 CYP2D8P-201ENST00000433633 1490 ntBASIC26.85■■□□□ 1.89
USP54Q70EL1 PSKH2-201ENST00000276616 1322 ntAPPRIS P1 TSL 1 (best) BASIC26.85■■□□□ 1.89
USP54Q70EL1 SEPT5-209ENST00000438754 2241 ntTSL 2 BASIC26.84■■□□□ 1.89
USP54Q70EL1 TMEM230-207ENST00000379286 1735 ntAPPRIS P1 TSL 2 BASIC26.84■■□□□ 1.89
Retrieved 100 of 98,524 protein–RNA pairs in 43.6 ms